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TCONS_00000620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000620
Unique NameTCONS_00000620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000620 ID=TCONS_00000620|Name=TCONS_00000620|organism=Clytia hemisphaerica|type=transcript|length=1814bp
CTCCAACTGATCAGCCACGTTTGGGTTTTCAGTTGTCTTATTTGATCAAT
ATTGTCAAATATATATTgtgaaaaaaagtgaatttcaaaatgaataacAG
AACTGCTTTTGGTAGCAGAACACATGATGTAGATCTTTCATTCGAAAGCA
TCTCCAAAGAAGGCTTTGCATGGTGGCCTACTTATCTTTCAAAGCCTGAC
AACGATTCGTCAATCGACATTCGAAAGTTGGGGAAATCCTCGCTCAACAA
ACATCGTATCAGCAAGGAGCATATTTTCTTGAGAACTGGCTACAATGTGC
AAGGGACCAACAAAATGAAGTCCTTGAAACATAAATTCCGGTCTCATAAG
AAAAAAGTTGCTTCACATCCTTTCAAGAACAGAAATGGAAAGGGAATCGC
ACCAGAGTTCGTATTGTCAGACAACTCTTTTGACACACCACATCATCTGG
ATTTCCCATCCACAGAAGTTCTCAATCTCATAGATTCGATGGAACGGTTA
TCCTTGGATGAACCACAAGAAGCCGAAGAAGCTGAACCAGCGGAACAACC
ACAAGGGCAAGAGGTTAACCTCGTTGATCCACCGCAAGAGCAAGTAGCTA
ACCAACATGGGCCACCTCAAGAGCAAATAGCTGACCCCGCCGGGCCACTA
CAAGAACAACCTATGGATGTCATCGATGATCCAGATGAGCGACCAGCTGA
ACTAATAATTCAACCTCTGGAATTTTTAGGAGGTGAGCAAGTTGATAATG
TCGGCGACGAATTTGATAATGTCGGCGACGAATTTGAACAAGCATTTCTC
CTCATTCATCAGCTCCAAGAGCGATTACATCAATCAGAAGGGCTCGTGGA
CGTGGACGCTCAAGTAGAAGAGCTCTTCGACGCTCAACCACAAGGTCCAT
CTGCTAACAAGCCATATAGAATCGTTCGAATGCCGCCGCCAGTCGATAAC
AACATTGGAACGACTGGAACAGCTGAGGAACATCGACGTTTCAAAGAACC
AATGAAAAACAACACTAAAAGAGTTCCAGCCTTCCTCGATTTACGCCCTC
CTCTCGGATGCACTTTCGAAAACACGGCTTCTACGGAACTGGTCTCCTAC
TACATGTTACAGTTCAATGAATATGAACGTCGACGTAAAAGAATAATGCG
CTCAGATGAAGAGTTCGAAGATGACGTTGAAAGTGACGTCGATGGCTATG
AAAGTGACCTTGATGACGACGAGGACTACGTTAACAACATTGAGAATATT
GATGTCATTGAAGATGACTTCGAAAGTGAGGTTGAAGATGACGAGAACGA
TGCTAATGATGATGAGGTCAGTATCGAAAACGGCAAGCGAAAACGTGTCG
ACGACACTGACAGCCAAGACGTCGATGACCCTTCAAATAAACGGCAACGT
GTCGCTGACATCCCTTCAATCACTGCTCCCTTGTCGACAGGTTATTTCTT
GTCGCCGTACACCAACAACATGGAAAAATGTCACCCTGATGATGTTGATG
ACGATATGATCCAGGCTGCTCGTAAAAGACCTGCAGCTGACGATGACGGC
GACAGTATCGAAAAACGCCGACGACTTTAAGTCGTCACAAAAAGTGTCGA
ACGCAACGAAGGAATGGCAAATATGAGATATTTCAACACCTTTCAATATC
ATATTCTACGTGGCTTCTTGAACAACACATGGAAGTCGCAACAGTTAATC
ATTCCTTCCAACTAAATCCAGATTGCGTCTACAATATCTCACAACATCCT
TTCTACGACGCAATTCGCGCGGCAAGACATACACGGCACCCGACACACAC
ACTAAACCTCGTTG
Run BLAST on NCBI

protein sequence of TCONS_00000620-protein

>TCONS_00000620-protein ID=TCONS_00000620-protein|Name=TCONS_00000620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MNNRTAFGSRTHDVDLSFESISKEGFAWWPTYLSKPDNDSSIDIRKLGKS
SLNKHRISKEHIFLRTGYNVQGTNKMKSLKHKFRSHKKKVASHPFKNRNG
KGIAPEFVLSDNSFDTPHHLDFPSTEVLNLIDSMERLSLDEPQEAEEAEP
AEQPQGQEVNLVDPPQEQVANQHGPPQEQIADPAGPLQEQPMDVIDDPDE
RPAELIIQPLEFLGGEQVDNVGDEFDNVGDEFEQAFLLIHQLQERLHQSE
GLVDVDAQVEELFDAQPQGPSANKPYRIVRMPPPVDNNIGTTGTAEEHRR
FKEPMKNNTKRVPAFLDLRPPLGCTFENTASTELVSYYMLQFNEYERRRK
RIMRSDEEFEDDVESDVDGYESDLDDDEDYVNNIENIDVIEDDFESEVED
DENDANDDEVSIENGKRKRVDDTDSQDVDDPSNKRQRVADIPSITAPLST
GYFLSPYTNNMEKCHPDDVDDDMIQAARKRPAADDDGDSIEKRRRL
Run BLAST on NCBI

transcript from alignment at sc0000002:28621..30434

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000620 ID=TCONS_00000620|Name=TCONS_00000620|organism=Clytia hemisphaerica|type=transcript|length=1814bp|location=Sequence derived from alignment at sc0000002:28621..30434 (Clytia hemisphaerica)
CAACGAGGTTTAGTGTGTGTGTCGGGTGCCGTGTATGTCTTGCCGCGCGA ATTGCGTCGTAGAAAGGATGTTGTGAGATATTGTAGACGCAATCTGGATT TAGTTGGAAGGAATGATTAACTGTTGCGACTTCCATGTGTTGTTCAAGAA GCCACGTAGAATATGATATTGAAAGGTGTTGAAATATCTCATATTTGCCA TTCCTTCGTTGCGTTCGACACTTTTTGTGACGACTTAAAGTCGTCGGCGT TTTTCGATACTGTCGCCGTCATCGTCAGCTGCAGGTCTTTTACGAGCAGC CTGGATCATATCGTCATCAACATCATCAGGGTGACATTTTTCCATGTTGT TGGTGTACGGCGACAAGAAATAACCTGTCGACAAGGGAGCAGTGATTGAA GGGATGTCAGCGACACGTTGCCGTTTATTTGAAGGGTCATCGACGTCTTG GCTGTCAGTGTCGTCGACACGTTTTCGCTTGCCGTTTTCGATACTGACCT CATCATCATTAGCATCGTTCTCGTCATCTTCAACCTCACTTTCGAAGTCA TCTTCAATGACATCAATATTCTCAATGTTGTTAACGTAGTCCTCGTCGTC ATCAAGGTCACTTTCATAGCCATCGACGTCACTTTCAACGTCATCTTCGA ACTCTTCATCTGAGCGCATTATTCTTTTACGTCGACGTTCATATTCATTG AACTGTAACATGTAGTAGGAGACCAGTTCCGTAGAAGCCGTGTTTTCGAA AGTGCATCCGAGAGGAGGGCGTAAATCGAGGAAGGCTGGAACTCTTTTAG TGTTGTTTTTCATTGGTTCTTTGAAACGTCGATGTTCCTCAGCTGTTCCA GTCGTTCCAATGTTGTTATCGACTGGCGGCGGCATTCGAACGATTCTATA TGGCTTGTTAGCAGATGGACCTTGTGGTTGAGCGTCGAAGAGCTCTTCTA CTTGAGCGTCCACGTCCACGAGCCCTTCTGATTGATGTAATCGCTCTTGG AGCTGATGAATGAGGAGAAATGCTTGTTCAAATTCGTCGCCGACATTATC AAATTCGTCGCCGACATTATCAACTTGCTCACCTCCTAAAAATTCCAGAG GTTGAATTATTAGTTCAGCTGGTCGCTCATCTGGATCATCGATGACATCC ATAGGTTGTTCTTGTAGTGGCCCGGCGGGGTCAGCTATTTGCTCTTGAGG TGGCCCATGTTGGTTAGCTACTTGCTCTTGCGGTGGATCAACGAGGTTAA CCTCTTGCCCTTGTGGTTGTTCCGCTGGTTCAGCTTCTTCGGCTTCTTGT GGTTCATCCAAGGATAACCGTTCCATCGAATCTATGAGATTGAGAACTTC TGTGGATGGGAAATCCAGATGATGTGGTGTGTCAAAAGAGTTGTCTGACA ATACGAACTCTGGTGCGATTCCCTTTCCATTTCTGTTCTTGAAAGGATGT GAAGCAACTTTTTTCTTATGAGACCGGAATTTATGTTTCAAGGACTTCAT TTTGTTGGTCCCTTGCACATTGTAGCCAGTTCTCAAGAAAATATGCTCCT TGCTGATACGATGTTTGTTGAGCGAGGATTTCCCCAACTTTCGAATGTCG ATTGACGAATCGTTGTCAGGCTTTGAAAGATAAGTAGGCCACCATGCAAA GCCTTCTTTGGAGATGCTTTCGAATGAAAGATCTACATCATGTGTTCTGC TACCAAAAGCAGTTCTgttattcattttgaaattcactttttttcacAAT ATATATTTGACAATATTGATCAAATAAGACAACTGAAAACCCAAACGTGG CTGATCAGTTGGAG

Coding sequence (CDS) from alignment at sc0000002:28621..30434

>TCONS_00000620 ID=TCONS_00000620|Name=TCONS_00000620|organism=Clytia hemisphaerica|type=CDS|length=1491bp|location=Sequence derived from alignment at sc0000002:28621..30434 (Clytia hemisphaerica)
TTAAAGTCGTCGGCGTTTTTCGATACTGTCGCCGTCATCGTCAGCTGCAG
GTCTTTTACGAGCAGCCTGGATCATATCGTCATCAACATCATCAGGGTGA
CATTTTTCCATGTTGTTGGTGTACGGCGACAAGAAATAACCTGTCGACAA
GGGAGCAGTGATTGAAGGGATGTCAGCGACACGTTGCCGTTTATTTGAAG
GGTCATCGACGTCTTGGCTGTCAGTGTCGTCGACACGTTTTCGCTTGCCG
TTTTCGATACTGACCTCATCATCATTAGCATCGTTCTCGTCATCTTCAAC
CTCACTTTCGAAGTCATCTTCAATGACATCAATATTCTCAATGTTGTTAA
CGTAGTCCTCGTCGTCATCAAGGTCACTTTCATAGCCATCGACGTCACTT
TCAACGTCATCTTCGAACTCTTCATCTGAGCGCATTATTCTTTTACGTCG
ACGTTCATATTCATTGAACTGTAACATGTAGTAGGAGACCAGTTCCGTAG
AAGCCGTGTTTTCGAAAGTGCATCCGAGAGGAGGGCGTAAATCGAGGAAG
GCTGGAACTCTTTTAGTGTTGTTTTTCATTGGTTCTTTGAAACGTCGATG
TTCCTCAGCTGTTCCAGTCGTTCCAATGTTGTTATCGACTGGCGGCGGCA
TTCGAACGATTCTATATGGCTTGTTAGCAGATGGACCTTGTGGTTGAGCG
TCGAAGAGCTCTTCTACTTGAGCGTCCACGTCCACGAGCCCTTCTGATTG
ATGTAATCGCTCTTGGAGCTGATGAATGAGGAGAAATGCTTGTTCAAATT
CGTCGCCGACATTATCAAATTCGTCGCCGACATTATCAACTTGCTCACCT
CCTAAAAATTCCAGAGGTTGAATTATTAGTTCAGCTGGTCGCTCATCTGG
ATCATCGATGACATCCATAGGTTGTTCTTGTAGTGGCCCGGCGGGGTCAG
CTATTTGCTCTTGAGGTGGCCCATGTTGGTTAGCTACTTGCTCTTGCGGT
GGATCAACGAGGTTAACCTCTTGCCCTTGTGGTTGTTCCGCTGGTTCAGC
TTCTTCGGCTTCTTGTGGTTCATCCAAGGATAACCGTTCCATCGAATCTA
TGAGATTGAGAACTTCTGTGGATGGGAAATCCAGATGATGTGGTGTGTCA
AAAGAGTTGTCTGACAATACGAACTCTGGTGCGATTCCCTTTCCATTTCT
GTTCTTGAAAGGATGTGAAGCAACTTTTTTCTTATGAGACCGGAATTTAT
GTTTCAAGGACTTCATTTTGTTGGTCCCTTGCACATTGTAGCCAGTTCTC
AAGAAAATATGCTCCTTGCTGATACGATGTTTGTTGAGCGAGGATTTCCC
CAACTTTCGAATGTCGATTGACGAATCGTTGTCAGGCTTTGAAAGATAAG
TAGGCCACCATGCAAAGCCTTCTTTGGAGATGCTTTCGAATGAAAGATCT
ACATCATGTGTTCTGCTACCAAAAGCAGTTCTgttattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000366XLOC_000366Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000620-proteinTCONS_00000620-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000620-exon-sc0000002-1491911889:28621..30434TCONS_00000620-exon-sc0000002-1491911889:28621..30434Clytia hemisphaericaexon
TCONS_00000620-exon-sc0000002-1510915933:28621..30434TCONS_00000620-exon-sc0000002-1510915933:28621..30434Clytia hemisphaericaexon
TCONS_00000620-exon-sc0000002-1575043694:28621..30434TCONS_00000620-exon-sc0000002-1575043694:28621..30434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:28621..30434 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.176836 0.0646661 0.200223 0.244859 0.119237 0.0942224 0.0852565 0.0532107 0 0.0461452 0.0223948 0 0 0 0.0251033 0.0269397 0 0.0170081 0 0 0 0.0312734 0 0.0230419 0.0474653 0.127085 0 0.0323473 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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