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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000608 ID=TCONS_00000608|Name=TCONS_00000608|organism=Clytia hemisphaerica|type=transcript|length=1574bp TTTTAATGAACGGTTTGAATACATTGAacattgaatttttgttttatttt cacagAAGTAAACATGTAAAACATTGAGCAGAATAAACCACCACTGAAGA TTGACAGAAAATGGGTATGCAAAAGTTATTGGTCTTTGTTATCATTCTGT TTACCTTTCTCAATAACCAAACATCCGCCGCTCCCGTTAATCACCAACAA CCATCAACTGCTAGTACTCAAACAACTGAAGGCTTTCTAGTCATCAATAT TCCAGAGTATATGCGCAAAATCACGACAACTCCATTCCCGTACAATACAC CGACAACACAAGAAACGACAGTTGTTTCAATCCTGTTAATACTTGGTGCT GTAGCGGCTTTAGTCATGATTTCACAGTTCACATCACTTTTCaaaacGGT GAAAAATGCGTTGTTCTAAATCAAATTGTAAATACTGGAAAATGCAAGAA AATTGCAGTGTATCACTAAACACTGAAAAAGATGTTTTATATTATTCTCA ATTTAtacatatatatatattatttgTGTTGTAAATATTATTGTATAAAT TcataagtttttcaaattttataataAGTAAAGTAAAGTTCGAAAAGCTT TttcactctctaattcgatatccAGAGGGTATTTTTAGGCCTTATTGACG GAATTTTAAGTTAAACCTTGATTTTTTAGTGAAGTTATagacaagaaaaa aatattgaatattctTTTCCGAAAAACTTAGTTTTTTACGAAGACCTTTG ATTTTTCCCTAATCGCACCCAAGTGAATGTGATCAAATCTCTTAGATTCT ACTGGTAGACAACAAAAATTCAACGAAATCGAACCGATTGAAAAGAAGTT AGCAAGGACCGTTAAGAAGGAGGGGGTTGTGAACGCGGttctgatttccg aaataccgataAGGACTTTGTAGTGAGTTTTCTTGAAATTAAgggtaaaa ttattttaatttcaatgctgatattttttttgagCCATTTTGCCGAAAAT TAAATTTAAGAATTGATACTCCTCGTTACCGAGATTTTAAtgtaaaagta attatttttgcCGATACCAAACTAATTTTTGGATCACCGAAAAAAATTTG taagattttcaaaatcccAAATTAAAAAACAGGTTTCTGCAATACCGAAA TCTCGTATAACCCTACCCCCCCCCCATTCGCAGAAAGGGCTAACGTCACC ATGATCAACATGATAATAAAACGCGGTATATAAGATTCTATTGAGTGGAT TCTCCAAAACTCAAACACGCATAGGAAACataaatttgttttaattatgg aaatttcgagttatgagaTTGGTTCATAATCTAATAAGGCATTGTGAAGG ACTGAAGGGcagaaaactttttcgagttaacgAGACCATCCGAGTTGtaa aggttcgagttatgaagactccaCTATATTAATACTggacacgttttttt tataagaatggtgtttttccaattcatcatgaatattctcaactttttgg tgaaaaacatcttgaaaaagaatttgtaagattttcaaaatcccAAATTA AAAAACAGGTTTCTGCAATACCGA Run BLAST on NCBI transcript from alignment at sc0000002:1456666..1462606- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000608 ID=TCONS_00000608|Name=TCONS_00000608|organism=Clytia hemisphaerica|type=transcript|length=5941bp|location=Sequence derived from alignment at sc0000002:1456666..1462606- (Clytia hemisphaerica) TTTTAATGAACGGTTTGAATACATTGAACATTGAATTTTTGTTTTATTTT
CACAGAAGTAAACATGTAAAACATTGAGCAGAATAAACCACCACTGAAGA
TTGACAGAAAATGGGTAAGTGTGGTAAGGTTCTTTTTTTTTTCGTTTTAT
TGATTTCCAAATTTCCGCCCTGTTAGAATATTTAAAGAAGAATAAACGAT
CTAAAAAATACCACCTGTCTCAATCTCAATGCCCAAAATAAGAACTTACA
GGAATTTTCCAATTCAAAGATCAGTATGTCAGTGGGAGGTTTCCTTAAGG
GTTAAAAAATATTCTCCCCTAATCCTTGCCACTATAGAAAAAATACAAGT
ATGTTACCTTGTCATGTAAATTCCAAAGATCTGCAAGGGAATACTTTTAC
GTCTGTTCGGCAGAATAGAGATTGATGTTAGAAGGATAGAATTATTCGGA
GATTCAACCAAGCTGAAATAATGACGATTAGATACAGTTATGATATGTGA
TTTTATAGCGCTTCCACGCCAATTTCCAATGAAATGAGATGCAGTTGCTG
CGTAAAAACAATTGTTTTTAAAAAACTACACTACATATTAAATTAACACT
AGGTAAACACAAAAAGATTTATATATACAGTTAGAATTTCCTGGGTTGTT
ACCCGTACTGGAATTTTCTACTTATACTTTTTAATTTTTTCCCTACATAT
ATAAAATGTTCACAATCACAGATTCTGCTCACAAAATTTCAAACTCTCAA
CAAGGTTATCTAGGATAACCTTTCGCGACTGCGAGCCTCGTGCGAGTATT
GTTGCGCGAAGAAGTAAAAAATTTTTTGTTCTAATCGCACGATGAGTTAT
TTTCTCTTCTTTGGCTCGCCTTCAAAGACAGCAATTAATCGTTAATTGCA
TCCTGTAGAGAGTAATTAATCGTTAATCACACTCTTCAATGACGCGCCAA
TGTTTACAAAATTGAGAAGTGAGAAGTGACGAAAAATCAGTCCATACGTC
ACTTGTAATCAATTAGCTGTTGGGTTCGTTAAAAACATTACAATGGTGCA
TATCATGAATAGGAAAGTTTCACTAGGAATGAGGAAGTTTAGCCATCCCA
CGGTACACTTCCATCATTCAATTTAAGCTAAGCTATTGTATTATTTTCTC
ATTTATAGGTATGCAAAAGTTATTGGTCTTTGTTATCATTCTGTTTACCT
TTCTCAATAACCAAACATCCGCCGCTCCCGTTAATCACCAACAACCATCA
ACTGCTAGTACTCAAACAACTGAAGGCTTTCTAGTCATCAATATTCCAGA
GTATATGCGCAAAATCACGACAACTCCATTCCCGTACAATACACCGACAA
CACAAGAAACGACAGTTGTTTCAATCCTGTTAATACTTGGTGCTGTAGCG
GCTTTAGTCATGATTTCACAGTTCACATCACTTTTCGTAAGTTTTCATCT
TTTACAGACACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGGCAGG
GGGTGCAGGGTGTGCAGTGCACCACCCAGAAAGACCTGAGAGGGGCGCCA
AAAAAGCTTTTCAAGGGGGCGCCAAAGTTCTTTTTGATGTTTGGTTGGGC
GATTTTGCGCTCTTCGACACGTTTTTAGCGCCTTCTATAAGTGCAATGTA
AATTTTTTTTCGCCTGCGGCGCTTCGTTTTATTTTACGATTTTTTTTAAA
ACTACTATCAACATTTAATTACAAAAAGTCAAAGCAAGAGAAGTGTTGTG
TATCCACCAGGGGTTAAAGAGGATGCTCACCCCCAAAATGAGAGATTGAT
CGGAACTGCTCTCTGTGGTTTTTGTGGTCTTATGCGGACTAACTTTCTCC
TTTTTAGAATATCTTATAAGCTGTTTGACCTTTCTTACACCAAATTTTTT
TGCCTGCGGCGCCAGAAATACAAAGAACCCTTATTCTTGCCAACTTTCGA
TTTTTTGGGGCCTCTTTCAGCCATTGATCTTTATTGGAGTTCAAGTAAGA
CCAGGAAATAACAAGGAAATAGATATCAAATTATCATTACCACTTACACC
ACCTTCCTATAAATAAAAGTTTGTTAACTCAGAGATTTCGGGCGTTACTT
TCAACCAGTCACTGCTCTTACAGTTTAATAGTTTCACTTAATGGTATAGG
GCGTAAATAAGGACAAAAATACCAGGGGCGCCAATTTCATAGTTTGCACC
ACCAAGAAAATTAAGCCAGGCCGCTACTGCTGGTTATGCATTTAACACAT
ATAATTGATATCTACGTGAGCGTGACCATTAAACAATCATTCAGAATAAA
AATAGTGACGATCTATTAAAATTAGTCGTTTGTTTCTTATAAAAAAACGT
TTAGAAACCAAAATGCTCTTTAAAATATTCTTTCATATTCAAGACTTCGT
GGGCAAAAAAACATATCTCATCAAAAAATTCAGTAATTTGACTAAGAACA
TTGATGTATGCTTATTAATAGTGATACTTATAGATAAACATGCGTTTTTG
AGCCGAAAAATTCTTCTTTTACAAAAATCTGCTTACCAACTTTCATGCAA
AAAGTCAGAAAAAAACAATGATCCAATATTTCAGTAAGTCCTAAAAACCC
TTTTTTGCCGTTTTTTAGCTGAAATTTACCCCAAAAATCTCTTGCCAAAA
ATCTAGCTCCGTCACATTCGCGGTTTATAGTTAAGCATCTTTGTGCAAAA
AATCATAAAGAATGAAAGAGCCAATCTCTAGAAAAGCTAATACCTAAGTA
ATGATAAAAAAATATCAAATTTGGCCAGTTTTTCTATAAAAACACGTCAA
GCAACCAAAATTTCATGTCTGAACACACATATGCTTGAGCCATCTTTTAC
CCATGATGGTACCCTACTTTCATGCAAAAAAATCAGAAAAAATTAATGAT
CCAATTTTTCACAAATCCAAAAAAAAACTGCTTTTTTAGCCGTTTTTTGG
CCCATATTTGCCCCCAAATTTTTTTTCTCGAAAATCAGGCGCCGTCACAT
TCGAGGGTTTATAGTTATGCATCTTTGTGCAAAAAATCAGAAAAAACTAA
TGAGCCAATATCGAGAAAAGCTAGTAACTAACGAACTAACGAACGGACGA
ACATACATCGGTTAATTTATAGGACCTCCGCCGGGGTAGGTCCAAAAACT
AACAGTAAATTTAATAAGTTCCTCGTTCCTACCTTTCCAACGATACCAAA
CTTTTTAAGATTGAAGCATTGGTTGAGAAATAACAATCAAAGCTAAACTT
AGTGCTCACTTATCGTTGATAGACTGTAAAACCGTTATTATAGCGAACGG
TAACGCAGTTTATAAAATTCGTTATTTTGTCGCACAGAAAAATTTTGTTG
AGGACACTTTGGTTGATAAGTGAAATAGCAAAATTATCAGTCTCTGTCTA
AAATGAAATCACTCATGGTATTCGTTATATCTCCTTTGATCCCTGGTGGC
TCCGTCCGTCAAAGGTTTCTTTTTACTTATACGTTTCTCCCAGGAAAGAA
AAAAAATATCCACTCCAATTTCTGATTCTGCACATGGTGTACAAAGGGCT
GTAGCAATGTGTACCTCATGTATGACGTAGCTGAATTATGGAAATTTAGG
GACATGCTTAAAATATTAAGAACTTCTTTTGTGTACACGGTCATCTTTTC
TTTTCTTAGAAAACGGTGAAAAATGCGTTGTTCTAAATCAAATTGTAAAT
ACTGGAAAATGCAAGAAAATTGCAGTGTATCACTAAACACTGAAAAAGAT
GTTTTATATTATTCTCAATTTATACATATATATATATTATTTGTGTTGTA
AATATTATTGTATAAATTCATAAGTTTTTCAAATTTTATAATAAGTAAAG
TAAAGTTCGAAAAGCTTTTTCACTCTCTAATTCGATATCCAGAGGGTATT
TTTAGGCCTTATTGACGGAATTTTAAGTTAAACCTTGATTTTTTAGTGAA
GTTATAGACAAGAAAAAAATATTGAATATTCTTTTCCGAAAAACTTAGTT
TTTTACGAAGACCTTTGATTTTTCCCTAATCGCACCCAAGTGAATGTGAT
CAAATCTCTTAGATTCTACTGGTAGACAACAAAAATTCAACGAAATCGAA
CCGATTGAAAAGAAGTTAGCAAGGACCGTTAAGAAGGAGGGGGTTGTGAA
CGCGGTTCTGATTTCCGAAATACCGATAAGGACTTTGTAGTGAGTTTTCT
TGAAATTAAGGGTAAAATTATTTTAATTTCAATGCTGATATTTTTTTTGA
GCCATTTTGCCGAAAATTAAATTTAAGAATTGATACTCCTCGTTACCGAG
ATTTTAATGTAAAAGTAATTATTTTTGCCGATACCAAACTAATTTTTGGA
TCACCGAAAAAAATTTGTAAGATTTTCAAAATCCCAAATTAAAAAACAGG
TTTCTGCAATACCGAAATCTCGTATAACCCTACCCCCCCCCCATTCGCAG
AAAGGGCTAACGTCACCATGATCAACATGATAATAAAACGCGGTATATAA
GATTCTATTGAGTGGATTCTCCAAAACTCAAACACGCATAGGAAACATAA
ATTTGTTTTAATTATGGAAATTTCGAGTTATGAGATTGGTTCATAATCTA
ATAAGGCATTGTGAAGGACTGAAGGGCAGAAAACTTTTTCGAGTTAACGA
GACCATCCGAGTTGTAAAGGTTCGAGTTATGAAGACTCCACTATATTAAT
ACTGGACACGTTTTTTTTATAAGAATGGTGTTTTTCCAATTCATCATGAA
TATTCTCAACTTTTTGGTGAAAAACATCTTGAAAAAGAATTTGTAAGATT
TTCAAAATCCCAAATTAAAAAACAGGTTTCTGCAATACCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000608-exon-sc0000002-1575043694:1462493..1462606 | TCONS_00000608-exon-sc0000002-1575043694:1462493..1462606 | Clytia hemisphaerica | exon |
TCONS_00000608-exon-sc0000002-1575043694:1461171..1461448 | TCONS_00000608-exon-sc0000002-1575043694:1461171..1461448 | Clytia hemisphaerica | exon |
TCONS_00000608-exon-sc0000002-1575043694:1456666..1457847 | TCONS_00000608-exon-sc0000002-1575043694:1456666..1457847 | Clytia hemisphaerica | exon |
TCONS_00000608-exon-sc0000002-1510915933:1462493..1462606 | TCONS_00000608-exon-sc0000002-1510915933:1462493..1462606 | Clytia hemisphaerica | exon |
TCONS_00000608-exon-sc0000002-1510915933:1461171..1461448 | TCONS_00000608-exon-sc0000002-1510915933:1461171..1461448 | Clytia hemisphaerica | exon |
TCONS_00000608-exon-sc0000002-1510915933:1456666..1457847 | TCONS_00000608-exon-sc0000002-1510915933:1456666..1457847 | Clytia hemisphaerica | exon |
TCONS_00000608-exon-sc0000002-1491911889:1462493..1462606 | TCONS_00000608-exon-sc0000002-1491911889:1462493..1462606 | Clytia hemisphaerica | exon |
TCONS_00000608-exon-sc0000002-1491911889:1461171..1461448 | TCONS_00000608-exon-sc0000002-1491911889:1461171..1461448 | Clytia hemisphaerica | exon |
TCONS_00000608-exon-sc0000002-1491911889:1456666..1457847 | TCONS_00000608-exon-sc0000002-1491911889:1456666..1457847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000002 | supercontig | sc0000002:1456666..1462606 - |
Blast
The following BLAST results are available for this feature:
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