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TCONS_00000613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000613
Unique NameTCONS_00000613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length936

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000613 ID=TCONS_00000613|Name=TCONS_00000613|organism=Clytia hemisphaerica|type=transcript|length=936bp
CTTATCTCCATGAAGTTAAAAAAGCTGCCAAAATGGTCGACGTCAATCTT
ACCAAAAGTTTCAACTTACCAGCAATCGAAGAGACGCACAAAGCAAAACG
CGAGGGGAAAGGACTAGTATCAGAAGTTGTATACCATCTTAAACAATATC
AACGTGTGGTCGAGATCCAGGAATTGACTGGCGAAAAGTCAGACATCTTT
TTGGACTACATACAAGAATCGATGCCTGCTGGAGTCAAAATTGATATCAG
TCTAGTGAGTGCTTCTGTTAACTGTATTAACTGTGAGATTCCAACATTTT
TATAGGAAAGAAAGCTCCGCCGAACCATTATCTAAGAATAGCACACTGCG
GCGAATCTAAAGGTCGCTTCCCACTCAGCTTTTTTTGGTCGCAGACCAAT
GCGCACGGCTCAAATATCTCTGACATCCTTTGCACTTTTGCTATAGTTAT
TGGAACATCCCATATTCAAAACACTTTCTAGACCTTCATTTGCTTGTTCA
CCTCTCCATTCTCCTGGTATGAGTTGGCCGTTGTGTTCATGATCGACATA
ATTAGGGGGACAATAGTTATTACGGTTTTCGTtggaaaaatgaatcAAAA
AATTGTGCAGGGCGACTATTGCTTTCGTAGGCTCCTGTGCAAGTTCAGCA
GATGCTGTTATTGGTCTGCTAAACAATCTAAAGCGAGATGTAGCTATTCC
AAAAGCATTTTCAACAACTCGTCGTGCTCTCGATATTCGATAATTTGCAA
TAACTTTCTTTTCTTGTGGATCGGATCTAGGATAAGGTTCTACTAAATTA
TTGCGAAGAGTGAATGCTTCATCCCCTAAAAATACATAAGGAAAGTACTT
GTTTGAACCATTTAACTTCCTTGGATTTGGCAGGTCAAAATGTTCATTTA
TAATTGCACGTCCAAAGTTGGAACTGGCAAAACTAC
Run BLAST on NCBI

transcript from alignment at sc0000002:1637817..1639564-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000613 ID=TCONS_00000613|Name=TCONS_00000613|organism=Clytia hemisphaerica|type=transcript|length=1748bp|location=Sequence derived from alignment at sc0000002:1637817..1639564- (Clytia hemisphaerica)
CTTATCTCCATGAAGTTAAAAAAGCTGCCAAAATGGTCGACGTCAATCTT ACCAAAAGGTCAGGGTTTCTGCGAATGTTTGAAGCGAAAATTTTGACAAA AAATTAGCAGTTGCTTGATTTTTTGATTTTTAGCCTAGACATGCATCCAT CAACACGCCTTGGATTAAAAAATCTATGAAATCTTGACAATGTCGGTACT CAGCTTTTCAATGTAGGAATAAGTGATAATGTAACCCTGTAAAAGCTTTT CGTTCTTTAGCGTATTCATGATATGCACCATTACAATGTCTTCTGGCTTT ATACCATGGACCTAACAGCTGATTGGTTGTAAGTGACGTCAAATCAGTCA GTACATCGCTTTCAACCAATCAGCTGTTGGGTCCATAAAAGACATTGTAA TGGTACATATCATGAATGATACACTTTTTCGAGATTAATACAATGATTTT TTTGACATCAAGCAGCATCAAGAATATTGTTTTTTCCATGGTATCAGTAT ACTTCATAGCATTTATTATGGTTTTGTTGTAGTTTCAACTTACCAGCAAT CGAAGAGACGCACAAAGCAAAACGCGAGGGGAAAGGACTAGTATCAGAAG TTGTATACCATCTTAAACAATATCAACGTGTGGTCGAGGTGAGAATCTAC AAATCTTTTCGGAAACCAAATCAAATTTTCATCGATTCTCCAATCCTTTG CCAAATTTAAATGACTTGCCAAAAGTTTCTTTTTTTTAAATGAATTAACG TAGTGTTTTCTAGCGTCAACATTATACAATCTCTTACAGTCTTACAGTCT TTTTAACTCGAACTTGAATGACTCTAATGACTCCTTAACTCGAACAAGTT TCCCCGTTCCTTTAGTTAACAATACCTTATAAACCTTACTCCATAACTCG AACAAATTTGTTTTCCCCGTGCGGGTTCGAGTTACGGAGACTCAACTGTA ATAGCAAAGGTATTTTTTTATCTCAGATCCAGGAATTGACTGGCGAAAAG TCAGACATCTTTTTGGACTACATACAAGAATCGATGCCTGCTGGAGTCAA AATTGATATCAGTCTAGTGAGTGCTTCTGTTAACTGTATTAACTGTGAGA TTCCAACATTTTTATAGGAAAGAAAGCTCCGCCGAACCATTATCTAAGAA TAGCACACTGCGGCGAATCTAAAGGTCGCTTCCCACTCAGCTTTTTTTGG TCGCAGACCAATGCGCACGGCTCAAATATCTCTGACATCCTTTGCACTTT TGCTATAGTTATTGGAACATCCCATATTCAAAACACTTTCTAGACCTTCA TTTGCTTGTTCACCTCTCCATTCTCCTGGTATGAGTTGGCCGTTGTGTTC ATGATCGACATAATTAGGGGGACAATAGTTATTACGGTTTTCGTTGGAAA AATGAATCAAAAAATTGTGCAGGGCGACTATTGCTTTCGTAGGCTCCTGT GCAAGTTCAGCAGATGCTGTTATTGGTCTGCTAAACAATCTAAAGCGAGA TGTAGCTATTCCAAAAGCATTTTCAACAACTCGTCGTGCTCTCGATATTC GATAATTTGCAATAACTTTCTTTTCTTGTGGATCGGATCTAGGATAAGGT TCTACTAAATTATTGCGAAGAGTGAATGCTTCATCCCCTAAAAATACATA AGGAAAGTACTTGTTTGAACCATTTAACTTCCTTGGATTTGGCAGGTCAA AATGTTCATTTATAATTGCACGTCCAAAGTTGGAACTGGCAAAACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000359XLOC_000359Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000613-exon-sc0000002-1575043694:1639507..1639564TCONS_00000613-exon-sc0000002-1575043694:1639507..1639564Clytia hemisphaericaexon
TCONS_00000613-exon-sc0000002-1575043694:1638927..1639032TCONS_00000613-exon-sc0000002-1575043694:1638927..1639032Clytia hemisphaericaexon
TCONS_00000613-exon-sc0000002-1575043694:1637817..1638588TCONS_00000613-exon-sc0000002-1575043694:1637817..1638588Clytia hemisphaericaexon
TCONS_00000613-exon-sc0000002-1510915933:1639507..1639564TCONS_00000613-exon-sc0000002-1510915933:1639507..1639564Clytia hemisphaericaexon
TCONS_00000613-exon-sc0000002-1510915933:1638927..1639032TCONS_00000613-exon-sc0000002-1510915933:1638927..1639032Clytia hemisphaericaexon
TCONS_00000613-exon-sc0000002-1510915933:1637817..1638588TCONS_00000613-exon-sc0000002-1510915933:1637817..1638588Clytia hemisphaericaexon
TCONS_00000613-exon-sc0000002-1491911889:1639507..1639564TCONS_00000613-exon-sc0000002-1491911889:1639507..1639564Clytia hemisphaericaexon
TCONS_00000613-exon-sc0000002-1491911889:1638927..1639032TCONS_00000613-exon-sc0000002-1491911889:1638927..1639032Clytia hemisphaericaexon
TCONS_00000613-exon-sc0000002-1491911889:1637817..1638588TCONS_00000613-exon-sc0000002-1491911889:1637817..1638588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1637817..1639564 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.9944 13.6954 7.28859 5.31169 2.24296 1.67351 2.64065 2.70189 2.472 2.46146 2.1491 2.09793 1.16619 1.46924 1.56162 2.01186 4.47016 2.76805 0.334146 0.602311 1.8403 2.41761 8.76405 8.02108 2.26428 1.50897 1.77767 1.93771 4.09668 4.21454
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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