TCONS_00000619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000619
Unique NameTCONS_00000619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000619 ID=TCONS_00000619|Name=TCONS_00000619|organism=Clytia hemisphaerica|type=transcript|length=423bp
atgCTAAGGGCAATAAAGCCTgtattttaaagtattttaaacaaaattcc
ATATCTTTAATACACAAGTAATGAATTCATTGCTTCATTTTACATGAGCT
GCAATCCCTCTTGATTTTCTCAATCTCCTTCCGAGCAACTCTTACATACT
CTCGAATAGTCGATATTGCTGATGGTTTTTGGCAAATTGTGAATATGGAG
GGAGCAGCACTGCATTTTGAAGTCGCCAGTGCAAAACATTTCTggaattt
tataaaagaagtgCATAGTCCACCATCATCCGCGGTGAGTTGACCACCAA
AAGGACACCATGGTCGAAAATTTGGCAGAATATCTTTGTAACAACTTGTG
ATTTTACCAGCTAAAGGATCCAATGTTAATGCCAcccatgtcaatccaat
gttgATGGTAGCAACATTCGGCc
Run BLAST on NCBI

protein sequence of TCONS_00000619-protein

>TCONS_00000619-protein ID=TCONS_00000619-protein|Name=TCONS_00000619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
PNVATINIGLTWVALTLDPLAGKITSCYKDILPNFRPWCPFGGQLTADDG
GLCTSFIKFQKCFALATSKCSAAPSIFTICQKPSAISTIREYVRVARKEI
EKIKRDCSSCKMKQ
Run BLAST on NCBI

transcript from alignment at sc0000002:8553..8975

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000619 ID=TCONS_00000619|Name=TCONS_00000619|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at sc0000002:8553..8975 (Clytia hemisphaerica)
gGCCGAATGTTGCTACCATcaacattggattgacatgggTGGCATTAACA TTGGATCCTTTAGCTGGTAAAATCACAAGTTGTTACAAAGATATTCTGCC AAATTTTCGACCATGGTGTCCTTTTGGTGGTCAACTCACCGCGGATGATG GTGGACTATGcacttcttttataaaattccAGAAATGTTTTGCACTGGCG ACTTCAAAATGCAGTGCTGCTCCCTCCATATTCACAATTTGCCAAAAACC ATCAGCAATATCGACTATTCGAGAGTATGTAAGAGTTGCTCGGAAGGAGA TTGAGAAAATCAAGAGGGATTGCAGCTCATGTAAAATGAAGCAATGAATT CATTACTTGTGTATTAAAGATATggaattttgtttaaaatactttaaaat acAGGCTTTATTGCCCTTAGcat

Coding sequence (CDS) from alignment at sc0000002:8553..8975

>TCONS_00000619 ID=TCONS_00000619|Name=TCONS_00000619|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000002:8553..8975 (Clytia hemisphaerica)
CCGAATGTTGCTACCATcaacattggattgacatgggTGGCATTAACATT
GGATCCTTTAGCTGGTAAAATCACAAGTTGTTACAAAGATATTCTGCCAA
ATTTTCGACCATGGTGTCCTTTTGGTGGTCAACTCACCGCGGATGATGGT
GGACTATGcacttcttttataaaattccAGAAATGTTTTGCACTGGCGAC
TTCAAAATGCAGTGCTGCTCCCTCCATATTCACAATTTGCCAAAAACCAT
CAGCAATATCGACTATTCGAGAGTATGTAAGAGTTGCTCGGAAGGAGATT
GAGAAAATCAAGAGGGATTGCAGCTCATGTAAAATGAAGCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000365XLOC_000365Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000619-proteinTCONS_00000619-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000619-exon-sc0000002-1491911889:8553..8975TCONS_00000619-exon-sc0000002-1491911889:8553..8975Clytia hemisphaericaexon
TCONS_00000619-exon-sc0000002-1510915933:8553..8975TCONS_00000619-exon-sc0000002-1510915933:8553..8975Clytia hemisphaericaexon
TCONS_00000619-exon-sc0000002-1575043694:8553..8975TCONS_00000619-exon-sc0000002-1575043694:8553..8975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:8553..8975 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49205 0.808327 0 0.183644 0.894275 0.883335 0.426283 1.19724 2.47468 2.07653 0.503884 4.9685 0.661546 1.60305 1.66135 1.01024 0.74672 0.892924 0 0 0.320578 0 0.570253 0.518443 0 0 0 0.970419 0.184007 1.12484
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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