TCONS_00000630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000630
Unique NameTCONS_00000630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000630 ID=TCONS_00000630|Name=TCONS_00000630|organism=Clytia hemisphaerica|type=transcript|length=564bp
gtttacttgatatttttcgtgcaaatttacatgggatcaaagctaaagct
aagcaaaaatttaattcgaaacccgtgtattgaaATCATGTGGTGCTCGA
TTTTCAACATAATGGGTACTTTAGTTGATGATCATGTCTCGACTGATGAT
GCCCTAGGCTTGGCctcaatgaaatattttttcatgagtCACATGTCAat
gcaaaattaaacttttAATCAAGAGCCTAAGTACAACTTCACTTGGGTCT
GCTACTTTGATAAGCTTTGAAACACATTTTTCCAGAAACATTCCAAACTC
TGCCTTACCTTTGCCATATTTGAGGCTGCATATGGGAACGTTAATTTCAA
CAAGAAAGGCTGGTTTTGTGATTCAGTATCCTCAAACTGAAGTTTCGGCC
AATTTGAATTCATCTTTCAATACATTTACTTTTGGTGATTTATCAGTTTC
TATTGGGCGGAGAAAAAGTTGTCTTATTTTACAGAGCTTTTTAtgtaaaa
ttctaaaatctatCATATTGTTATCAATTGTATTCgtttttattaatatt
tttttataatttat
Run BLAST on NCBI

transcript from alignment at sc0000002:489324..489887

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000630 ID=TCONS_00000630|Name=TCONS_00000630|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at sc0000002:489324..489887 (Clytia hemisphaerica)
ataaattataaaaaaatattaataaaaacGAATACAATTGATAACAATAT
GatagattttagaattttacaTAAAAAGCTCTGTAAAATAAGACAACTTT
TTCTCCGCCCAATAGAAACTGATAAATCACCAAAAGTAAATGTATTGAAA
GATGAATTCAAATTGGCCGAAACTTCAGTTTGAGGATACTGAATCACAAA
ACCAGCCTTTCTTGTTGAAATTAACGTTCCCATATGCAGCCTCAAATATG
GCAAAGGTAAGGCAGAGTTTGGAATGTTTCTGGAAAAATGTGTTTCAAAG
CTTATCAAAGTAGCAGACCCAAGTGAAGTTGTACTTAGGCTCTTGATTaa
aagtttaattttgcatTGACATGTGactcatgaaaaaatatttcattgag
GCCAAGCCTAGGGCATCATCAGTCGAGACATGATCATCAACTAAAGTACC
CATTATGTTGAAAATCGAGCACCACATGATttcaatacacgggtttcgaa
ttaaatttttgcttagctttagctttgatcccatgtaaatttgcacgaaa
aatatcaagtaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000376XLOC_000376Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000630-exon-sc0000002-1491911889:489324..489887TCONS_00000630-exon-sc0000002-1491911889:489324..489887Clytia hemisphaericaexon
TCONS_00000630-exon-sc0000002-1510915933:489324..489887TCONS_00000630-exon-sc0000002-1510915933:489324..489887Clytia hemisphaericaexon
TCONS_00000630-exon-sc0000002-1575043694:489324..489887TCONS_00000630-exon-sc0000002-1575043694:489324..489887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:489324..489887 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.03143	1.51567	0	0.713866	4.66264	3.45572	4.86979	6.27533	2.24506	1.2786	1.31835	1.17513	1.9423	2.38772	1.16935	1.15985	3.50776	2.74085	4.77036	5.22812	5.65016	3.90054	4.4051	3.78048	0	1.15433	6.22798	4.65512	4.96129	4.80783
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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