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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000614 ID=TCONS_00000614|Name=TCONS_00000614|organism=Clytia hemisphaerica|type=transcript|length=439bp AACAATTACAAAGAGAGCTCTATGAGGcaaaggaagaagaaaaaagactt CAACTTCAACGTGAATTGGAAGAGAGAAGGCGAAAAGTAGAAGAACTGAG aaaACGATTGGAGGAGGAGCGTGAACGACAACGCAAAGAACAAGAACGTT TAATACGCATTCACCGTCAACTTGAAGCTGAAGGTAAACGGTTAGAAAAG GAAGCACGAAAAAGAGCTGAAGCTATGAGAAATAAGGAAGCTGTTCAACA GAAACTTCGTCGAATTGGTAATTGTCCTGCTGGGTATCAATGGCGGAAAG TGGGTGGAGGATGGCGTTGTAGTGCAGGAGGTCATTTTGTTTCTAACGAA CAATTAGAGAGAGAATTTACACACGATGTTCCTTTCCCAACGCTCGGTAG CCGTTTCTAATGAACTGGTACAAACACTTAAGGGCTCTN Run BLAST on NCBI protein sequence of TCONS_00000614-protein >TCONS_00000614-protein ID=TCONS_00000614-protein|Name=TCONS_00000614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
QLQRELYEAKEEEKRLQLQRELEERRRKVEELRKRLEEERERQRKEQERL IRIHRQLEAEGKRLEKEARKRAEAMRNKEAVQQKLRRIGNCPAGYQWRKV GGGWRCSAGGHFVSNEQLEREFTHDVPFPTLGSRF Run BLAST on NCBI transcript from alignment at sc0000002:1731580..1732582- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000614 ID=TCONS_00000614|Name=TCONS_00000614|organism=Clytia hemisphaerica|type=transcript|length=1003bp|location=Sequence derived from alignment at sc0000002:1731580..1732582- (Clytia hemisphaerica) AACAATTACAAAGAGAGCTCTATGAGGCAAAGGAAGAAGAAAAAAGACTT
CAACTTCAACGTGAATTGGAAGAGAGAAGGCGAAAAGTAGAAGAACTGAG
GTAAATTCGAGACCCTTTTGTTTAACTGACACTTCCAGGGTGGCATTTAG
AAAAACATTACAGATACAGATCAATTTGTTATCTTTTTTAGACAAAGCTA
CTATAAAAATTCGGCTTTCTCGGTCAGAGCTTAATAAAAAGAACCTAAAA
AAAACGACAATGAAAAATTGGTCAAATCTCACCAGATAAAACATCCAAGT
ANCTTAAAAAGAACCTAAAAAAAACGACAATGAAAAATTGGTCAAATCTC
ACCAGATAAAACATCCAAGTAAGAAAGTAAAAAATCCCCTCGCAATATTC
AACTATGGGGTAATTGTATTGTTGTATTGTATTGTATTGTATTAATACTT
TAAGGGCAGAAAGTTTTGCGGGCAGAAAGTTTGAGTAGGAAAGTTAATTT
TTCGCGAAAAAAAATTTCGCGTTTTTCAGGTTTAATTTCTTACCTGGCAG
AAACTTTCGCGAAAAAGGATCAAAATCGTGAAAAACGCGAAAGTTTCTGC
CCTTAAATTAGTATTAATAGTATTAATTCTATTATTGTATTATTATACTA
ATTTTGATTTTAAGAAAACGATTGGAGGAGGAGCGTGAACGACAACGCAA
AGAACAAGAACGTTTAATACGCATTCACCGTCAACTTGAAGCTGAAGGTA
AACGGTTAGAAAAGGAAGCACGAAAAAGAGCTGAAGCTATGAGAAATAAG
GAAGCTGTTCAACAGAAACTTCGTCGAATTGGTAATTGTCCTGCTGGGTA
TCAATGGCGGAAAGTGGGTGGAGGATGGCGTTGTAGTGCAGGAGGTCATT
TTGTTTCTAACGAACAATTAGAGAGAGAATTTACACACGATGTTCCTTTC
CCAACGCTCGGTAGCCGTTTCTAATGAACTGGTACAAACACTTAAGGGCT
CTN Coding sequence (CDS) from alignment at sc0000002:1731580..1732582- >TCONS_00000614 ID=TCONS_00000614|Name=TCONS_00000614|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000002:1731580..1732582- (Clytia hemisphaerica) AAAACGATTGGAGGAGGAGCGTGAACGACAACGCAAAGAACAAGAACGTT TAATACGCATTCACCGTCAACTTGAAGCTGAAGGTAAACGGTTAGAAAAG GAAGCACGAAAAAGAGCTGAAGCTATGAGAAATAAGGAAGCTGTTCAACA GAAACTTCGTCGAATTGGTAATTGTCCTGCTGGGTATCAATGGCGGAAAG TGGGTGGAGGATGGCGTTGTAGTGCAGGAGGTCATTTTGTTTCTAACGAA CAATTAGAGAGAGAATTTACACACGATGTTCCTTTCCCAACGCTCGGTAG CCGTTTCTAACAATTACAAAGAGAGCTCTATGAGGCAAAGGAAGAAGAAA AAAGACTTCAACTTCAACGTGAATTGGAAGAGAGAAGGCGAAAAGTAGAA GAACTGAGAAAACGATTGGAGGAGGAGCGTGAACGACAACGCAAAGAACA AGAACGTTTAATACGCATTCACCGTCAACTTGAAGCTGAAGGTAAACGGT TAGAAAAGGAAGCACGAAAAAGAGCTGAAGCTATGAGAAATAAGGAAGCT GTTCAACAGAAACTTCGTCGAATTGGTAATTGTCCTGCTGGGTATCAATG GCGGAAAGTGGGTGGAGGATGGCGTTGTAGTGCAGGAGGTCATTTTGTTT CTAACGAACAATTAGAGAGAGAATTTACACACGATGTTCCTTTCCCAACG CTCGGTAGCCGTTTCTAACAATTACAAAGAGAGCTCTATGAGGCAAAGGA AGAAGAAAAAAGACTTCAACTTCAACGTGAATTGGAAGAGAGAAGGCGAA AAGTAGAAGAACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000614-exon-sc0000002-1575043694:1732483..1732582 | TCONS_00000614-exon-sc0000002-1575043694:1732483..1732582 | Clytia hemisphaerica | exon |
TCONS_00000614-exon-sc0000002-1575043694:1731580..1731918 | TCONS_00000614-exon-sc0000002-1575043694:1731580..1731918 | Clytia hemisphaerica | exon |
TCONS_00000614-exon-sc0000002-1510915933:1732483..1732582 | TCONS_00000614-exon-sc0000002-1510915933:1732483..1732582 | Clytia hemisphaerica | exon |
TCONS_00000614-exon-sc0000002-1510915933:1731580..1731918 | TCONS_00000614-exon-sc0000002-1510915933:1731580..1731918 | Clytia hemisphaerica | exon |
TCONS_00000614-exon-sc0000002-1491911889:1732483..1732582 | TCONS_00000614-exon-sc0000002-1491911889:1732483..1732582 | Clytia hemisphaerica | exon |
TCONS_00000614-exon-sc0000002-1491911889:1731580..1731918 | TCONS_00000614-exon-sc0000002-1491911889:1731580..1731918 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000002 | supercontig | sc0000002:1731580..1732582 - |
Blast
The following BLAST results are available for this feature:
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