Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000608
Unique NameTCONS_00000608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000608 ID=TCONS_00000608|Name=TCONS_00000608|organism=Clytia hemisphaerica|type=transcript|length=1574bp
TTTTAATGAACGGTTTGAATACATTGAacattgaatttttgttttatttt
cacagAAGTAAACATGTAAAACATTGAGCAGAATAAACCACCACTGAAGA
TTGACAGAAAATGGGTATGCAAAAGTTATTGGTCTTTGTTATCATTCTGT
TTACCTTTCTCAATAACCAAACATCCGCCGCTCCCGTTAATCACCAACAA
CCATCAACTGCTAGTACTCAAACAACTGAAGGCTTTCTAGTCATCAATAT
TCCAGAGTATATGCGCAAAATCACGACAACTCCATTCCCGTACAATACAC
CGACAACACAAGAAACGACAGTTGTTTCAATCCTGTTAATACTTGGTGCT
GTAGCGGCTTTAGTCATGATTTCACAGTTCACATCACTTTTCaaaacGGT
GAAAAATGCGTTGTTCTAAATCAAATTGTAAATACTGGAAAATGCAAGAA
AATTGCAGTGTATCACTAAACACTGAAAAAGATGTTTTATATTATTCTCA
ATTTAtacatatatatatattatttgTGTTGTAAATATTATTGTATAAAT
TcataagtttttcaaattttataataAGTAAAGTAAAGTTCGAAAAGCTT
TttcactctctaattcgatatccAGAGGGTATTTTTAGGCCTTATTGACG
GAATTTTAAGTTAAACCTTGATTTTTTAGTGAAGTTATagacaagaaaaa
aatattgaatattctTTTCCGAAAAACTTAGTTTTTTACGAAGACCTTTG
ATTTTTCCCTAATCGCACCCAAGTGAATGTGATCAAATCTCTTAGATTCT
ACTGGTAGACAACAAAAATTCAACGAAATCGAACCGATTGAAAAGAAGTT
AGCAAGGACCGTTAAGAAGGAGGGGGTTGTGAACGCGGttctgatttccg
aaataccgataAGGACTTTGTAGTGAGTTTTCTTGAAATTAAgggtaaaa
ttattttaatttcaatgctgatattttttttgagCCATTTTGCCGAAAAT
TAAATTTAAGAATTGATACTCCTCGTTACCGAGATTTTAAtgtaaaagta
attatttttgcCGATACCAAACTAATTTTTGGATCACCGAAAAAAATTTG
taagattttcaaaatcccAAATTAAAAAACAGGTTTCTGCAATACCGAAA
TCTCGTATAACCCTACCCCCCCCCCATTCGCAGAAAGGGCTAACGTCACC
ATGATCAACATGATAATAAAACGCGGTATATAAGATTCTATTGAGTGGAT
TCTCCAAAACTCAAACACGCATAGGAAACataaatttgttttaattatgg
aaatttcgagttatgagaTTGGTTCATAATCTAATAAGGCATTGTGAAGG
ACTGAAGGGcagaaaactttttcgagttaacgAGACCATCCGAGTTGtaa
aggttcgagttatgaagactccaCTATATTAATACTggacacgttttttt
tataagaatggtgtttttccaattcatcatgaatattctcaactttttgg
tgaaaaacatcttgaaaaagaatttgtaagattttcaaaatcccAAATTA
AAAAACAGGTTTCTGCAATACCGA
Run BLAST on NCBI

transcript from alignment at sc0000002:1456666..1462606-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000608 ID=TCONS_00000608|Name=TCONS_00000608|organism=Clytia hemisphaerica|type=transcript|length=5941bp|location=Sequence derived from alignment at sc0000002:1456666..1462606- (Clytia hemisphaerica)
TTTTAATGAACGGTTTGAATACATTGAACATTGAATTTTTGTTTTATTTT CACAGAAGTAAACATGTAAAACATTGAGCAGAATAAACCACCACTGAAGA TTGACAGAAAATGGGTAAGTGTGGTAAGGTTCTTTTTTTTTTCGTTTTAT TGATTTCCAAATTTCCGCCCTGTTAGAATATTTAAAGAAGAATAAACGAT CTAAAAAATACCACCTGTCTCAATCTCAATGCCCAAAATAAGAACTTACA GGAATTTTCCAATTCAAAGATCAGTATGTCAGTGGGAGGTTTCCTTAAGG GTTAAAAAATATTCTCCCCTAATCCTTGCCACTATAGAAAAAATACAAGT ATGTTACCTTGTCATGTAAATTCCAAAGATCTGCAAGGGAATACTTTTAC GTCTGTTCGGCAGAATAGAGATTGATGTTAGAAGGATAGAATTATTCGGA GATTCAACCAAGCTGAAATAATGACGATTAGATACAGTTATGATATGTGA TTTTATAGCGCTTCCACGCCAATTTCCAATGAAATGAGATGCAGTTGCTG CGTAAAAACAATTGTTTTTAAAAAACTACACTACATATTAAATTAACACT AGGTAAACACAAAAAGATTTATATATACAGTTAGAATTTCCTGGGTTGTT ACCCGTACTGGAATTTTCTACTTATACTTTTTAATTTTTTCCCTACATAT ATAAAATGTTCACAATCACAGATTCTGCTCACAAAATTTCAAACTCTCAA CAAGGTTATCTAGGATAACCTTTCGCGACTGCGAGCCTCGTGCGAGTATT GTTGCGCGAAGAAGTAAAAAATTTTTTGTTCTAATCGCACGATGAGTTAT TTTCTCTTCTTTGGCTCGCCTTCAAAGACAGCAATTAATCGTTAATTGCA TCCTGTAGAGAGTAATTAATCGTTAATCACACTCTTCAATGACGCGCCAA TGTTTACAAAATTGAGAAGTGAGAAGTGACGAAAAATCAGTCCATACGTC ACTTGTAATCAATTAGCTGTTGGGTTCGTTAAAAACATTACAATGGTGCA TATCATGAATAGGAAAGTTTCACTAGGAATGAGGAAGTTTAGCCATCCCA CGGTACACTTCCATCATTCAATTTAAGCTAAGCTATTGTATTATTTTCTC ATTTATAGGTATGCAAAAGTTATTGGTCTTTGTTATCATTCTGTTTACCT TTCTCAATAACCAAACATCCGCCGCTCCCGTTAATCACCAACAACCATCA ACTGCTAGTACTCAAACAACTGAAGGCTTTCTAGTCATCAATATTCCAGA GTATATGCGCAAAATCACGACAACTCCATTCCCGTACAATACACCGACAA CACAAGAAACGACAGTTGTTTCAATCCTGTTAATACTTGGTGCTGTAGCG GCTTTAGTCATGATTTCACAGTTCACATCACTTTTCGTAAGTTTTCATCT TTTACAGACACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGGCAGG GGGTGCAGGGTGTGCAGTGCACCACCCAGAAAGACCTGAGAGGGGCGCCA AAAAAGCTTTTCAAGGGGGCGCCAAAGTTCTTTTTGATGTTTGGTTGGGC GATTTTGCGCTCTTCGACACGTTTTTAGCGCCTTCTATAAGTGCAATGTA AATTTTTTTTCGCCTGCGGCGCTTCGTTTTATTTTACGATTTTTTTTAAA ACTACTATCAACATTTAATTACAAAAAGTCAAAGCAAGAGAAGTGTTGTG TATCCACCAGGGGTTAAAGAGGATGCTCACCCCCAAAATGAGAGATTGAT CGGAACTGCTCTCTGTGGTTTTTGTGGTCTTATGCGGACTAACTTTCTCC TTTTTAGAATATCTTATAAGCTGTTTGACCTTTCTTACACCAAATTTTTT TGCCTGCGGCGCCAGAAATACAAAGAACCCTTATTCTTGCCAACTTTCGA TTTTTTGGGGCCTCTTTCAGCCATTGATCTTTATTGGAGTTCAAGTAAGA CCAGGAAATAACAAGGAAATAGATATCAAATTATCATTACCACTTACACC ACCTTCCTATAAATAAAAGTTTGTTAACTCAGAGATTTCGGGCGTTACTT TCAACCAGTCACTGCTCTTACAGTTTAATAGTTTCACTTAATGGTATAGG GCGTAAATAAGGACAAAAATACCAGGGGCGCCAATTTCATAGTTTGCACC ACCAAGAAAATTAAGCCAGGCCGCTACTGCTGGTTATGCATTTAACACAT ATAATTGATATCTACGTGAGCGTGACCATTAAACAATCATTCAGAATAAA AATAGTGACGATCTATTAAAATTAGTCGTTTGTTTCTTATAAAAAAACGT TTAGAAACCAAAATGCTCTTTAAAATATTCTTTCATATTCAAGACTTCGT GGGCAAAAAAACATATCTCATCAAAAAATTCAGTAATTTGACTAAGAACA TTGATGTATGCTTATTAATAGTGATACTTATAGATAAACATGCGTTTTTG AGCCGAAAAATTCTTCTTTTACAAAAATCTGCTTACCAACTTTCATGCAA AAAGTCAGAAAAAAACAATGATCCAATATTTCAGTAAGTCCTAAAAACCC TTTTTTGCCGTTTTTTAGCTGAAATTTACCCCAAAAATCTCTTGCCAAAA ATCTAGCTCCGTCACATTCGCGGTTTATAGTTAAGCATCTTTGTGCAAAA AATCATAAAGAATGAAAGAGCCAATCTCTAGAAAAGCTAATACCTAAGTA ATGATAAAAAAATATCAAATTTGGCCAGTTTTTCTATAAAAACACGTCAA GCAACCAAAATTTCATGTCTGAACACACATATGCTTGAGCCATCTTTTAC CCATGATGGTACCCTACTTTCATGCAAAAAAATCAGAAAAAATTAATGAT CCAATTTTTCACAAATCCAAAAAAAAACTGCTTTTTTAGCCGTTTTTTGG CCCATATTTGCCCCCAAATTTTTTTTCTCGAAAATCAGGCGCCGTCACAT TCGAGGGTTTATAGTTATGCATCTTTGTGCAAAAAATCAGAAAAAACTAA TGAGCCAATATCGAGAAAAGCTAGTAACTAACGAACTAACGAACGGACGA ACATACATCGGTTAATTTATAGGACCTCCGCCGGGGTAGGTCCAAAAACT AACAGTAAATTTAATAAGTTCCTCGTTCCTACCTTTCCAACGATACCAAA CTTTTTAAGATTGAAGCATTGGTTGAGAAATAACAATCAAAGCTAAACTT AGTGCTCACTTATCGTTGATAGACTGTAAAACCGTTATTATAGCGAACGG TAACGCAGTTTATAAAATTCGTTATTTTGTCGCACAGAAAAATTTTGTTG AGGACACTTTGGTTGATAAGTGAAATAGCAAAATTATCAGTCTCTGTCTA AAATGAAATCACTCATGGTATTCGTTATATCTCCTTTGATCCCTGGTGGC TCCGTCCGTCAAAGGTTTCTTTTTACTTATACGTTTCTCCCAGGAAAGAA AAAAAATATCCACTCCAATTTCTGATTCTGCACATGGTGTACAAAGGGCT GTAGCAATGTGTACCTCATGTATGACGTAGCTGAATTATGGAAATTTAGG GACATGCTTAAAATATTAAGAACTTCTTTTGTGTACACGGTCATCTTTTC TTTTCTTAGAAAACGGTGAAAAATGCGTTGTTCTAAATCAAATTGTAAAT ACTGGAAAATGCAAGAAAATTGCAGTGTATCACTAAACACTGAAAAAGAT GTTTTATATTATTCTCAATTTATACATATATATATATTATTTGTGTTGTA AATATTATTGTATAAATTCATAAGTTTTTCAAATTTTATAATAAGTAAAG TAAAGTTCGAAAAGCTTTTTCACTCTCTAATTCGATATCCAGAGGGTATT TTTAGGCCTTATTGACGGAATTTTAAGTTAAACCTTGATTTTTTAGTGAA GTTATAGACAAGAAAAAAATATTGAATATTCTTTTCCGAAAAACTTAGTT TTTTACGAAGACCTTTGATTTTTCCCTAATCGCACCCAAGTGAATGTGAT CAAATCTCTTAGATTCTACTGGTAGACAACAAAAATTCAACGAAATCGAA CCGATTGAAAAGAAGTTAGCAAGGACCGTTAAGAAGGAGGGGGTTGTGAA CGCGGTTCTGATTTCCGAAATACCGATAAGGACTTTGTAGTGAGTTTTCT TGAAATTAAGGGTAAAATTATTTTAATTTCAATGCTGATATTTTTTTTGA GCCATTTTGCCGAAAATTAAATTTAAGAATTGATACTCCTCGTTACCGAG ATTTTAATGTAAAAGTAATTATTTTTGCCGATACCAAACTAATTTTTGGA TCACCGAAAAAAATTTGTAAGATTTTCAAAATCCCAAATTAAAAAACAGG TTTCTGCAATACCGAAATCTCGTATAACCCTACCCCCCCCCCATTCGCAG AAAGGGCTAACGTCACCATGATCAACATGATAATAAAACGCGGTATATAA GATTCTATTGAGTGGATTCTCCAAAACTCAAACACGCATAGGAAACATAA ATTTGTTTTAATTATGGAAATTTCGAGTTATGAGATTGGTTCATAATCTA ATAAGGCATTGTGAAGGACTGAAGGGCAGAAAACTTTTTCGAGTTAACGA GACCATCCGAGTTGTAAAGGTTCGAGTTATGAAGACTCCACTATATTAAT ACTGGACACGTTTTTTTTATAAGAATGGTGTTTTTCCAATTCATCATGAA TATTCTCAACTTTTTGGTGAAAAACATCTTGAAAAAGAATTTGTAAGATT TTCAAAATCCCAAATTAAAAAACAGGTTTCTGCAATACCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000356XLOC_000356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000608-exon-sc0000002-1575043694:1462493..1462606TCONS_00000608-exon-sc0000002-1575043694:1462493..1462606Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1575043694:1461171..1461448TCONS_00000608-exon-sc0000002-1575043694:1461171..1461448Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1575043694:1456666..1457847TCONS_00000608-exon-sc0000002-1575043694:1456666..1457847Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1510915933:1462493..1462606TCONS_00000608-exon-sc0000002-1510915933:1462493..1462606Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1510915933:1461171..1461448TCONS_00000608-exon-sc0000002-1510915933:1461171..1461448Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1510915933:1456666..1457847TCONS_00000608-exon-sc0000002-1510915933:1456666..1457847Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1491911889:1462493..1462606TCONS_00000608-exon-sc0000002-1491911889:1462493..1462606Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1491911889:1461171..1461448TCONS_00000608-exon-sc0000002-1491911889:1461171..1461448Clytia hemisphaericaexon
TCONS_00000608-exon-sc0000002-1491911889:1456666..1457847TCONS_00000608-exon-sc0000002-1491911889:1456666..1457847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1456666..1462606 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.386449 0.329489 0.323712 0.54703 5.74337 4.12595 3.17448 2.15636 2.27357 1.51924 4.28912 1.43672 4.77479 4.49146 1.51903 1.64717 6.45689 5.19961 10.5503 11.0338 26.0792 22.578 12.6355 14.4129 10.1834 9.83526 15.8557 12.9676 0.115392 0.176349
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top