TCONS_00000607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000607
Unique NameTCONS_00000607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000607 ID=TCONS_00000607|Name=TCONS_00000607|organism=Clytia hemisphaerica|type=transcript|length=1495bp
CACCACTGAAGATTGACAGAAAATGGGTAAGTGTGGTATGCAAAAGTTAT
TGGTCTTTGTTATCATTCTGTTTACCTTTCTCAATAACCAAACATCCGCC
GCTCCCGTTAATCACCAACAACCATCAACTGCTAGTACTCAAACAACTGA
AGGCTTTCTAGTCATCAATATTCCAGAGTATATGCGCAAAATCACGACAA
CTCCATTCCCGTACAATACACCGACAACACAAGAAACGACAGTTGTTTCA
ATCCTGTTAATACTTGGTGCTGTAGCGGCTTTAGTCATGATTTCACAGTT
CACATCACTTTTCaaaacGGTGAAAAATGCGTTGTTCTAAATCAAATTGT
AAATACTGGAAAATGCAAGAAAATTGCAGTGTATCACTAAACACTGAAAA
AGATGTTTTATATTATTCTCAATTTAtacatatatatatattatttgTGT
TGTAAATATTATTGTATAAATTcataagtttttcaaattttataataAGT
AAAGTAAAGTTCGAAAAGCTTTttcactctctaattcgatatccAGAGGG
TATTTTTAGGCCTTATTGACGGAATTTTAAGTTAAACCTTGATTTTTTAG
TGAAGTTATagacaagaaaaaaatattgaatattctTTTCCGAAAAACTT
AGTTTTTTACGAAGACCTTTGATTTTTCCCTAATCGCACCCAAGTGAATG
TGATCAAATCTCTTAGATTCTACTGGTAGACAACAAAAATTCAACGAAAT
CGAACCGATTGAAAAGAAGTTAGCAAGGACCGTTAAGAAGGAGGGGGTTG
TGAACGCGGttctgatttccgaaataccgataAGGACTTTGTAGTGAGTT
TTCTTGAAATTAAgggtaaaattattttaatttcaatgctgatatttttt
ttgagCCATTTTGCCGAAAATTAAATTTAAGAATTGATACTCCTCGTTAC
CGAGATTTTAAtgtaaaagtaattatttttgcCGATACCAAACTAATTTT
TGGATCACCGAAAAAAATTTGtaagattttcaaaatcccAAATTAAAAAA
CAGGTTTCTGCAATACCGAAATCTCGTATAACCCTACCCCCCCCCCATTC
GCAGAAAGGGCTAACGTCACCATGATCAACATGATAATAAAACGCGGTAT
ATAAGATTCTATTGAGTGGATTCTCCAAAACTCAAACACGCATAGGAAAC
ataaatttgttttaattatggaaatttcgagttatgagaTTGGTTCATAA
TCTAATAAGGCATTGTGAAGGACTGAAGGGcagaaaactttttcgagtta
acgAGACCATCCGAGTTGtaaaggttcgagttatgaagactccaCTATAT
TAATACTggacacgttttttttataagaatggtgtttttccaattcatca
tgaatattctcaactttttggtgaaaaacatcttgaaaaagaatttgtaa
gattttcaaaatcccAAATTAAAAAACAGGTTTCTGCAATACCGA
Run BLAST on NCBI

protein sequence of TCONS_00000607-protein

>TCONS_00000607-protein ID=TCONS_00000607-protein|Name=TCONS_00000607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MGKCGMQKLLVFVIILFTFLNNQTSAAPVNHQQPSTASTQTTEGFLVINI
PEYMRKITTTPFPYNTPTTQETTVVSILLILGAVAALVMISQFTSLFKTV
KNALF
Run BLAST on NCBI

transcript from alignment at sc0000002:1456666..1462518-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000607 ID=TCONS_00000607|Name=TCONS_00000607|organism=Clytia hemisphaerica|type=transcript|length=5853bp|location=Sequence derived from alignment at sc0000002:1456666..1462518- (Clytia hemisphaerica)
CACCACTGAAGATTGACAGAAAATGGGTAAGTGTGGTAAGGTTCTTTTTT
TTTTCGTTTTATTGATTTCCAAATTTCCGCCCTGTTAGAATATTTAAAGA
AGAATAAACGATCTAAAAAATACCACCTGTCTCAATCTCAATGCCCAAAA
TAAGAACTTACAGGAATTTTCCAATTCAAAGATCAGTATGTCAGTGGGAG
GTTTCCTTAAGGGTTAAAAAATATTCTCCCCTAATCCTTGCCACTATAGA
AAAAATACAAGTATGTTACCTTGTCATGTAAATTCCAAAGATCTGCAAGG
GAATACTTTTACGTCTGTTCGGCAGAATAGAGATTGATGTTAGAAGGATA
GAATTATTCGGAGATTCAACCAAGCTGAAATAATGACGATTAGATACAGT
TATGATATGTGATTTTATAGCGCTTCCACGCCAATTTCCAATGAAATGAG
ATGCAGTTGCTGCGTAAAAACAATTGTTTTTAAAAAACTACACTACATAT
TAAATTAACACTAGGTAAACACAAAAAGATTTATATATACAGTTAGAATT
TCCTGGGTTGTTACCCGTACTGGAATTTTCTACTTATACTTTTTAATTTT
TTCCCTACATATATAAAATGTTCACAATCACAGATTCTGCTCACAAAATT
TCAAACTCTCAACAAGGTTATCTAGGATAACCTTTCGCGACTGCGAGCCT
CGTGCGAGTATTGTTGCGCGAAGAAGTAAAAAATTTTTTGTTCTAATCGC
ACGATGAGTTATTTTCTCTTCTTTGGCTCGCCTTCAAAGACAGCAATTAA
TCGTTAATTGCATCCTGTAGAGAGTAATTAATCGTTAATCACACTCTTCA
ATGACGCGCCAATGTTTACAAAATTGAGAAGTGAGAAGTGACGAAAAATC
AGTCCATACGTCACTTGTAATCAATTAGCTGTTGGGTTCGTTAAAAACAT
TACAATGGTGCATATCATGAATAGGAAAGTTTCACTAGGAATGAGGAAGT
TTAGCCATCCCACGGTACACTTCCATCATTCAATTTAAGCTAAGCTATTG
TATTATTTTCTCATTTATAGGTATGCAAAAGTTATTGGTCTTTGTTATCA
TTCTGTTTACCTTTCTCAATAACCAAACATCCGCCGCTCCCGTTAATCAC
CAACAACCATCAACTGCTAGTACTCAAACAACTGAAGGCTTTCTAGTCAT
CAATATTCCAGAGTATATGCGCAAAATCACGACAACTCCATTCCCGTACA
ATACACCGACAACACAAGAAACGACAGTTGTTTCAATCCTGTTAATACTT
GGTGCTGTAGCGGCTTTAGTCATGATTTCACAGTTCACATCACTTTTCGT
AAGTTTTCATCTTTTACAGACACCANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCTGGCAGGGGGTGCAGGGTGTGCAGTGCACCACCCAGAAAGACCTG
AGAGGGGCGCCAAAAAAGCTTTTCAAGGGGGCGCCAAAGTTCTTTTTGAT
GTTTGGTTGGGCGATTTTGCGCTCTTCGACACGTTTTTAGCGCCTTCTAT
AAGTGCAATGTAAATTTTTTTTCGCCTGCGGCGCTTCGTTTTATTTTACG
ATTTTTTTTAAAACTACTATCAACATTTAATTACAAAAAGTCAAAGCAAG
AGAAGTGTTGTGTATCCACCAGGGGTTAAAGAGGATGCTCACCCCCAAAA
TGAGAGATTGATCGGAACTGCTCTCTGTGGTTTTTGTGGTCTTATGCGGA
CTAACTTTCTCCTTTTTAGAATATCTTATAAGCTGTTTGACCTTTCTTAC
ACCAAATTTTTTTGCCTGCGGCGCCAGAAATACAAAGAACCCTTATTCTT
GCCAACTTTCGATTTTTTGGGGCCTCTTTCAGCCATTGATCTTTATTGGA
GTTCAAGTAAGACCAGGAAATAACAAGGAAATAGATATCAAATTATCATT
ACCACTTACACCACCTTCCTATAAATAAAAGTTTGTTAACTCAGAGATTT
CGGGCGTTACTTTCAACCAGTCACTGCTCTTACAGTTTAATAGTTTCACT
TAATGGTATAGGGCGTAAATAAGGACAAAAATACCAGGGGCGCCAATTTC
ATAGTTTGCACCACCAAGAAAATTAAGCCAGGCCGCTACTGCTGGTTATG
CATTTAACACATATAATTGATATCTACGTGAGCGTGACCATTAAACAATC
ATTCAGAATAAAAATAGTGACGATCTATTAAAATTAGTCGTTTGTTTCTT
ATAAAAAAACGTTTAGAAACCAAAATGCTCTTTAAAATATTCTTTCATAT
TCAAGACTTCGTGGGCAAAAAAACATATCTCATCAAAAAATTCAGTAATT
TGACTAAGAACATTGATGTATGCTTATTAATAGTGATACTTATAGATAAA
CATGCGTTTTTGAGCCGAAAAATTCTTCTTTTACAAAAATCTGCTTACCA
ACTTTCATGCAAAAAGTCAGAAAAAAACAATGATCCAATATTTCAGTAAG
TCCTAAAAACCCTTTTTTGCCGTTTTTTAGCTGAAATTTACCCCAAAAAT
CTCTTGCCAAAAATCTAGCTCCGTCACATTCGCGGTTTATAGTTAAGCAT
CTTTGTGCAAAAAATCATAAAGAATGAAAGAGCCAATCTCTAGAAAAGCT
AATACCTAAGTAATGATAAAAAAATATCAAATTTGGCCAGTTTTTCTATA
AAAACACGTCAAGCAACCAAAATTTCATGTCTGAACACACATATGCTTGA
GCCATCTTTTACCCATGATGGTACCCTACTTTCATGCAAAAAAATCAGAA
AAAATTAATGATCCAATTTTTCACAAATCCAAAAAAAAACTGCTTTTTTA
GCCGTTTTTTGGCCCATATTTGCCCCCAAATTTTTTTTCTCGAAAATCAG
GCGCCGTCACATTCGAGGGTTTATAGTTATGCATCTTTGTGCAAAAAATC
AGAAAAAACTAATGAGCCAATATCGAGAAAAGCTAGTAACTAACGAACTA
ACGAACGGACGAACATACATCGGTTAATTTATAGGACCTCCGCCGGGGTA
GGTCCAAAAACTAACAGTAAATTTAATAAGTTCCTCGTTCCTACCTTTCC
AACGATACCAAACTTTTTAAGATTGAAGCATTGGTTGAGAAATAACAATC
AAAGCTAAACTTAGTGCTCACTTATCGTTGATAGACTGTAAAACCGTTAT
TATAGCGAACGGTAACGCAGTTTATAAAATTCGTTATTTTGTCGCACAGA
AAAATTTTGTTGAGGACACTTTGGTTGATAAGTGAAATAGCAAAATTATC
AGTCTCTGTCTAAAATGAAATCACTCATGGTATTCGTTATATCTCCTTTG
ATCCCTGGTGGCTCCGTCCGTCAAAGGTTTCTTTTTACTTATACGTTTCT
CCCAGGAAAGAAAAAAAATATCCACTCCAATTTCTGATTCTGCACATGGT
GTACAAAGGGCTGTAGCAATGTGTACCTCATGTATGACGTAGCTGAATTA
TGGAAATTTAGGGACATGCTTAAAATATTAAGAACTTCTTTTGTGTACAC
GGTCATCTTTTCTTTTCTTAGAAAACGGTGAAAAATGCGTTGTTCTAAAT
CAAATTGTAAATACTGGAAAATGCAAGAAAATTGCAGTGTATCACTAAAC
ACTGAAAAAGATGTTTTATATTATTCTCAATTTATACATATATATATATT
ATTTGTGTTGTAAATATTATTGTATAAATTCATAAGTTTTTCAAATTTTA
TAATAAGTAAAGTAAAGTTCGAAAAGCTTTTTCACTCTCTAATTCGATAT
CCAGAGGGTATTTTTAGGCCTTATTGACGGAATTTTAAGTTAAACCTTGA
TTTTTTAGTGAAGTTATAGACAAGAAAAAAATATTGAATATTCTTTTCCG
AAAAACTTAGTTTTTTACGAAGACCTTTGATTTTTCCCTAATCGCACCCA
AGTGAATGTGATCAAATCTCTTAGATTCTACTGGTAGACAACAAAAATTC
AACGAAATCGAACCGATTGAAAAGAAGTTAGCAAGGACCGTTAAGAAGGA
GGGGGTTGTGAACGCGGTTCTGATTTCCGAAATACCGATAAGGACTTTGT
AGTGAGTTTTCTTGAAATTAAGGGTAAAATTATTTTAATTTCAATGCTGA
TATTTTTTTTGAGCCATTTTGCCGAAAATTAAATTTAAGAATTGATACTC
CTCGTTACCGAGATTTTAATGTAAAAGTAATTATTTTTGCCGATACCAAA
CTAATTTTTGGATCACCGAAAAAAATTTGTAAGATTTTCAAAATCCCAAA
TTAAAAAACAGGTTTCTGCAATACCGAAATCTCGTATAACCCTACCCCCC
CCCCATTCGCAGAAAGGGCTAACGTCACCATGATCAACATGATAATAAAA
CGCGGTATATAAGATTCTATTGAGTGGATTCTCCAAAACTCAAACACGCA
TAGGAAACATAAATTTGTTTTAATTATGGAAATTTCGAGTTATGAGATTG
GTTCATAATCTAATAAGGCATTGTGAAGGACTGAAGGGCAGAAAACTTTT
TCGAGTTAACGAGACCATCCGAGTTGTAAAGGTTCGAGTTATGAAGACTC
CACTATATTAATACTGGACACGTTTTTTTTATAAGAATGGTGTTTTTCCA
ATTCATCATGAATATTCTCAACTTTTTGGTGAAAAACATCTTGAAAAAGA
ATTTGTAAGATTTTCAAAATCCCAAATTAAAAAACAGGTTTCTGCAATAC
CGA

Coding sequence (CDS) from alignment at sc0000002:1456666..1462518-

>TCONS_00000607 ID=TCONS_00000607|Name=TCONS_00000607|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000002:1456666..1462518- (Clytia hemisphaerica)
AAAACGGTGAAAAATGCGTTGTTCTAAGTATGCAAAAGTTATTGGTCTTT
GTTATCATTCTGTTTACCTTTCTCAATAACCAAACATCCGCCGCTCCCGT
TAATCACCAACAACCATCAACTGCTAGTACTCAAACAACTGAAGGCTTTC
TAGTCATCAATATTCCAGAGTATATGCGCAAAATCACGACAACTCCATTC
CCGTACAATACACCGACAACACAAGAAACGACAGTTGTTTCAATCCTGTT
AATACTTGGTGCTGTAGCGGCTTTAGTCATGATTTCACAGTTCACATCAC
TTTTCATGGGTAAGTGTGAAAACGGTGAAAAATGCGTTGTTCTAAGTATG
CAAAAGTTATTGGTCTTTGTTATCATTCTGTTTACCTTTCTCAATAACCA
AACATCCGCCGCTCCCGTTAATCACCAACAACCATCAACTGCTAGTACTC
AAACAACTGAAGGCTTTCTAGTCATCAATATTCCAGAGTATATGCGCAAA
ATCACGACAACTCCATTCCCGTACAATACACCGACAACACAAGAAACGAC
AGTTGTTTCAATCCTGTTAATACTTGGTGCTGTAGCGGCTTTAGTCATGA
TTTCACAGTTCACATCACTTTTCATGGGTAAGTGTGAAAACGGTGAAAAA
TGCGTTGTTCTAAGTATGCAAAAGTTATTGGTCTTTGTTATCATTCTGTT
TACCTTTCTCAATAACCAAACATCCGCCGCTCCCGTTAATCACCAACAAC
CATCAACTGCTAGTACTCAAACAACTGAAGGCTTTCTAGTCATCAATATT
CCAGAGTATATGCGCAAAATCACGACAACTCCATTCCCGTACAATACACC
GACAACACAAGAAACGACAGTTGTTTCAATCCTGTTAATACTTGGTGCTG
TAGCGGCTTTAGTCATGATTTCACAGTTCACATCACTTTTCATGGGTAAG
TGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000356XLOC_000356Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000607-proteinTCONS_00000607-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000607-exon-sc0000002-1575043694:1462484..1462518TCONS_00000607-exon-sc0000002-1575043694:1462484..1462518Clytia hemisphaericaexon
TCONS_00000607-exon-sc0000002-1575043694:1461171..1461448TCONS_00000607-exon-sc0000002-1575043694:1461171..1461448Clytia hemisphaericaexon
TCONS_00000607-exon-sc0000002-1575043694:1456666..1457847TCONS_00000607-exon-sc0000002-1575043694:1456666..1457847Clytia hemisphaericaexon
TCONS_00000607-exon-sc0000002-1510915933:1462484..1462518TCONS_00000607-exon-sc0000002-1510915933:1462484..1462518Clytia hemisphaericaexon
TCONS_00000607-exon-sc0000002-1510915933:1461171..1461448TCONS_00000607-exon-sc0000002-1510915933:1461171..1461448Clytia hemisphaericaexon
TCONS_00000607-exon-sc0000002-1510915933:1456666..1457847TCONS_00000607-exon-sc0000002-1510915933:1456666..1457847Clytia hemisphaericaexon
TCONS_00000607-exon-sc0000002-1491911889:1462484..1462518TCONS_00000607-exon-sc0000002-1491911889:1462484..1462518Clytia hemisphaericaexon
TCONS_00000607-exon-sc0000002-1491911889:1461171..1461448TCONS_00000607-exon-sc0000002-1491911889:1461171..1461448Clytia hemisphaericaexon
TCONS_00000607-exon-sc0000002-1491911889:1456666..1457847TCONS_00000607-exon-sc0000002-1491911889:1456666..1457847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1456666..1462518 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.142167	0	0.841746	0	0.21215	0.23942	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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