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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000620 ID=TCONS_00000620|Name=TCONS_00000620|organism=Clytia hemisphaerica|type=transcript|length=1814bp
CTCCAACTGATCAGCCACGTTTGGGTTTTCAGTTGTCTTATTTGATCAAT
ATTGTCAAATATATATTgtgaaaaaaagtgaatttcaaaatgaataacAG
AACTGCTTTTGGTAGCAGAACACATGATGTAGATCTTTCATTCGAAAGCA
TCTCCAAAGAAGGCTTTGCATGGTGGCCTACTTATCTTTCAAAGCCTGAC
AACGATTCGTCAATCGACATTCGAAAGTTGGGGAAATCCTCGCTCAACAA
ACATCGTATCAGCAAGGAGCATATTTTCTTGAGAACTGGCTACAATGTGC
AAGGGACCAACAAAATGAAGTCCTTGAAACATAAATTCCGGTCTCATAAG
AAAAAAGTTGCTTCACATCCTTTCAAGAACAGAAATGGAAAGGGAATCGC
ACCAGAGTTCGTATTGTCAGACAACTCTTTTGACACACCACATCATCTGG
ATTTCCCATCCACAGAAGTTCTCAATCTCATAGATTCGATGGAACGGTTA
TCCTTGGATGAACCACAAGAAGCCGAAGAAGCTGAACCAGCGGAACAACC
ACAAGGGCAAGAGGTTAACCTCGTTGATCCACCGCAAGAGCAAGTAGCTA
ACCAACATGGGCCACCTCAAGAGCAAATAGCTGACCCCGCCGGGCCACTA
CAAGAACAACCTATGGATGTCATCGATGATCCAGATGAGCGACCAGCTGA
ACTAATAATTCAACCTCTGGAATTTTTAGGAGGTGAGCAAGTTGATAATG
TCGGCGACGAATTTGATAATGTCGGCGACGAATTTGAACAAGCATTTCTC
CTCATTCATCAGCTCCAAGAGCGATTACATCAATCAGAAGGGCTCGTGGA
CGTGGACGCTCAAGTAGAAGAGCTCTTCGACGCTCAACCACAAGGTCCAT
CTGCTAACAAGCCATATAGAATCGTTCGAATGCCGCCGCCAGTCGATAAC
AACATTGGAACGACTGGAACAGCTGAGGAACATCGACGTTTCAAAGAACC
AATGAAAAACAACACTAAAAGAGTTCCAGCCTTCCTCGATTTACGCCCTC
CTCTCGGATGCACTTTCGAAAACACGGCTTCTACGGAACTGGTCTCCTAC
TACATGTTACAGTTCAATGAATATGAACGTCGACGTAAAAGAATAATGCG
CTCAGATGAAGAGTTCGAAGATGACGTTGAAAGTGACGTCGATGGCTATG
AAAGTGACCTTGATGACGACGAGGACTACGTTAACAACATTGAGAATATT
GATGTCATTGAAGATGACTTCGAAAGTGAGGTTGAAGATGACGAGAACGA
TGCTAATGATGATGAGGTCAGTATCGAAAACGGCAAGCGAAAACGTGTCG
ACGACACTGACAGCCAAGACGTCGATGACCCTTCAAATAAACGGCAACGT
GTCGCTGACATCCCTTCAATCACTGCTCCCTTGTCGACAGGTTATTTCTT
GTCGCCGTACACCAACAACATGGAAAAATGTCACCCTGATGATGTTGATG
ACGATATGATCCAGGCTGCTCGTAAAAGACCTGCAGCTGACGATGACGGC
GACAGTATCGAAAAACGCCGACGACTTTAAGTCGTCACAAAAAGTGTCGA
ACGCAACGAAGGAATGGCAAATATGAGATATTTCAACACCTTTCAATATC
ATATTCTACGTGGCTTCTTGAACAACACATGGAAGTCGCAACAGTTAATC
ATTCCTTCCAACTAAATCCAGATTGCGTCTACAATATCTCACAACATCCT
TTCTACGACGCAATTCGCGCGGCAAGACATACACGGCACCCGACACACAC
ACTAAACCTCGTTG Run BLAST on NCBI protein sequence of TCONS_00000620-protein >TCONS_00000620-protein ID=TCONS_00000620-protein|Name=TCONS_00000620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MNNRTAFGSRTHDVDLSFESISKEGFAWWPTYLSKPDNDSSIDIRKLGKS
SLNKHRISKEHIFLRTGYNVQGTNKMKSLKHKFRSHKKKVASHPFKNRNG
KGIAPEFVLSDNSFDTPHHLDFPSTEVLNLIDSMERLSLDEPQEAEEAEP
AEQPQGQEVNLVDPPQEQVANQHGPPQEQIADPAGPLQEQPMDVIDDPDE
RPAELIIQPLEFLGGEQVDNVGDEFDNVGDEFEQAFLLIHQLQERLHQSE
GLVDVDAQVEELFDAQPQGPSANKPYRIVRMPPPVDNNIGTTGTAEEHRR
FKEPMKNNTKRVPAFLDLRPPLGCTFENTASTELVSYYMLQFNEYERRRK
RIMRSDEEFEDDVESDVDGYESDLDDDEDYVNNIENIDVIEDDFESEVED
DENDANDDEVSIENGKRKRVDDTDSQDVDDPSNKRQRVADIPSITAPLST
GYFLSPYTNNMEKCHPDDVDDDMIQAARKRPAADDDGDSIEKRRRL Run BLAST on NCBI transcript from alignment at sc0000002:28621..30434 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000620 ID=TCONS_00000620|Name=TCONS_00000620|organism=Clytia hemisphaerica|type=transcript|length=1814bp|location=Sequence derived from alignment at sc0000002:28621..30434 (Clytia hemisphaerica)
CAACGAGGTTTAGTGTGTGTGTCGGGTGCCGTGTATGTCTTGCCGCGCGA
ATTGCGTCGTAGAAAGGATGTTGTGAGATATTGTAGACGCAATCTGGATT
TAGTTGGAAGGAATGATTAACTGTTGCGACTTCCATGTGTTGTTCAAGAA
GCCACGTAGAATATGATATTGAAAGGTGTTGAAATATCTCATATTTGCCA
TTCCTTCGTTGCGTTCGACACTTTTTGTGACGACTTAAAGTCGTCGGCGT
TTTTCGATACTGTCGCCGTCATCGTCAGCTGCAGGTCTTTTACGAGCAGC
CTGGATCATATCGTCATCAACATCATCAGGGTGACATTTTTCCATGTTGT
TGGTGTACGGCGACAAGAAATAACCTGTCGACAAGGGAGCAGTGATTGAA
GGGATGTCAGCGACACGTTGCCGTTTATTTGAAGGGTCATCGACGTCTTG
GCTGTCAGTGTCGTCGACACGTTTTCGCTTGCCGTTTTCGATACTGACCT
CATCATCATTAGCATCGTTCTCGTCATCTTCAACCTCACTTTCGAAGTCA
TCTTCAATGACATCAATATTCTCAATGTTGTTAACGTAGTCCTCGTCGTC
ATCAAGGTCACTTTCATAGCCATCGACGTCACTTTCAACGTCATCTTCGA
ACTCTTCATCTGAGCGCATTATTCTTTTACGTCGACGTTCATATTCATTG
AACTGTAACATGTAGTAGGAGACCAGTTCCGTAGAAGCCGTGTTTTCGAA
AGTGCATCCGAGAGGAGGGCGTAAATCGAGGAAGGCTGGAACTCTTTTAG
TGTTGTTTTTCATTGGTTCTTTGAAACGTCGATGTTCCTCAGCTGTTCCA
GTCGTTCCAATGTTGTTATCGACTGGCGGCGGCATTCGAACGATTCTATA
TGGCTTGTTAGCAGATGGACCTTGTGGTTGAGCGTCGAAGAGCTCTTCTA
CTTGAGCGTCCACGTCCACGAGCCCTTCTGATTGATGTAATCGCTCTTGG
AGCTGATGAATGAGGAGAAATGCTTGTTCAAATTCGTCGCCGACATTATC
AAATTCGTCGCCGACATTATCAACTTGCTCACCTCCTAAAAATTCCAGAG
GTTGAATTATTAGTTCAGCTGGTCGCTCATCTGGATCATCGATGACATCC
ATAGGTTGTTCTTGTAGTGGCCCGGCGGGGTCAGCTATTTGCTCTTGAGG
TGGCCCATGTTGGTTAGCTACTTGCTCTTGCGGTGGATCAACGAGGTTAA
CCTCTTGCCCTTGTGGTTGTTCCGCTGGTTCAGCTTCTTCGGCTTCTTGT
GGTTCATCCAAGGATAACCGTTCCATCGAATCTATGAGATTGAGAACTTC
TGTGGATGGGAAATCCAGATGATGTGGTGTGTCAAAAGAGTTGTCTGACA
ATACGAACTCTGGTGCGATTCCCTTTCCATTTCTGTTCTTGAAAGGATGT
GAAGCAACTTTTTTCTTATGAGACCGGAATTTATGTTTCAAGGACTTCAT
TTTGTTGGTCCCTTGCACATTGTAGCCAGTTCTCAAGAAAATATGCTCCT
TGCTGATACGATGTTTGTTGAGCGAGGATTTCCCCAACTTTCGAATGTCG
ATTGACGAATCGTTGTCAGGCTTTGAAAGATAAGTAGGCCACCATGCAAA
GCCTTCTTTGGAGATGCTTTCGAATGAAAGATCTACATCATGTGTTCTGC
TACCAAAAGCAGTTCTgttattcattttgaaattcactttttttcacAAT
ATATATTTGACAATATTGATCAAATAAGACAACTGAAAACCCAAACGTGG
CTGATCAGTTGGAG Coding sequence (CDS) from alignment at sc0000002:28621..30434 >TCONS_00000620 ID=TCONS_00000620|Name=TCONS_00000620|organism=Clytia hemisphaerica|type=CDS|length=1491bp|location=Sequence derived from alignment at sc0000002:28621..30434 (Clytia hemisphaerica)
TTAAAGTCGTCGGCGTTTTTCGATACTGTCGCCGTCATCGTCAGCTGCAG
GTCTTTTACGAGCAGCCTGGATCATATCGTCATCAACATCATCAGGGTGA
CATTTTTCCATGTTGTTGGTGTACGGCGACAAGAAATAACCTGTCGACAA
GGGAGCAGTGATTGAAGGGATGTCAGCGACACGTTGCCGTTTATTTGAAG
GGTCATCGACGTCTTGGCTGTCAGTGTCGTCGACACGTTTTCGCTTGCCG
TTTTCGATACTGACCTCATCATCATTAGCATCGTTCTCGTCATCTTCAAC
CTCACTTTCGAAGTCATCTTCAATGACATCAATATTCTCAATGTTGTTAA
CGTAGTCCTCGTCGTCATCAAGGTCACTTTCATAGCCATCGACGTCACTT
TCAACGTCATCTTCGAACTCTTCATCTGAGCGCATTATTCTTTTACGTCG
ACGTTCATATTCATTGAACTGTAACATGTAGTAGGAGACCAGTTCCGTAG
AAGCCGTGTTTTCGAAAGTGCATCCGAGAGGAGGGCGTAAATCGAGGAAG
GCTGGAACTCTTTTAGTGTTGTTTTTCATTGGTTCTTTGAAACGTCGATG
TTCCTCAGCTGTTCCAGTCGTTCCAATGTTGTTATCGACTGGCGGCGGCA
TTCGAACGATTCTATATGGCTTGTTAGCAGATGGACCTTGTGGTTGAGCG
TCGAAGAGCTCTTCTACTTGAGCGTCCACGTCCACGAGCCCTTCTGATTG
ATGTAATCGCTCTTGGAGCTGATGAATGAGGAGAAATGCTTGTTCAAATT
CGTCGCCGACATTATCAAATTCGTCGCCGACATTATCAACTTGCTCACCT
CCTAAAAATTCCAGAGGTTGAATTATTAGTTCAGCTGGTCGCTCATCTGG
ATCATCGATGACATCCATAGGTTGTTCTTGTAGTGGCCCGGCGGGGTCAG
CTATTTGCTCTTGAGGTGGCCCATGTTGGTTAGCTACTTGCTCTTGCGGT
GGATCAACGAGGTTAACCTCTTGCCCTTGTGGTTGTTCCGCTGGTTCAGC
TTCTTCGGCTTCTTGTGGTTCATCCAAGGATAACCGTTCCATCGAATCTA
TGAGATTGAGAACTTCTGTGGATGGGAAATCCAGATGATGTGGTGTGTCA
AAAGAGTTGTCTGACAATACGAACTCTGGTGCGATTCCCTTTCCATTTCT
GTTCTTGAAAGGATGTGAAGCAACTTTTTTCTTATGAGACCGGAATTTAT
GTTTCAAGGACTTCATTTTGTTGGTCCCTTGCACATTGTAGCCAGTTCTC
AAGAAAATATGCTCCTTGCTGATACGATGTTTGTTGAGCGAGGATTTCCC
CAACTTTCGAATGTCGATTGACGAATCGTTGTCAGGCTTTGAAAGATAAG
TAGGCCACCATGCAAAGCCTTCTTTGGAGATGCTTTCGAATGAAAGATCT
ACATCATGTGTTCTGCTACCAAAAGCAGTTCTgttattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000620-exon-sc0000002-1491911889:28621..30434 | TCONS_00000620-exon-sc0000002-1491911889:28621..30434 | Clytia hemisphaerica | exon |
| TCONS_00000620-exon-sc0000002-1510915933:28621..30434 | TCONS_00000620-exon-sc0000002-1510915933:28621..30434 | Clytia hemisphaerica | exon |
| TCONS_00000620-exon-sc0000002-1575043694:28621..30434 | TCONS_00000620-exon-sc0000002-1575043694:28621..30434 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:28621..30434 . |
Blast
The following BLAST results are available for this feature:
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