TCONS_00000608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000608
Unique NameTCONS_00000608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000608 ID=TCONS_00000608|Name=TCONS_00000608|organism=Clytia hemisphaerica|type=transcript|length=1574bp
TTTTAATGAACGGTTTGAATACATTGAacattgaatttttgttttatttt
cacagAAGTAAACATGTAAAACATTGAGCAGAATAAACCACCACTGAAGA
TTGACAGAAAATGGGTATGCAAAAGTTATTGGTCTTTGTTATCATTCTGT
TTACCTTTCTCAATAACCAAACATCCGCCGCTCCCGTTAATCACCAACAA
CCATCAACTGCTAGTACTCAAACAACTGAAGGCTTTCTAGTCATCAATAT
TCCAGAGTATATGCGCAAAATCACGACAACTCCATTCCCGTACAATACAC
CGACAACACAAGAAACGACAGTTGTTTCAATCCTGTTAATACTTGGTGCT
GTAGCGGCTTTAGTCATGATTTCACAGTTCACATCACTTTTCaaaacGGT
GAAAAATGCGTTGTTCTAAATCAAATTGTAAATACTGGAAAATGCAAGAA
AATTGCAGTGTATCACTAAACACTGAAAAAGATGTTTTATATTATTCTCA
ATTTAtacatatatatatattatttgTGTTGTAAATATTATTGTATAAAT
TcataagtttttcaaattttataataAGTAAAGTAAAGTTCGAAAAGCTT
TttcactctctaattcgatatccAGAGGGTATTTTTAGGCCTTATTGACG
GAATTTTAAGTTAAACCTTGATTTTTTAGTGAAGTTATagacaagaaaaa
aatattgaatattctTTTCCGAAAAACTTAGTTTTTTACGAAGACCTTTG
ATTTTTCCCTAATCGCACCCAAGTGAATGTGATCAAATCTCTTAGATTCT
ACTGGTAGACAACAAAAATTCAACGAAATCGAACCGATTGAAAAGAAGTT
AGCAAGGACCGTTAAGAAGGAGGGGGTTGTGAACGCGGttctgatttccg
aaataccgataAGGACTTTGTAGTGAGTTTTCTTGAAATTAAgggtaaaa
ttattttaatttcaatgctgatattttttttgagCCATTTTGCCGAAAAT
TAAATTTAAGAATTGATACTCCTCGTTACCGAGATTTTAAtgtaaaagta
attatttttgcCGATACCAAACTAATTTTTGGATCACCGAAAAAAATTTG
taagattttcaaaatcccAAATTAAAAAACAGGTTTCTGCAATACCGAAA
TCTCGTATAACCCTACCCCCCCCCCATTCGCAGAAAGGGCTAACGTCACC
ATGATCAACATGATAATAAAACGCGGTATATAAGATTCTATTGAGTGGAT
TCTCCAAAACTCAAACACGCATAGGAAACataaatttgttttaattatgg
aaatttcgagttatgagaTTGGTTCATAATCTAATAAGGCATTGTGAAGG
ACTGAAGGGcagaaaactttttcgagttaacgAGACCATCCGAGTTGtaa
aggttcgagttatgaagactccaCTATATTAATACTggacacgttttttt
tataagaatggtgtttttccaattcatcatgaatattctcaactttttgg
tgaaaaacatcttgaaaaagaatttgtaagattttcaaaatcccAAATTA
AAAAACAGGTTTCTGCAATACCGA
Run BLAST on NCBI

transcript from alignment at sc0000002:1456666..1462606-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000608 ID=TCONS_00000608|Name=TCONS_00000608|organism=Clytia hemisphaerica|type=transcript|length=5941bp|location=Sequence derived from alignment at sc0000002:1456666..1462606- (Clytia hemisphaerica)
TTTTAATGAACGGTTTGAATACATTGAACATTGAATTTTTGTTTTATTTT
CACAGAAGTAAACATGTAAAACATTGAGCAGAATAAACCACCACTGAAGA
TTGACAGAAAATGGGTAAGTGTGGTAAGGTTCTTTTTTTTTTCGTTTTAT
TGATTTCCAAATTTCCGCCCTGTTAGAATATTTAAAGAAGAATAAACGAT
CTAAAAAATACCACCTGTCTCAATCTCAATGCCCAAAATAAGAACTTACA
GGAATTTTCCAATTCAAAGATCAGTATGTCAGTGGGAGGTTTCCTTAAGG
GTTAAAAAATATTCTCCCCTAATCCTTGCCACTATAGAAAAAATACAAGT
ATGTTACCTTGTCATGTAAATTCCAAAGATCTGCAAGGGAATACTTTTAC
GTCTGTTCGGCAGAATAGAGATTGATGTTAGAAGGATAGAATTATTCGGA
GATTCAACCAAGCTGAAATAATGACGATTAGATACAGTTATGATATGTGA
TTTTATAGCGCTTCCACGCCAATTTCCAATGAAATGAGATGCAGTTGCTG
CGTAAAAACAATTGTTTTTAAAAAACTACACTACATATTAAATTAACACT
AGGTAAACACAAAAAGATTTATATATACAGTTAGAATTTCCTGGGTTGTT
ACCCGTACTGGAATTTTCTACTTATACTTTTTAATTTTTTCCCTACATAT
ATAAAATGTTCACAATCACAGATTCTGCTCACAAAATTTCAAACTCTCAA
CAAGGTTATCTAGGATAACCTTTCGCGACTGCGAGCCTCGTGCGAGTATT
GTTGCGCGAAGAAGTAAAAAATTTTTTGTTCTAATCGCACGATGAGTTAT
TTTCTCTTCTTTGGCTCGCCTTCAAAGACAGCAATTAATCGTTAATTGCA
TCCTGTAGAGAGTAATTAATCGTTAATCACACTCTTCAATGACGCGCCAA
TGTTTACAAAATTGAGAAGTGAGAAGTGACGAAAAATCAGTCCATACGTC
ACTTGTAATCAATTAGCTGTTGGGTTCGTTAAAAACATTACAATGGTGCA
TATCATGAATAGGAAAGTTTCACTAGGAATGAGGAAGTTTAGCCATCCCA
CGGTACACTTCCATCATTCAATTTAAGCTAAGCTATTGTATTATTTTCTC
ATTTATAGGTATGCAAAAGTTATTGGTCTTTGTTATCATTCTGTTTACCT
TTCTCAATAACCAAACATCCGCCGCTCCCGTTAATCACCAACAACCATCA
ACTGCTAGTACTCAAACAACTGAAGGCTTTCTAGTCATCAATATTCCAGA
GTATATGCGCAAAATCACGACAACTCCATTCCCGTACAATACACCGACAA
CACAAGAAACGACAGTTGTTTCAATCCTGTTAATACTTGGTGCTGTAGCG
GCTTTAGTCATGATTTCACAGTTCACATCACTTTTCGTAAGTTTTCATCT
TTTACAGACACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGGCAGG
GGGTGCAGGGTGTGCAGTGCACCACCCAGAAAGACCTGAGAGGGGCGCCA
AAAAAGCTTTTCAAGGGGGCGCCAAAGTTCTTTTTGATGTTTGGTTGGGC
GATTTTGCGCTCTTCGACACGTTTTTAGCGCCTTCTATAAGTGCAATGTA
AATTTTTTTTCGCCTGCGGCGCTTCGTTTTATTTTACGATTTTTTTTAAA
ACTACTATCAACATTTAATTACAAAAAGTCAAAGCAAGAGAAGTGTTGTG
TATCCACCAGGGGTTAAAGAGGATGCTCACCCCCAAAATGAGAGATTGAT
CGGAACTGCTCTCTGTGGTTTTTGTGGTCTTATGCGGACTAACTTTCTCC
TTTTTAGAATATCTTATAAGCTGTTTGACCTTTCTTACACCAAATTTTTT
TGCCTGCGGCGCCAGAAATACAAAGAACCCTTATTCTTGCCAACTTTCGA
TTTTTTGGGGCCTCTTTCAGCCATTGATCTTTATTGGAGTTCAAGTAAGA
CCAGGAAATAACAAGGAAATAGATATCAAATTATCATTACCACTTACACC
ACCTTCCTATAAATAAAAGTTTGTTAACTCAGAGATTTCGGGCGTTACTT
TCAACCAGTCACTGCTCTTACAGTTTAATAGTTTCACTTAATGGTATAGG
GCGTAAATAAGGACAAAAATACCAGGGGCGCCAATTTCATAGTTTGCACC
ACCAAGAAAATTAAGCCAGGCCGCTACTGCTGGTTATGCATTTAACACAT
ATAATTGATATCTACGTGAGCGTGACCATTAAACAATCATTCAGAATAAA
AATAGTGACGATCTATTAAAATTAGTCGTTTGTTTCTTATAAAAAAACGT
TTAGAAACCAAAATGCTCTTTAAAATATTCTTTCATATTCAAGACTTCGT
GGGCAAAAAAACATATCTCATCAAAAAATTCAGTAATTTGACTAAGAACA
TTGATGTATGCTTATTAATAGTGATACTTATAGATAAACATGCGTTTTTG
AGCCGAAAAATTCTTCTTTTACAAAAATCTGCTTACCAACTTTCATGCAA
AAAGTCAGAAAAAAACAATGATCCAATATTTCAGTAAGTCCTAAAAACCC
TTTTTTGCCGTTTTTTAGCTGAAATTTACCCCAAAAATCTCTTGCCAAAA
ATCTAGCTCCGTCACATTCGCGGTTTATAGTTAAGCATCTTTGTGCAAAA
AATCATAAAGAATGAAAGAGCCAATCTCTAGAAAAGCTAATACCTAAGTA
ATGATAAAAAAATATCAAATTTGGCCAGTTTTTCTATAAAAACACGTCAA
GCAACCAAAATTTCATGTCTGAACACACATATGCTTGAGCCATCTTTTAC
CCATGATGGTACCCTACTTTCATGCAAAAAAATCAGAAAAAATTAATGAT
CCAATTTTTCACAAATCCAAAAAAAAACTGCTTTTTTAGCCGTTTTTTGG
CCCATATTTGCCCCCAAATTTTTTTTCTCGAAAATCAGGCGCCGTCACAT
TCGAGGGTTTATAGTTATGCATCTTTGTGCAAAAAATCAGAAAAAACTAA
TGAGCCAATATCGAGAAAAGCTAGTAACTAACGAACTAACGAACGGACGA
ACATACATCGGTTAATTTATAGGACCTCCGCCGGGGTAGGTCCAAAAACT
AACAGTAAATTTAATAAGTTCCTCGTTCCTACCTTTCCAACGATACCAAA
CTTTTTAAGATTGAAGCATTGGTTGAGAAATAACAATCAAAGCTAAACTT
AGTGCTCACTTATCGTTGATAGACTGTAAAACCGTTATTATAGCGAACGG
TAACGCAGTTTATAAAATTCGTTATTTTGTCGCACAGAAAAATTTTGTTG
AGGACACTTTGGTTGATAAGTGAAATAGCAAAATTATCAGTCTCTGTCTA
AAATGAAATCACTCATGGTATTCGTTATATCTCCTTTGATCCCTGGTGGC
TCCGTCCGTCAAAGGTTTCTTTTTACTTATACGTTTCTCCCAGGAAAGAA
AAAAAATATCCACTCCAATTTCTGATTCTGCACATGGTGTACAAAGGGCT
GTAGCAATGTGTACCTCATGTATGACGTAGCTGAATTATGGAAATTTAGG
GACATGCTTAAAATATTAAGAACTTCTTTTGTGTACACGGTCATCTTTTC
TTTTCTTAGAAAACGGTGAAAAATGCGTTGTTCTAAATCAAATTGTAAAT
ACTGGAAAATGCAAGAAAATTGCAGTGTATCACTAAACACTGAAAAAGAT
GTTTTATATTATTCTCAATTTATACATATATATATATTATTTGTGTTGTA
AATATTATTGTATAAATTCATAAGTTTTTCAAATTTTATAATAAGTAAAG
TAAAGTTCGAAAAGCTTTTTCACTCTCTAATTCGATATCCAGAGGGTATT
TTTAGGCCTTATTGACGGAATTTTAAGTTAAACCTTGATTTTTTAGTGAA
GTTATAGACAAGAAAAAAATATTGAATATTCTTTTCCGAAAAACTTAGTT
TTTTACGAAGACCTTTGATTTTTCCCTAATCGCACCCAAGTGAATGTGAT
CAAATCTCTTAGATTCTACTGGTAGACAACAAAAATTCAACGAAATCGAA
CCGATTGAAAAGAAGTTAGCAAGGACCGTTAAGAAGGAGGGGGTTGTGAA
CGCGGTTCTGATTTCCGAAATACCGATAAGGACTTTGTAGTGAGTTTTCT
TGAAATTAAGGGTAAAATTATTTTAATTTCAATGCTGATATTTTTTTTGA
GCCATTTTGCCGAAAATTAAATTTAAGAATTGATACTCCTCGTTACCGAG
ATTTTAATGTAAAAGTAATTATTTTTGCCGATACCAAACTAATTTTTGGA
TCACCGAAAAAAATTTGTAAGATTTTCAAAATCCCAAATTAAAAAACAGG
TTTCTGCAATACCGAAATCTCGTATAACCCTACCCCCCCCCCATTCGCAG
AAAGGGCTAACGTCACCATGATCAACATGATAATAAAACGCGGTATATAA
GATTCTATTGAGTGGATTCTCCAAAACTCAAACACGCATAGGAAACATAA
ATTTGTTTTAATTATGGAAATTTCGAGTTATGAGATTGGTTCATAATCTA
ATAAGGCATTGTGAAGGACTGAAGGGCAGAAAACTTTTTCGAGTTAACGA
GACCATCCGAGTTGTAAAGGTTCGAGTTATGAAGACTCCACTATATTAAT
ACTGGACACGTTTTTTTTATAAGAATGGTGTTTTTCCAATTCATCATGAA
TATTCTCAACTTTTTGGTGAAAAACATCTTGAAAAAGAATTTGTAAGATT
TTCAAAATCCCAAATTAAAAAACAGGTTTCTGCAATACCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000356XLOC_000356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000608-exon-sc0000002-1575043694:1462493..1462606TCONS_00000608-exon-sc0000002-1575043694:1462493..1462606Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1575043694:1461171..1461448TCONS_00000608-exon-sc0000002-1575043694:1461171..1461448Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1575043694:1456666..1457847TCONS_00000608-exon-sc0000002-1575043694:1456666..1457847Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1510915933:1462493..1462606TCONS_00000608-exon-sc0000002-1510915933:1462493..1462606Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1510915933:1461171..1461448TCONS_00000608-exon-sc0000002-1510915933:1461171..1461448Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1510915933:1456666..1457847TCONS_00000608-exon-sc0000002-1510915933:1456666..1457847Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1491911889:1462493..1462606TCONS_00000608-exon-sc0000002-1491911889:1462493..1462606Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1491911889:1461171..1461448TCONS_00000608-exon-sc0000002-1491911889:1461171..1461448Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1491911889:1456666..1457847TCONS_00000608-exon-sc0000002-1491911889:1456666..1457847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1456666..1462606 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.386449	0.329489	0.323712	0.54703	5.74337	4.12595	3.17448	2.15636	2.27357	1.51924	4.28912	1.43672	4.77479	4.49146	1.51903	1.64717	6.45689	5.19961	10.5503	11.0338	26.0792	22.578	12.6355	14.4129	10.1834	9.83526	15.8557	12.9676	0.115392	0.176349
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top