TCONS_00000610 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000610
Unique Name	TCONS_00000610
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1846

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000002:1545150..1551937-

transcript sequence

>TCONS_00000610 ID=TCONS_00000610|Name=TCONS_00000610|organism=Clytia hemisphaerica|type=transcript|length=1846bp
CACGGATTTACTTAtagaaaaagttaattttttgacaaattttattggaa
tggaaagttgatttttgctaaatttattatagtgaaatttttttttcata
acaattCAGCAAGCAAAAACCGCTATTTGATTATAATttcttcaatcaaa
aattacagCATCTTTCTTGTTCACTGcagattattttgagacagacttta
tatCCCTTCTCTAGACCTTCTCTTAACTTTTATATAAGTAAATTTTTGCA
AAACACGTGACCTTGTCAACAGATCTATAATTATTTATTTCAAGGAAGGT
GGCGACCCGTCTTTCTTTTAAGAAGGACGATGAAACGGTTTTTGGTTTCG
GTGTTGTGTTTGGTACTTCTTATTCAAAATGTTGAATCACAACGCAAAAA
CAAAAGCATCAAAAAGGTAATGTTGCTGAGGGTTACTCCAACGAACGAAC
AGCAATTGGACTTTCTGACATCATTGAAGACATATAAAGGTGACTTGAAG
ATTCAACTTTGGAGACATCCAGACGAAGTTGATCGCCACGTCGATGTCTG
GATATCACCAAAATCAAttgacaaatttaaaaaactttctgGAGCTTTGA
ACATGACATATgaagttttgacaaaaaatattttcgatgaATGGGACAAA
GAATATTCTATGAATAATATCGAAGATTTTGATATGGTCTATCAAAAATA
TGACGAGATAGTTGGAGAATTGAAACGACTTGCATCTGTTTATTCAGACA
TTATGGAGTTACAAAGTATCGGAAAATCTTACGAGAAAAATGATATATAC
TCAGTTCATATTAGTTTAAATCGAAGTGACAGTCGTGAAATCATTTATTT
GAACTGTGGATCACACGCAAGAGAATTCTTATCCGTCTCTTCATGCAAAT
ATGTCATTCGAAAGATTCTGTTCGATTCTAAATATGAtgataaaatcaaa
gatttGTTGCATAATTTCGACATTGTGATGACACCGCTATTGAATCCAGA
TGGTTATATTTTTGCACACAATAAAAAACTCAAGCTGAACAGACTATGGC
GTAAATCACGTTCACCGACTTCTGATCGAACTTGTTATGGAGTTGATTTG
AACCGGAATTTCGATCATCGATGGGGAGGATACGGTGGTTCTGGTGATCC
ATGTGATAACATATACAGCGGGCCACGTCCTTTTTCCGAACAAGAAACGC
TGTCTTTAGCACGCTACCTATACAAATTACGACGTCGTCTGGTATCTTAC
ATGGACGTCCACGTTTNGCACGCTACCTGTACAAATTACGACGTCGTCTG
GTATCTTACATGGATGTCCACGTTTTTGGTCAACTCTGGATGAGTCCATG
GGGATATTCAAGTACAACACCAAAGCATGCTGCTATACATGAGGCCATGC
TGAAACAAATTAAAGCAAATTTATTCAAAGAGCAGAACATCGTTTACGAA
GTTGGACAGTCTGCAGTAGTATTATatCAAACAAGCGGCGACTCTATCGA
TTGGGTATACGGCCGTCTTGGTGTCGTTCACTCTTATGGCGTCGAATTAC
GCCCTAACCTGACTGTAAGGCGTGGTTTCCGATATCATTCCAACTTTACA
AAACCTACTGGAGAAGATCTTCTCGTAGGTATTATGACGATCTCAAATGA
ATTGTCAAGAGAGAGAAATGAGAGAATGGGTGCTATGCTATGATGAATAG
TTGGTatctttttctgaaagattttctaaaagattattttattttttgaa
tatttaacaaatgaaataaaaattttataccATAACTTGGACCTATCTTT
ATTCATGGCGTTTCGAAATTATTAGAGTATCGATATTTCATTGGGG

Run BLAST on NCBI

transcript from alignment at sc0000002:1545150..1551937-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000610 ID=TCONS_00000610|Name=TCONS_00000610|organism=Clytia hemisphaerica|type=transcript|length=6788bp|location=Sequence derived from alignment at sc0000002:1545150..1551937- (Clytia hemisphaerica)
CACGGATTTACTTATAGAAAAAGTTAATTTTTTGACAAATTTTATTGGAA
TGGAAAGTTGATTTTTGCTAAATTTATTATAGTGAAATTTTTTTTTCATA
ACAATTCAGCAAGCAAAAACCGCTATTTGATTATAATTTCTTCAATCAAA
AATTACAGCATCTTTCTTGTTCACTGCAGATTATTTTGAGACAGACTTTA
TATCCCTTCTCTAGACCTTCTCTTAACTTTTATATAAGTAAATTTTTGCA
AAACACGTGACCTTGTCAACAGATCTATAATTATTTATTTCAAGGAAGGT
GGCGACCCGTCTTTCTTTTAAGAAGGACGATGAAACGGTTTTTGGTTTCG
GTGTTGTGTTTGGTACTTCTTATTCAAAATGTTGAATCACAACGCAAAAA
CAAAAGCATCAAAAAGTAAGTTAATTTCTCTCATATTCTCAAAATAGGCT
GTTAAAACATACAGGGGGATGGACGAACCTCTTCAAGACAAAAAAATTAT
TGAAAATGTGTGGATACCCCCCCTGGAAAATGGCAAAACTTGCAAAAATA
CCCTAGGAAAGATTCTTTTCATACCTTAAAGTGAAGGTAGACGAACTGAA
ATCAGTCTTTTATCCCCTTGGAAAAATGAAAAAAAACCCTGGAAATTCTG
CTCGGATCACCCACTGGAAATCTTCGTCCACCCCCCCCCCCTGTATGGAT
AAAAAATGGAGTGGCCCAATACTACGGGTTATAAGACAGGGTGAAGAGTC
TACGTAGTAAAATTTTAAGTATGCTTTTCTCGAATTCGATCTTCAAGGAG
TGTCTAAGACTTTTCCTCAGAAATTCGTTCTACCCAAATTTGATAAATTT
GGAATCCAAATTTGGAATCATATTGCCTTAAAATAGTTTTCCGTCATTCA
GCAAGTTAACAAAGTTTCTATGACTTCGATCTTACCACAACTAAGGGGTT
GTTAGGACGAGAGAAAAAAACTTCGATGGGCTTTAAACGCACTGTAAGTG
TAAGTGGTACCGGAAATGTTTGAATATCAAAAGTTATTGTTTAGTTTGTT
TTGTTTATGGTTTGAATGACAGTTATGTAAACAAACAGTCAACACAAAAA
ATTCTTAACTTTGGTCGTCAACCCCATTCTAAAATAGAGTTCTGAAAATA
ACCTTTTTTATAAGCATCTCTGCCCGCATTCTTGACTGTATTTCTCTTCT
AATAATAAATACTTGCTTTGCCCTATCTACACTTTGTCAAACTCTCGATG
TTTTATAAACACACCTCTGCCTCGCTAATACAAAGAGGACATTGCAACAC
ACATAATGAAAAGTATATTGCAACAAAAGGGGCAACTAAGCTCTGTCTCT
GTTCTCAATAAAACCAATCCAAAATTGCAATCTAATATCGCACAACCGTC
TTTAAAAGCCAAATTCTTTAAAAGTAAATCAATCTATTCATGACATCCCA
TTCTCACAGACTCGGTAGGACTTTTTCAGCCAGTGGGGATAGAAATAGCA
GACTAAAACTCGATGGGGATTGATATTCCCATATTTTTTATGGCTGGGGA
TTTAAATTGCATTGCTTTCAAGTCAGAAAAATAGTGGGGATGGGGAAAAC
AGCATGATATTATGTAGTGAGGATTGGTTTGTTTGATTATTTTCAGTGGG
GACAAAAATTGGAGTACAATTTTCACTGGGGACGTTATTTTGGCCATTTT
TTCCAGTGGGAAGGATTCCCAGTGGATCTGTGAGAAGGGGGTGTTTTATG
TCAGTGTGGAGGAGGGGACTTTTAAATCTCATGAAACTGATAAAACGACT
TGTTGTTGGGAAAAAAGTTTGGATGTTTTGCATCTATGAAGGCTTACTAT
ACCTTTCTTAGGGTAATGTTGCTGAGGGTTACTCCAACGAACGAACAGCA
ATTGGACTTTCTGACATCATTGAAGACATATAAAGGTGACTTGAAGGTAC
GAGGTTAGATCTCCACATTCACTGATTGAAGCCTTCCCCCAGCGGACCCA
AAATTCACGCCATTACGTCAATTCTTTTCAAATTTCACGATGTCACGCCT
GTGAAATTCGATATTCACGATAAAGCCATTTTTTCTCGAAAATCACGCCA
CGGAAAACCCTGGGAGTTGCTAAATTCAAGCCACTCAAGCTCACGACTTG
ATTTTCATCAAAGCCAATCAAAAAATTAAAAGCGATGAGTCGTTTTTAAA
TAGGAAGCCCTTCGATACTTTCTGTAGGTCAATACAAAGACAAGTATTTC
CACAAAATTGGGGTGTCACTATTCTTTAGACTTATCCACGGCATCAATCA
TAGAAAACAAAAAGCCTTAGCCCGGGGGGGGGGTACTTAGGCAAAATTGG
TGCCGGGTATGTGCGAGCCATAAGGGTACCTTTTCTCATTCCTCAAAAGT
CTGAAAGGGTCCCAAAATCACGAAAATCAAAAATTTCTCTCTCAAAGGGT
CACGATTTCCAAAAATTTTGACCAAAATTTGCGTGAAAATCAAACCAAAA
TTTAGGAAAAAGTCTCTCAAAGGGTCCCAAAATCACCAAAATTTTGTCTC
TCCAAGGGTCGATTTTCGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCGGGAGCC
TTAGCCTCACCATATGAATTAATTCGATAAATTAGTCATGAGAAAAGGCA
TTTCTAGCGTGACTGTATTGTTGTTAACCACACTCTGAAGTTCTTAACTT
CTGTCAACACAGATTCAACTTTGGAGACATCCAGACGAAGTTGATCGCCA
CGTCGATGTCTGGATATCACCAAAATCAATTGACAAATTTAAAAAACTTT
CTGGAGCTTTGAACATGACATATGAAGTTTTGACAAAAAATATTTTCGAT
GAATGGGACAAAGAATATTCTATGAATAATATCGAAGATTTTGATATGGT
CTATCAAAAATATGACGAGGTATGTAATTATCACACCCGAAATATGTTTG
CAATCTAATTATAATTAGATGTAAAGCATGCAATCTTTAACTTCTTCACT
ACTGTTGGAAAGATTTTTCAATGCAATTTTCTCGGCTCGGCTTAAGCAAA
ATAGGTTATGTTTTGGTCTGTTGGAAAGCTCTTTTCAGGATCTATATTTT
CAGTATGCCACATTTTGAAGCAGGTCCTCAATCAAAATCACCGGAAGCCA
AAAGAATCGTTTATAAATGAAGGAATTTCAGTTTGGCAGTACTCATGAAG
TAGAGAGCTGCCAGTGTATTATTACTATATTCAGAAACTCCACTGTGCCA
GGAATACCTCCTTTTACTCTTTTATTAAAGTAATAATACCCAATTCCCCT
CACATTACATGAGTTGACTTGGGCGAAGGTATATTTACTTGCTAAGTGGA
TGTTAGCACTGAATAGGTATCGAAGCCCGACCTGCTGGACAGAAGTTAAA
GCGGATAATCTCAACACCACACGTATCCATGAGAACTAGTGTATACATTA
TCAAGGTTTTCAGAAAAAAACAACTCAGATTTTGTCTCTTTGATTTCTGC
TAACAGGGTCATTCGTCTTAAACTCTTGTTTAGATAGTTGGAGAATTGAA
ACGACTTGCATCTGTTTATTCAGACATTATGGAGTTACAAAGTATCGGAA
AATCTTACGAGAAAAATGATATATACTCAGTTCATGTAAGTTTATTTATT
TTTGTTTATCTAACGTCTATCATTCTTTAACTATTCATGCATCCACAGCT
GACATAAAACAGGCCCGAGGCTACATACGAAAAACAGGTGACGGGTATGT
GCAAGCCATAAGGGTACCCTTATTCATAACACCTTTATGTCATAGACCCA
GACCCCCTTTCTACAATCAGATTCCTATGCTTTATCCTCACAGAGAAAGC
TTTTGGGTTATTATCAAGTATAGGTTCATTTAAAATGTTGAAGTTTTTCT
GTTTCTCAGATTAGTTTAAATCGAAGTGACAGTCGTGAAATCATTTATTT
GAACTGTGGATCACACGCAAGAGAATTCTTATCCGTCTCTTCATGCAAAT
ATGTCATTCGAAAGGTAAGACACTTTCATGAGCTAAATACATCATTTATC
CAACTAACCTACTAGCTTTCAAAGAAGTTATCATTCAAAACCGCGCTGTC
GATCGCAGAATTTTCTCCTTGATTGAATCTGAAAATAACCGCAATGTGAA
ACATGGTTCTCTCTCGTCTGTCTTTTTTAGATTCTGTTCGATTCTAAATA
TGATGATAAAATCAAAGATTTGTTGCATAATTTCGACATTGTGATGACAC
CGCTATTGAATCCAGATGGTTATATTTTTGCACACAATAAAAAACTCAAG
GTAGGTGCATAAGTTAATAAAAACGCCGTTAACGATGAGGGAACTTTTCT
AATCTTTTCAACTTTGAGAAACTTTTATTCTCATGAAAGATTTCACTTCA
ATAGTCCCTTCGTAAAAATATTAGTTATTTTTCCTTTTCTCGAGGTCAGA
TTTCTTATCTCCACATGCAGTAGAGTCTCCATAACTCGACCACGCACGGG
GAAAACAAATTTGTTCGAGAAATTTCGAGTTATGGAGTAAGGTTTATAAG
ACATTGTTAACTCAAAGATCGAGAAAACTTGTTCGAGTTAAAAAGACATT
CAAGTTATAGAGGTTCGAATTAAAGATACATTGTGGTTCGGGGCTCTTAT
ATTAATAACCAACCATACGCGATAAAGGATAATTTCTTTACAGCTGAACA
GACTATGGCGTAAATCACGTTCACCGACTTCTGATCGAACTTGTTATGGA
GTTGATTTGAACCGGAATTTCGATCATCGATGGGGAGGTGAGATAAATCA
ATGCTTTTGTAAATCGAACGTTGAAGGGTGTTGTGATGTTGAGAGTATTG
CATATTTTTACATGTTATTTTATGCTAAATACCCAAACCTGATTATAAGC
ATAAAGTTGGCGAATATTTTAGTCAAATTTTTACGAAATTGGTGTACCAG
TCGATATTACACCCCCTTCTCACAGACCCAGTAGGATTTTCTCAGCCAGT
GGGGATAAAAATGACGGACTGTAACTGGATGGGGATTTATATTCCCATAT
TTTTTATGACTGGGGATTCAAATTCTTTTGTTTTCAAGTCAGAAAAATTC
AGTGGAGATAAGAAACATAGCATCATAATATTTTGCAATGAGGGTTGGTT
TATTTTATTATTTTCCGTGGGGGAAAAATTGAAGTATAGTTTTCCACCGG
GACGATATTTTGGCCAAATTTTTCTAGTGGGAAAGGGTCCCAGTGGGTCT
GTGAGAAGGGGGTGTGATATTTAAAATAATCAACCTTGAATGTTGATCTA
ATTTTCACTCTAAGAAATTCACATTTAGTTTCATAAACCTTTCAAAAATA
ATTTCTACTTTCTAAGTGTTTCTACTGCAGGATACGGTGGTTCTGGTGAT
CCATGTGATAACATATACAGCGGGCCACGTCCTTTTTCCGAACAAGAAAC
GCTGTCTTTAGCACGCTACCTATACAAATTACGACGTCGTCTGGTATCTT
ACATGGACGTCCACGTTTNGCACGCTACCTGTACAAATTACGACGTCGTC
TGGTATCTTACATGGATGTCCACGTTTTTGGTCAACTCTGGATGAGTCCA
TGGGGATATTCAAGTACAACACCAAAGCATGCTGCTATACATGAGGCCAT
GCTGAAACAAATTAAAGCAAATTTATTCAAAGAGCAGAACATCGTTTACG
AAGTTGGACAGTCTGCAGTAGTATTATGTAAGCATTTTTAAACTTTGTAT
AAACCTAAAGAGGTACATGGTGTGGTTTTATCAGCCCTTTTCTGGCGGCG
TATGAAAAATTGTGACGGTATTTTGGTGGCTAACTTGCAATGCAAAGATT
TCAGCAATTATTTCTGTCGGTGTTGACGGATATTCAAAATATATGTAGTG
ACACCACCCCTCCTGAACGCCCCACACTAGCTGTAGACAAATAAAAATAC
CCTGTGTCGGCTTTCGAGATTCTCGTTTAAGTCTGGTTTAAGTCAAAAAT
TAATTTAAAAAGTTTACATTAACGTGATGTAGAAGACTGTTCATCTAACG
TTTCCAGATCATCTAAAAAGAACGACAAATAACATTCAAAAAGCGACTAA
AAGAACCCTAACCCTAACCCTAACCCTAACTATCAAAAACGACATAATTT
GGATATTAAAGACGTAAAAAATTTGGATTTGAATTTTGGTTCGGGAAATA
AATCGGGTTAAAGTTTTGGTCGGGAATAAAAAAACCGGATACAAGTTTTG
GTCGAGTGATAAAATGTCGAGGGAAAATTAGGTAGCCTCTTTTTATACTT
ATGACAGAAATCTGTGTGAGACAGAAAACTATTCAAGTAAATATAATTCC
TAGCATTTTTATTTTAGATCAAACAAGCGGCGACTCTATCGATTGGGTAT
ACGGCCGTCTTGGTGTCGTTCACTCTTATGGCGTCGAATTACGCCCTAAC
CTGACTGTAAGGCGTGGTTTCCGATATCATTCCAACTTTACAAAACCTAC
TGGAGAAGATCTTCTCGTAGGTATTATGACGATCTCAAATGAATTGTCAA
GAGAGAGAAATGAGAGAATGGGTGCTATGCTATGATGAATAGTTGGTATC
TTTTTCTGAAAGATTTTCTAAAAGATTATTTTATTTTTTGAATATTTAAC
AAATGAAATAAAAATTTTATACCATAACTTGGACCTATCTTTATTCATGG
CGTTTCGAAATTATTAGAGTATCGATATTTCATTGGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000358	XLOC_000358	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000002	supercontig	sc0000002:1545150..1551937 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.138941	0.122693	0	2.27957	1.61724	5.82015	10.2611	6.73393	7.09625	8.15972	9.30115	15.6363	16.9717	3.58168	3.78775	6.37367	8.97885	26.7547	29.8922	7.62258	7.93694	7.4655	9.94336	5.75886	6.86153	1.24736	4.65946	93.1422	99.7552

Blast

[Close]

BLAST of TCONS_00000610 vs. Swiss-Prot (Human)
Match: CBPA4 (Carboxypeptidase A4 OS=Homo sapiens GN=CPA4 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.822e-39
Identity = 78/267 (29.21%), Postives = 130/267 (48.69%), Query Frame = 3

Query:  423 LLRVTPTNEQQLDFLTSLKTYKGDLKIQLWRHPDEVDRHVDVWISPKSIDKFKKLSGALNMTYEVLTKNI---FDEWDKEYSMNNIED-----FDM-VYQKYDEIVGELKRLASVYSDIMELQSIGKSYEKNDIYSVHISLNRSDSREIIYLNCGSHAREFLSVSSCKYVIRKILFDSKYDDKIKDLLHNFDIVMTPLLNPDGYIFAHXXXXXXXXXXXXXXXPTSDRTCYGVDLNRNFDHRWGGYGGSGDPCDNIYSGPRPFSEQE 1196
            +LR+   N  ++  L+ L     +LK+  W+ P   +R VDV +   S+  FK    +  + Y V  +++    D  D E   N  ++     F+   Y   + I  E+  +A+ + D+     IG S+E   +Y +  S  +   R  ++LN G H+RE++S ++  +  RKI+ D + D  I  +L   DI + P+ NPDGY++             +SR+P S  +C G D NRN++  + G G S +PC  +Y GP   SE E
Sbjct:   26 VLRINVRNGDEISKLSQLVN-SNNLKLNFWKSPSSFNRPVDVLVPSVSLQAFKSFLRSQGLEYAVTIEDLQALLDNEDDEMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQ--TQNRLWRKTRSRNPGS--SCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVE 287

HSP 2 Score: 58.151 bits (139), Expect = 1.822e-39
Identity = 36/111 (32.43%), Postives = 53/111 (47.75%), Query Frame = 2

Query: 1310 MDVHVFGQLWMSPWGYSSTTPKHAAIHEAMLKQIKANLFKEQNIVYEVGQSAVVLYQTSGDSIDWVYGRLGVVHSYGVELRPNLTVRRGFRYHSNFTKPTGEDLLVGIMTI 1642
            +D+H + QL M P+GYS      A   + + +     L       Y+VG +   +Y  SG SIDW Y   G+  ++  ELR   T   GF   +N   PT E+  +G+ TI
Sbjct:  305 IDLHSYSQLLMYPYGYSVKKAPDAEELDKVARLAAKALASVSGTEYQVGPTCTTVYPASGSSIDWAYDN-GIKFAFTFELRDTGTY--GFLLPANQIIPTAEETWLGLKTI 412

The following BLAST results are available for this feature:

BLAST of TCONS_00000610 vs. Swiss-Prot (Human)

BLAST of TCONS_00000610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CBPA4	1.822e-39	29.21	Carboxypeptidase A4 OS=Homo sapiens GN=CPA4 PE=1 S...	[more]

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TCONS_00000610 (transcript) - C. hemisphaerica