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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000613 ID=TCONS_00000613|Name=TCONS_00000613|organism=Clytia hemisphaerica|type=transcript|length=936bp
CTTATCTCCATGAAGTTAAAAAAGCTGCCAAAATGGTCGACGTCAATCTT
ACCAAAAGTTTCAACTTACCAGCAATCGAAGAGACGCACAAAGCAAAACG
CGAGGGGAAAGGACTAGTATCAGAAGTTGTATACCATCTTAAACAATATC
AACGTGTGGTCGAGATCCAGGAATTGACTGGCGAAAAGTCAGACATCTTT
TTGGACTACATACAAGAATCGATGCCTGCTGGAGTCAAAATTGATATCAG
TCTAGTGAGTGCTTCTGTTAACTGTATTAACTGTGAGATTCCAACATTTT
TATAGGAAAGAAAGCTCCGCCGAACCATTATCTAAGAATAGCACACTGCG
GCGAATCTAAAGGTCGCTTCCCACTCAGCTTTTTTTGGTCGCAGACCAAT
GCGCACGGCTCAAATATCTCTGACATCCTTTGCACTTTTGCTATAGTTAT
TGGAACATCCCATATTCAAAACACTTTCTAGACCTTCATTTGCTTGTTCA
CCTCTCCATTCTCCTGGTATGAGTTGGCCGTTGTGTTCATGATCGACATA
ATTAGGGGGACAATAGTTATTACGGTTTTCGTtggaaaaatgaatcAAAA
AATTGTGCAGGGCGACTATTGCTTTCGTAGGCTCCTGTGCAAGTTCAGCA
GATGCTGTTATTGGTCTGCTAAACAATCTAAAGCGAGATGTAGCTATTCC
AAAAGCATTTTCAACAACTCGTCGTGCTCTCGATATTCGATAATTTGCAA
TAACTTTCTTTTCTTGTGGATCGGATCTAGGATAAGGTTCTACTAAATTA
TTGCGAAGAGTGAATGCTTCATCCCCTAAAAATACATAAGGAAAGTACTT
GTTTGAACCATTTAACTTCCTTGGATTTGGCAGGTCAAAATGTTCATTTA
TAATTGCACGTCCAAAGTTGGAACTGGCAAAACTAC Run BLAST on NCBI transcript from alignment at sc0000002:1637817..1639564- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000613 ID=TCONS_00000613|Name=TCONS_00000613|organism=Clytia hemisphaerica|type=transcript|length=1748bp|location=Sequence derived from alignment at sc0000002:1637817..1639564- (Clytia hemisphaerica)
CTTATCTCCATGAAGTTAAAAAAGCTGCCAAAATGGTCGACGTCAATCTT
ACCAAAAGGTCAGGGTTTCTGCGAATGTTTGAAGCGAAAATTTTGACAAA
AAATTAGCAGTTGCTTGATTTTTTGATTTTTAGCCTAGACATGCATCCAT
CAACACGCCTTGGATTAAAAAATCTATGAAATCTTGACAATGTCGGTACT
CAGCTTTTCAATGTAGGAATAAGTGATAATGTAACCCTGTAAAAGCTTTT
CGTTCTTTAGCGTATTCATGATATGCACCATTACAATGTCTTCTGGCTTT
ATACCATGGACCTAACAGCTGATTGGTTGTAAGTGACGTCAAATCAGTCA
GTACATCGCTTTCAACCAATCAGCTGTTGGGTCCATAAAAGACATTGTAA
TGGTACATATCATGAATGATACACTTTTTCGAGATTAATACAATGATTTT
TTTGACATCAAGCAGCATCAAGAATATTGTTTTTTCCATGGTATCAGTAT
ACTTCATAGCATTTATTATGGTTTTGTTGTAGTTTCAACTTACCAGCAAT
CGAAGAGACGCACAAAGCAAAACGCGAGGGGAAAGGACTAGTATCAGAAG
TTGTATACCATCTTAAACAATATCAACGTGTGGTCGAGGTGAGAATCTAC
AAATCTTTTCGGAAACCAAATCAAATTTTCATCGATTCTCCAATCCTTTG
CCAAATTTAAATGACTTGCCAAAAGTTTCTTTTTTTTAAATGAATTAACG
TAGTGTTTTCTAGCGTCAACATTATACAATCTCTTACAGTCTTACAGTCT
TTTTAACTCGAACTTGAATGACTCTAATGACTCCTTAACTCGAACAAGTT
TCCCCGTTCCTTTAGTTAACAATACCTTATAAACCTTACTCCATAACTCG
AACAAATTTGTTTTCCCCGTGCGGGTTCGAGTTACGGAGACTCAACTGTA
ATAGCAAAGGTATTTTTTTATCTCAGATCCAGGAATTGACTGGCGAAAAG
TCAGACATCTTTTTGGACTACATACAAGAATCGATGCCTGCTGGAGTCAA
AATTGATATCAGTCTAGTGAGTGCTTCTGTTAACTGTATTAACTGTGAGA
TTCCAACATTTTTATAGGAAAGAAAGCTCCGCCGAACCATTATCTAAGAA
TAGCACACTGCGGCGAATCTAAAGGTCGCTTCCCACTCAGCTTTTTTTGG
TCGCAGACCAATGCGCACGGCTCAAATATCTCTGACATCCTTTGCACTTT
TGCTATAGTTATTGGAACATCCCATATTCAAAACACTTTCTAGACCTTCA
TTTGCTTGTTCACCTCTCCATTCTCCTGGTATGAGTTGGCCGTTGTGTTC
ATGATCGACATAATTAGGGGGACAATAGTTATTACGGTTTTCGTTGGAAA
AATGAATCAAAAAATTGTGCAGGGCGACTATTGCTTTCGTAGGCTCCTGT
GCAAGTTCAGCAGATGCTGTTATTGGTCTGCTAAACAATCTAAAGCGAGA
TGTAGCTATTCCAAAAGCATTTTCAACAACTCGTCGTGCTCTCGATATTC
GATAATTTGCAATAACTTTCTTTTCTTGTGGATCGGATCTAGGATAAGGT
TCTACTAAATTATTGCGAAGAGTGAATGCTTCATCCCCTAAAAATACATA
AGGAAAGTACTTGTTTGAACCATTTAACTTCCTTGGATTTGGCAGGTCAA
AATGTTCATTTATAATTGCACGTCCAAAGTTGGAACTGGCAAAACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000613-exon-sc0000002-1575043694:1639507..1639564 | TCONS_00000613-exon-sc0000002-1575043694:1639507..1639564 | Clytia hemisphaerica | exon |
| TCONS_00000613-exon-sc0000002-1575043694:1638927..1639032 | TCONS_00000613-exon-sc0000002-1575043694:1638927..1639032 | Clytia hemisphaerica | exon |
| TCONS_00000613-exon-sc0000002-1575043694:1637817..1638588 | TCONS_00000613-exon-sc0000002-1575043694:1637817..1638588 | Clytia hemisphaerica | exon |
| TCONS_00000613-exon-sc0000002-1510915933:1639507..1639564 | TCONS_00000613-exon-sc0000002-1510915933:1639507..1639564 | Clytia hemisphaerica | exon |
| TCONS_00000613-exon-sc0000002-1510915933:1638927..1639032 | TCONS_00000613-exon-sc0000002-1510915933:1638927..1639032 | Clytia hemisphaerica | exon |
| TCONS_00000613-exon-sc0000002-1510915933:1637817..1638588 | TCONS_00000613-exon-sc0000002-1510915933:1637817..1638588 | Clytia hemisphaerica | exon |
| TCONS_00000613-exon-sc0000002-1491911889:1639507..1639564 | TCONS_00000613-exon-sc0000002-1491911889:1639507..1639564 | Clytia hemisphaerica | exon |
| TCONS_00000613-exon-sc0000002-1491911889:1638927..1639032 | TCONS_00000613-exon-sc0000002-1491911889:1638927..1639032 | Clytia hemisphaerica | exon |
| TCONS_00000613-exon-sc0000002-1491911889:1637817..1638588 | TCONS_00000613-exon-sc0000002-1491911889:1637817..1638588 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1637817..1639564 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027806 | HARBI1_dom |
Blast
The following BLAST results are available for this feature:
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