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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000612 ID=TCONS_00000612|Name=TCONS_00000612|organism=Clytia hemisphaerica|type=transcript|length=1597bpRun BLAST on NCBI protein sequence of Secreted carboxypeptidase >TCONS_00000612-protein ID=TCONS_00000612-protein|Name=Secreted carboxypeptidase|organism=Clytia hemisphaerica|type=polypeptide|length=363bp KASDLEDWLCWRNTRRWRPVFLLRRTMKRFLVSVLCLVLLIQNVESQRKNRun BLAST on NCBI transcript from alignment at sc0000002:1545150..1556722- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000612 ID=TCONS_00000612|Name=TCONS_00000612|organism=Clytia hemisphaerica|type=transcript|length=11573bp|location=Sequence derived from alignment at sc0000002:1545150..1556722- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:1545150..1556722- >TCONS_00000612 ID=TCONS_00000612|Name=TCONS_00000612|organism=Clytia hemisphaerica|type=CDS|length=9828bp|location=Sequence derived from alignment at sc0000002:1545150..1556722- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000612 vs. Swiss-Prot (Human)
Match: CBPA4 (Carboxypeptidase A4 OS=Homo sapiens GN=CPA4 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 2.876e-39 Identity = 78/267 (29.21%), Postives = 130/267 (48.69%), Query Frame = 3
Query: 174 LLRVTPTNEQQLDFLTSLKTYKGDLKIQLWRHPDEVDRHVDVWISPKSIDKFKKLSGALNMTYEVLTKNI---FDEWDKEYSMNNIED-----FDM-VYQKYDEIVGELKRLASVYSDIMELQSIGKSYEKNDIYSVHISLNRSDSREIIYLNCGSHAREFLSVSSCKYVIRKILFDSKYDDKIKDLLHNFDIVMTPLLNPDGYIFAHXXXXXXXXXXXXXXXPTSDRTCYGVDLNRNFDHRWGGYGGSGDPCDNIYSGPRPFSEQE 947
+LR+ N ++ L+ L +LK+ W+ P +R VDV + S+ FK + + Y V +++ D D E N ++ F+ Y + I E+ +A+ + D+ IG S+E +Y + S + R ++LN G H+RE++S ++ + RKI+ D + D I +L DI + P+ NPDGY++ +SR+P S +C G D NRN++ + G G S +PC +Y GP SE E
Sbjct: 26 VLRINVRNGDEISKLSQL-VNSNNLKLNFWKSPSSFNRPVDVLVPSVSLQAFKSFLRSQGLEYAVTIEDLQALLDNEDDEMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQ--TQNRLWRKTRSRNPGS--SCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVE 287 HSP 2 Score: 58.151 bits (139), Expect = 2.876e-39 Identity = 36/111 (32.43%), Postives = 53/111 (47.75%), Query Frame = 2
Query: 1061 MDVHVFGQLWMSPWGYSSTTPKHAAIHEAMLKQIKANLFKEQNIVYEVGQSAVVLYQTSGDSIDWVYGRLGVVHSYGVELRPNLTVRRGFRYHSNFTKPTGEDLLVGIMTI 1393
+D+H + QL M P+GYS A + + + L Y+VG + +Y SG SIDW Y G+ ++ ELR T GF +N PT E+ +G+ TI
Sbjct: 305 IDLHSYSQLLMYPYGYSVKKAPDAEELDKVARLAAKALASVSGTEYQVGPTCTTVYPASGSSIDWAYDN-GIKFAFTFELRDTGTY--GFLLPANQIIPTAEETWLGLKTI 412 The following BLAST results are available for this feature:
BLAST of TCONS_00000612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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