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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000620 ID=TCONS_00000620|Name=TCONS_00000620|organism=Clytia hemisphaerica|type=transcript|length=1814bp CTCCAACTGATCAGCCACGTTTGGGTTTTCAGTTGTCTTATTTGATCAAT ATTGTCAAATATATATTgtgaaaaaaagtgaatttcaaaatgaataacAG AACTGCTTTTGGTAGCAGAACACATGATGTAGATCTTTCATTCGAAAGCA TCTCCAAAGAAGGCTTTGCATGGTGGCCTACTTATCTTTCAAAGCCTGAC AACGATTCGTCAATCGACATTCGAAAGTTGGGGAAATCCTCGCTCAACAA ACATCGTATCAGCAAGGAGCATATTTTCTTGAGAACTGGCTACAATGTGC AAGGGACCAACAAAATGAAGTCCTTGAAACATAAATTCCGGTCTCATAAG AAAAAAGTTGCTTCACATCCTTTCAAGAACAGAAATGGAAAGGGAATCGC ACCAGAGTTCGTATTGTCAGACAACTCTTTTGACACACCACATCATCTGG ATTTCCCATCCACAGAAGTTCTCAATCTCATAGATTCGATGGAACGGTTA TCCTTGGATGAACCACAAGAAGCCGAAGAAGCTGAACCAGCGGAACAACC ACAAGGGCAAGAGGTTAACCTCGTTGATCCACCGCAAGAGCAAGTAGCTA ACCAACATGGGCCACCTCAAGAGCAAATAGCTGACCCCGCCGGGCCACTA CAAGAACAACCTATGGATGTCATCGATGATCCAGATGAGCGACCAGCTGA ACTAATAATTCAACCTCTGGAATTTTTAGGAGGTGAGCAAGTTGATAATG TCGGCGACGAATTTGATAATGTCGGCGACGAATTTGAACAAGCATTTCTC CTCATTCATCAGCTCCAAGAGCGATTACATCAATCAGAAGGGCTCGTGGA CGTGGACGCTCAAGTAGAAGAGCTCTTCGACGCTCAACCACAAGGTCCAT CTGCTAACAAGCCATATAGAATCGTTCGAATGCCGCCGCCAGTCGATAAC AACATTGGAACGACTGGAACAGCTGAGGAACATCGACGTTTCAAAGAACC AATGAAAAACAACACTAAAAGAGTTCCAGCCTTCCTCGATTTACGCCCTC CTCTCGGATGCACTTTCGAAAACACGGCTTCTACGGAACTGGTCTCCTAC TACATGTTACAGTTCAATGAATATGAACGTCGACGTAAAAGAATAATGCG CTCAGATGAAGAGTTCGAAGATGACGTTGAAAGTGACGTCGATGGCTATG AAAGTGACCTTGATGACGACGAGGACTACGTTAACAACATTGAGAATATT GATGTCATTGAAGATGACTTCGAAAGTGAGGTTGAAGATGACGAGAACGA TGCTAATGATGATGAGGTCAGTATCGAAAACGGCAAGCGAAAACGTGTCG ACGACACTGACAGCCAAGACGTCGATGACCCTTCAAATAAACGGCAACGT GTCGCTGACATCCCTTCAATCACTGCTCCCTTGTCGACAGGTTATTTCTT GTCGCCGTACACCAACAACATGGAAAAATGTCACCCTGATGATGTTGATG ACGATATGATCCAGGCTGCTCGTAAAAGACCTGCAGCTGACGATGACGGC GACAGTATCGAAAAACGCCGACGACTTTAAGTCGTCACAAAAAGTGTCGA ACGCAACGAAGGAATGGCAAATATGAGATATTTCAACACCTTTCAATATC ATATTCTACGTGGCTTCTTGAACAACACATGGAAGTCGCAACAGTTAATC ATTCCTTCCAACTAAATCCAGATTGCGTCTACAATATCTCACAACATCCT TTCTACGACGCAATTCGCGCGGCAAGACATACACGGCACCCGACACACAC ACTAAACCTCGTTG Run BLAST on NCBI protein sequence of TCONS_00000620-protein >TCONS_00000620-protein ID=TCONS_00000620-protein|Name=TCONS_00000620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MNNRTAFGSRTHDVDLSFESISKEGFAWWPTYLSKPDNDSSIDIRKLGKS SLNKHRISKEHIFLRTGYNVQGTNKMKSLKHKFRSHKKKVASHPFKNRNG KGIAPEFVLSDNSFDTPHHLDFPSTEVLNLIDSMERLSLDEPQEAEEAEP AEQPQGQEVNLVDPPQEQVANQHGPPQEQIADPAGPLQEQPMDVIDDPDE RPAELIIQPLEFLGGEQVDNVGDEFDNVGDEFEQAFLLIHQLQERLHQSE GLVDVDAQVEELFDAQPQGPSANKPYRIVRMPPPVDNNIGTTGTAEEHRR FKEPMKNNTKRVPAFLDLRPPLGCTFENTASTELVSYYMLQFNEYERRRK RIMRSDEEFEDDVESDVDGYESDLDDDEDYVNNIENIDVIEDDFESEVED DENDANDDEVSIENGKRKRVDDTDSQDVDDPSNKRQRVADIPSITAPLST GYFLSPYTNNMEKCHPDDVDDDMIQAARKRPAADDDGDSIEKRRRL Run BLAST on NCBI transcript from alignment at sc0000002:28621..30434 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000620 ID=TCONS_00000620|Name=TCONS_00000620|organism=Clytia hemisphaerica|type=transcript|length=1814bp|location=Sequence derived from alignment at sc0000002:28621..30434 (Clytia hemisphaerica) CAACGAGGTTTAGTGTGTGTGTCGGGTGCCGTGTATGTCTTGCCGCGCGA
ATTGCGTCGTAGAAAGGATGTTGTGAGATATTGTAGACGCAATCTGGATT
TAGTTGGAAGGAATGATTAACTGTTGCGACTTCCATGTGTTGTTCAAGAA
GCCACGTAGAATATGATATTGAAAGGTGTTGAAATATCTCATATTTGCCA
TTCCTTCGTTGCGTTCGACACTTTTTGTGACGACTTAAAGTCGTCGGCGT
TTTTCGATACTGTCGCCGTCATCGTCAGCTGCAGGTCTTTTACGAGCAGC
CTGGATCATATCGTCATCAACATCATCAGGGTGACATTTTTCCATGTTGT
TGGTGTACGGCGACAAGAAATAACCTGTCGACAAGGGAGCAGTGATTGAA
GGGATGTCAGCGACACGTTGCCGTTTATTTGAAGGGTCATCGACGTCTTG
GCTGTCAGTGTCGTCGACACGTTTTCGCTTGCCGTTTTCGATACTGACCT
CATCATCATTAGCATCGTTCTCGTCATCTTCAACCTCACTTTCGAAGTCA
TCTTCAATGACATCAATATTCTCAATGTTGTTAACGTAGTCCTCGTCGTC
ATCAAGGTCACTTTCATAGCCATCGACGTCACTTTCAACGTCATCTTCGA
ACTCTTCATCTGAGCGCATTATTCTTTTACGTCGACGTTCATATTCATTG
AACTGTAACATGTAGTAGGAGACCAGTTCCGTAGAAGCCGTGTTTTCGAA
AGTGCATCCGAGAGGAGGGCGTAAATCGAGGAAGGCTGGAACTCTTTTAG
TGTTGTTTTTCATTGGTTCTTTGAAACGTCGATGTTCCTCAGCTGTTCCA
GTCGTTCCAATGTTGTTATCGACTGGCGGCGGCATTCGAACGATTCTATA
TGGCTTGTTAGCAGATGGACCTTGTGGTTGAGCGTCGAAGAGCTCTTCTA
CTTGAGCGTCCACGTCCACGAGCCCTTCTGATTGATGTAATCGCTCTTGG
AGCTGATGAATGAGGAGAAATGCTTGTTCAAATTCGTCGCCGACATTATC
AAATTCGTCGCCGACATTATCAACTTGCTCACCTCCTAAAAATTCCAGAG
GTTGAATTATTAGTTCAGCTGGTCGCTCATCTGGATCATCGATGACATCC
ATAGGTTGTTCTTGTAGTGGCCCGGCGGGGTCAGCTATTTGCTCTTGAGG
TGGCCCATGTTGGTTAGCTACTTGCTCTTGCGGTGGATCAACGAGGTTAA
CCTCTTGCCCTTGTGGTTGTTCCGCTGGTTCAGCTTCTTCGGCTTCTTGT
GGTTCATCCAAGGATAACCGTTCCATCGAATCTATGAGATTGAGAACTTC
TGTGGATGGGAAATCCAGATGATGTGGTGTGTCAAAAGAGTTGTCTGACA
ATACGAACTCTGGTGCGATTCCCTTTCCATTTCTGTTCTTGAAAGGATGT
GAAGCAACTTTTTTCTTATGAGACCGGAATTTATGTTTCAAGGACTTCAT
TTTGTTGGTCCCTTGCACATTGTAGCCAGTTCTCAAGAAAATATGCTCCT
TGCTGATACGATGTTTGTTGAGCGAGGATTTCCCCAACTTTCGAATGTCG
ATTGACGAATCGTTGTCAGGCTTTGAAAGATAAGTAGGCCACCATGCAAA
GCCTTCTTTGGAGATGCTTTCGAATGAAAGATCTACATCATGTGTTCTGC
TACCAAAAGCAGTTCTgttattcattttgaaattcactttttttcacAAT
ATATATTTGACAATATTGATCAAATAAGACAACTGAAAACCCAAACGTGG
CTGATCAGTTGGAG Coding sequence (CDS) from alignment at sc0000002:28621..30434 >TCONS_00000620 ID=TCONS_00000620|Name=TCONS_00000620|organism=Clytia hemisphaerica|type=CDS|length=1491bp|location=Sequence derived from alignment at sc0000002:28621..30434 (Clytia hemisphaerica) TTAAAGTCGTCGGCGTTTTTCGATACTGTCGCCGTCATCGTCAGCTGCAG GTCTTTTACGAGCAGCCTGGATCATATCGTCATCAACATCATCAGGGTGA CATTTTTCCATGTTGTTGGTGTACGGCGACAAGAAATAACCTGTCGACAA GGGAGCAGTGATTGAAGGGATGTCAGCGACACGTTGCCGTTTATTTGAAG GGTCATCGACGTCTTGGCTGTCAGTGTCGTCGACACGTTTTCGCTTGCCG TTTTCGATACTGACCTCATCATCATTAGCATCGTTCTCGTCATCTTCAAC CTCACTTTCGAAGTCATCTTCAATGACATCAATATTCTCAATGTTGTTAA CGTAGTCCTCGTCGTCATCAAGGTCACTTTCATAGCCATCGACGTCACTT TCAACGTCATCTTCGAACTCTTCATCTGAGCGCATTATTCTTTTACGTCG ACGTTCATATTCATTGAACTGTAACATGTAGTAGGAGACCAGTTCCGTAG AAGCCGTGTTTTCGAAAGTGCATCCGAGAGGAGGGCGTAAATCGAGGAAG GCTGGAACTCTTTTAGTGTTGTTTTTCATTGGTTCTTTGAAACGTCGATG TTCCTCAGCTGTTCCAGTCGTTCCAATGTTGTTATCGACTGGCGGCGGCA TTCGAACGATTCTATATGGCTTGTTAGCAGATGGACCTTGTGGTTGAGCG TCGAAGAGCTCTTCTACTTGAGCGTCCACGTCCACGAGCCCTTCTGATTG ATGTAATCGCTCTTGGAGCTGATGAATGAGGAGAAATGCTTGTTCAAATT CGTCGCCGACATTATCAAATTCGTCGCCGACATTATCAACTTGCTCACCT CCTAAAAATTCCAGAGGTTGAATTATTAGTTCAGCTGGTCGCTCATCTGG ATCATCGATGACATCCATAGGTTGTTCTTGTAGTGGCCCGGCGGGGTCAG CTATTTGCTCTTGAGGTGGCCCATGTTGGTTAGCTACTTGCTCTTGCGGT GGATCAACGAGGTTAACCTCTTGCCCTTGTGGTTGTTCCGCTGGTTCAGC TTCTTCGGCTTCTTGTGGTTCATCCAAGGATAACCGTTCCATCGAATCTA TGAGATTGAGAACTTCTGTGGATGGGAAATCCAGATGATGTGGTGTGTCA AAAGAGTTGTCTGACAATACGAACTCTGGTGCGATTCCCTTTCCATTTCT GTTCTTGAAAGGATGTGAAGCAACTTTTTTCTTATGAGACCGGAATTTAT GTTTCAAGGACTTCATTTTGTTGGTCCCTTGCACATTGTAGCCAGTTCTC AAGAAAATATGCTCCTTGCTGATACGATGTTTGTTGAGCGAGGATTTCCC CAACTTTCGAATGTCGATTGACGAATCGTTGTCAGGCTTTGAAAGATAAG TAGGCCACCATGCAAAGCCTTCTTTGGAGATGCTTTCGAATGAAAGATCT ACATCATGTGTTCTGCTACCAAAAGCAGTTCTgttattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000620-exon-sc0000002-1491911889:28621..30434 | TCONS_00000620-exon-sc0000002-1491911889:28621..30434 | Clytia hemisphaerica | exon |
TCONS_00000620-exon-sc0000002-1510915933:28621..30434 | TCONS_00000620-exon-sc0000002-1510915933:28621..30434 | Clytia hemisphaerica | exon |
TCONS_00000620-exon-sc0000002-1575043694:28621..30434 | TCONS_00000620-exon-sc0000002-1575043694:28621..30434 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000002 | supercontig | sc0000002:28621..30434 . |
Blast
The following BLAST results are available for this feature:
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