TCONS_00000614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000614
Unique NameTCONS_00000614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000614 ID=TCONS_00000614|Name=TCONS_00000614|organism=Clytia hemisphaerica|type=transcript|length=439bp
AACAATTACAAAGAGAGCTCTATGAGGcaaaggaagaagaaaaaagactt
CAACTTCAACGTGAATTGGAAGAGAGAAGGCGAAAAGTAGAAGAACTGAG
aaaACGATTGGAGGAGGAGCGTGAACGACAACGCAAAGAACAAGAACGTT
TAATACGCATTCACCGTCAACTTGAAGCTGAAGGTAAACGGTTAGAAAAG
GAAGCACGAAAAAGAGCTGAAGCTATGAGAAATAAGGAAGCTGTTCAACA
GAAACTTCGTCGAATTGGTAATTGTCCTGCTGGGTATCAATGGCGGAAAG
TGGGTGGAGGATGGCGTTGTAGTGCAGGAGGTCATTTTGTTTCTAACGAA
CAATTAGAGAGAGAATTTACACACGATGTTCCTTTCCCAACGCTCGGTAG
CCGTTTCTAATGAACTGGTACAAACACTTAAGGGCTCTN
Run BLAST on NCBI

protein sequence of TCONS_00000614-protein

>TCONS_00000614-protein ID=TCONS_00000614-protein|Name=TCONS_00000614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
QLQRELYEAKEEEKRLQLQRELEERRRKVEELRKRLEEERERQRKEQERL
IRIHRQLEAEGKRLEKEARKRAEAMRNKEAVQQKLRRIGNCPAGYQWRKV
GGGWRCSAGGHFVSNEQLEREFTHDVPFPTLGSRF
Run BLAST on NCBI

transcript from alignment at sc0000002:1731580..1732582-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000614 ID=TCONS_00000614|Name=TCONS_00000614|organism=Clytia hemisphaerica|type=transcript|length=1003bp|location=Sequence derived from alignment at sc0000002:1731580..1732582- (Clytia hemisphaerica)
AACAATTACAAAGAGAGCTCTATGAGGCAAAGGAAGAAGAAAAAAGACTT
CAACTTCAACGTGAATTGGAAGAGAGAAGGCGAAAAGTAGAAGAACTGAG
GTAAATTCGAGACCCTTTTGTTTAACTGACACTTCCAGGGTGGCATTTAG
AAAAACATTACAGATACAGATCAATTTGTTATCTTTTTTAGACAAAGCTA
CTATAAAAATTCGGCTTTCTCGGTCAGAGCTTAATAAAAAGAACCTAAAA
AAAACGACAATGAAAAATTGGTCAAATCTCACCAGATAAAACATCCAAGT
ANCTTAAAAAGAACCTAAAAAAAACGACAATGAAAAATTGGTCAAATCTC
ACCAGATAAAACATCCAAGTAAGAAAGTAAAAAATCCCCTCGCAATATTC
AACTATGGGGTAATTGTATTGTTGTATTGTATTGTATTGTATTAATACTT
TAAGGGCAGAAAGTTTTGCGGGCAGAAAGTTTGAGTAGGAAAGTTAATTT
TTCGCGAAAAAAAATTTCGCGTTTTTCAGGTTTAATTTCTTACCTGGCAG
AAACTTTCGCGAAAAAGGATCAAAATCGTGAAAAACGCGAAAGTTTCTGC
CCTTAAATTAGTATTAATAGTATTAATTCTATTATTGTATTATTATACTA
ATTTTGATTTTAAGAAAACGATTGGAGGAGGAGCGTGAACGACAACGCAA
AGAACAAGAACGTTTAATACGCATTCACCGTCAACTTGAAGCTGAAGGTA
AACGGTTAGAAAAGGAAGCACGAAAAAGAGCTGAAGCTATGAGAAATAAG
GAAGCTGTTCAACAGAAACTTCGTCGAATTGGTAATTGTCCTGCTGGGTA
TCAATGGCGGAAAGTGGGTGGAGGATGGCGTTGTAGTGCAGGAGGTCATT
TTGTTTCTAACGAACAATTAGAGAGAGAATTTACACACGATGTTCCTTTC
CCAACGCTCGGTAGCCGTTTCTAATGAACTGGTACAAACACTTAAGGGCT
CTN

Coding sequence (CDS) from alignment at sc0000002:1731580..1732582-

>TCONS_00000614 ID=TCONS_00000614|Name=TCONS_00000614|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000002:1731580..1732582- (Clytia hemisphaerica)
AAAACGATTGGAGGAGGAGCGTGAACGACAACGCAAAGAACAAGAACGTT
TAATACGCATTCACCGTCAACTTGAAGCTGAAGGTAAACGGTTAGAAAAG
GAAGCACGAAAAAGAGCTGAAGCTATGAGAAATAAGGAAGCTGTTCAACA
GAAACTTCGTCGAATTGGTAATTGTCCTGCTGGGTATCAATGGCGGAAAG
TGGGTGGAGGATGGCGTTGTAGTGCAGGAGGTCATTTTGTTTCTAACGAA
CAATTAGAGAGAGAATTTACACACGATGTTCCTTTCCCAACGCTCGGTAG
CCGTTTCTAACAATTACAAAGAGAGCTCTATGAGGCAAAGGAAGAAGAAA
AAAGACTTCAACTTCAACGTGAATTGGAAGAGAGAAGGCGAAAAGTAGAA
GAACTGAGAAAACGATTGGAGGAGGAGCGTGAACGACAACGCAAAGAACA
AGAACGTTTAATACGCATTCACCGTCAACTTGAAGCTGAAGGTAAACGGT
TAGAAAAGGAAGCACGAAAAAGAGCTGAAGCTATGAGAAATAAGGAAGCT
GTTCAACAGAAACTTCGTCGAATTGGTAATTGTCCTGCTGGGTATCAATG
GCGGAAAGTGGGTGGAGGATGGCGTTGTAGTGCAGGAGGTCATTTTGTTT
CTAACGAACAATTAGAGAGAGAATTTACACACGATGTTCCTTTCCCAACG
CTCGGTAGCCGTTTCTAACAATTACAAAGAGAGCTCTATGAGGCAAAGGA
AGAAGAAAAAAGACTTCAACTTCAACGTGAATTGGAAGAGAGAAGGCGAA
AAGTAGAAGAACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000360XLOC_000360Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000614-proteinTCONS_00000614-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000614-exon-sc0000002-1575043694:1732483..1732582TCONS_00000614-exon-sc0000002-1575043694:1732483..1732582Clytia hemisphaericaexon
TCONS_00000614-exon-sc0000002-1575043694:1731580..1731918TCONS_00000614-exon-sc0000002-1575043694:1731580..1731918Clytia hemisphaericaexon
TCONS_00000614-exon-sc0000002-1510915933:1732483..1732582TCONS_00000614-exon-sc0000002-1510915933:1732483..1732582Clytia hemisphaericaexon
TCONS_00000614-exon-sc0000002-1510915933:1731580..1731918TCONS_00000614-exon-sc0000002-1510915933:1731580..1731918Clytia hemisphaericaexon
TCONS_00000614-exon-sc0000002-1491911889:1732483..1732582TCONS_00000614-exon-sc0000002-1491911889:1732483..1732582Clytia hemisphaericaexon
TCONS_00000614-exon-sc0000002-1491911889:1731580..1731918TCONS_00000614-exon-sc0000002-1491911889:1731580..1731918Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1731580..1732582 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0936139	0	0	1.0971	0.378862	1.47437	0.294023	0.974035	0	0.741569	0	5.03252e-08	1.87015	2.63598	0.0120514	0	0.101928	0	0	0.61122	0	0	0	0.808092	0	1.00906	0	2.16683	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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