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TCONS_00000616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000616
Unique NameTCONS_00000616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000616 ID=TCONS_00000616|Name=TCONS_00000616|organism=Clytia hemisphaerica|type=transcript|length=743bp
ATTGCATTACAATCcttTACACTTAGATGCACATTCATATGTCACGAAAA
CTCAGCAAAGTCGAATACATATTACACGTTTATCAATCTTCACGAATCGT
TATTCATTCTTCATGGTAAACATGCTGCATaaagttaaaaacaaatatca
aaataaaggtCGGATCTTGATCAAAATGTTGGGAAAAATGCTTGTCATAC
TGCTTTACATTTCTCCCGATAACGATGTATCCTGTTAACGATATATCCTG
TATCCTAATTATGCTGTACCCTGTTTACACTATATCCCGCTAACGTTGTA
TGCTATTTACGTTTTATCATGTTTACGTTCTATCCTGTTTACAATGTATA
ATGTTACGTTTCTGGTTTTATTATCACTGGTGAATGTTCTCATGATTGTA
CCTTTGAATTTGATTGTACTTTTGGAGTAACGGAATTGTATGTTTTGTGG
ATGATTCAATGTTTGTTATCAGACACTATTTTGCATGGAGAATAATGGAc
ataaattttcacaaaatgatatgattttgtaaagttttatttcggaataa
accagccgaggctggaaggtcagccaatagagcttagctagatagcttta
ataagtgggttaacagatgtaagagatgtacatgttttttttttataagc
aagtgtctgcccctacatcaggctcgcattatgcttagcattctattgtt
ctcaaacaatagagccattgtttgggtaccaaaaactgagcct
Run BLAST on NCBI

transcript from alignment at sc0000002:1757946..1759041-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000616 ID=TCONS_00000616|Name=TCONS_00000616|organism=Clytia hemisphaerica|type=transcript|length=1096bp|location=Sequence derived from alignment at sc0000002:1757946..1759041- (Clytia hemisphaerica)
ATTGCATTACAATCGTGAGTATAACAAAATTTAACTATTCAATTTCTAGT CATCTTTATTCACTATGAAGAAATTGGAAAAATGGTTTTGAAAATTTCAT AAGGGTATAAGGTTCCTTATTGTTCCGAACATACATCTTGAAATTTCTGT CTGCCACTTTTGATAAATTATATATATATTAAATCTTAGCTTAGTTGGGA GAGTAATTGCCCTCCAAGCGAGAGGTCGTAAGTTCAATCCTAACTCGATT CGTTACCTTTGAGAGAATTGGGAAGTACATTAGTGCGGAATCTATCGACT CTTATAAACGTTTATTTTCTTTTATCAAAAATCCTCTAATTTCATTGTTT GTTTTTTTCATTTTAAGCTTTACACTTAGATGCACATTCATATGTCACGA AAACTCAGCAAAGTCGAATACATATTACACGTTTATCAATCTTCACGAAT CGTTATTCATTCTTCATGGTAAACATGCTGCATAAAGTTAAAAACAAATA TCAAAATAAAGGTCGGATCTTGATCAAAATGTTGGGAAAAATGCTTGTCA TACTGCTTTACATTTCTCCCGATAACGATGTATCCTGTTAACGATATATC CTGTATCCTAATTATGCTGTACCCTGTTTACACTATATCCCGCTAACGTT GTATGCTATTTACGTTTTATCATGTTTACGTTCTATCCTGTTTACAATGT ATAATGTTACGTTTCTGGTTTTATTATCACTGGTGAATGTTCTCATGATT GTACCTTTGAATTTGATTGTACTTTTGGAGTAACGGAATTGTATGTTTTG TGGATGATTCAATGTTTGTTATCAGACACTATTTTGCATGGAGAATAATG GACATAAATTTTCACAAAATGATATGATTTTGTAAAGTTTTATTTCGGAA TAAACCAGCCGAGGCTGGAAGGTCAGCCAATAGAGCTTAGCTAGATAGCT TTAATAAGTGGGTTAACAGATGTAAGAGATGTACATGTTTTTTTTTTATA AGCAAGTGTCTGCCCCTACATCAGGCTCGCATTATGCTTAGCATTCTATT GTTCTCAAACAATAGAGCCATTGTTTGGGTACCAAAAACTGAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000362XLOC_000362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000616-exon-sc0000002-1575043694:1759028..1759041TCONS_00000616-exon-sc0000002-1575043694:1759028..1759041Clytia hemisphaericaexon
TCONS_00000616-exon-sc0000002-1575043694:1757946..1758674TCONS_00000616-exon-sc0000002-1575043694:1757946..1758674Clytia hemisphaericaexon
TCONS_00000616-exon-sc0000002-1510915933:1759028..1759041TCONS_00000616-exon-sc0000002-1510915933:1759028..1759041Clytia hemisphaericaexon
TCONS_00000616-exon-sc0000002-1510915933:1757946..1758674TCONS_00000616-exon-sc0000002-1510915933:1757946..1758674Clytia hemisphaericaexon
TCONS_00000616-exon-sc0000002-1491911889:1759028..1759041TCONS_00000616-exon-sc0000002-1491911889:1759028..1759041Clytia hemisphaericaexon
TCONS_00000616-exon-sc0000002-1491911889:1757946..1758674TCONS_00000616-exon-sc0000002-1491911889:1757946..1758674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1757946..1759041 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.478049 0.793015 4.30915 5.30937 1.42696 1.03907 1.46973 1.06706 1.81524 1.90544 1.27377 2.49365 1.64689 3.33453 0.796805 0.824963 0.537322 0.894192 0.61561 0.717407 2.03821 2.58179 0.907832 2.24125 0.238687 1.16192 6.07657 4.41504 8.08978 8.80505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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