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TCONS_00000606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000606
Unique NameTCONS_00000606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000606 ID=TCONS_00000606|Name=TCONS_00000606|organism=Clytia hemisphaerica|type=transcript|length=1773bp
TGTATAAGATTCTATTGAGTGGATTCTTCATTACTCAAACACGCATAGGA
AACgtaaatttgttcgaattatggaaatttcgagttatgagaTTGGTTCA
TAATCTAATAAGGCATTGTGAAGGACTGAAGGGcagaaaactttttcgag
ttaacgAGACCATCCGAGTTGtaaaggttcgagttatgaagactccaCTA
TATTAATACTggacacgttttttttataagaatggtgtttttccaattca
tcatgagaatattctcaactttttggtgaaaaacaTCTTGAACTATTCTT
TCGGTTTTCTTGGGTTTGGAACCAAACCCAGCCAAAATCTagcatgtaat
acatacctgaagcaaaaatttggcatttttgtggaACCTTATTTGCATTG
CTGGGGAAAAACTGGCTATTTAATGGTgaaaaaatgctctaaaaacgGTA
TTCTCTGGTTCAGTTGTCGAATTCAATAATTGtggtattcttaccatatt
ctgaaatttttggcaaattttatcatgaatattcttataaagtatatatt
CCTATTTAAAAAAGCATGTATTCACTTTACGTCTAATTAATCTTGAAGTG
ACATTGTAATTACCTTGCAATTAATATTTCTGTTAATTGTGAAATATGAA
CATCTCCTAATTAGAAATGGCATAGATTGAATAATATATCTGCTTGTAGA
GGCCAGCTTGCTGTTTATAGGTGATAAAAATGGCGAGTAAGTaaaacctt
ttctttttctttctttgccATTGTGTTGTGTTTGGAAGCAAATCAATCAT
TTCATCTAAGATGAGGTAGTTTTACTAGGCACTCTAGAGTATCATTATCT
AAACAAGTGTTGGCAAAACTCTCTCTCAATTTTGAATCTCCCCTTTTACG
TCCGCCACTAagaaagcttttcaaaaagtctcATAAATCCTCAAAATGTA
TCTCGTTTGTCACAGGGTATTGATGATTGATTTAAGACACCCGTCAAGGC
CGTTCCCCCAGCCTCGACACAAGCAAGGTTATGGAAGTTTTTTGTATGCT
CTTCAGTACTTTATTGCAGAGGGTCTAGAAAGGGtaaacaaaattctttt
ttagagTAGTTGGAGAGGtaataaaataacaaaagtgTTTCTCACACTAA
ACACGTTTTAAAAGCCGTTAACTTTTTTAAAGGGAGCTTCAAACTGTTTT
TGAAATAGATCACGTTGGTCAAAATATGGcaattttctccaaaattttcg
aaaaatgacaCTTCTCAATTAAGCGCAGAAAAGTACAACATAAAATCGCA
AATTTATAAAATTCATTCTTTCCATTATCATCATAGAGTTCGTACTTGCT
ATTACTTTAATTTACCTAACAATCGTATCCATTGCTGATGGTCGACCTAT
TGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAAACAATC
AGAATGCAAATCCAGCAATACTTACTATCATACCATCAACAACTACTGAA
CCATATACCACAGGTTTGATGCACCTATTCGCCCCTGTTTCATTGTTACC
TGCTTTAAAGCCTTTATAAGTATTATTAGTAGGGGGCAAACCCTTCAGGC
ACAGGTCCTAAGCCCCCCTACTATAAGGCTGAAATCTGTCCAAAACCTAA
GAACCAACCAAGAACCAAACGAGCCTTAGAATTTAGAAATTGCTAAGAAA
ATACTAAAAAGTTCCTTTTGAAAGCTCTTTAGTAAGGAAAATGAGAACGA
ATTAAagacattttaagcctaaa
Run BLAST on NCBI

transcript from alignment at sc0000002:1454814..1456586-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000606 ID=TCONS_00000606|Name=TCONS_00000606|organism=Clytia hemisphaerica|type=transcript|length=1773bp|location=Sequence derived from alignment at sc0000002:1454814..1456586- (Clytia hemisphaerica)
TGTATAAGATTCTATTGAGTGGATTCTTCATTACTCAAACACGCATAGGA AACGTAAATTTGTTCGAATTATGGAAATTTCGAGTTATGAGATTGGTTCA TAATCTAATAAGGCATTGTGAAGGACTGAAGGGCAGAAAACTTTTTCGAG TTAACGAGACCATCCGAGTTGTAAAGGTTCGAGTTATGAAGACTCCACTA TATTAATACTGGACACGTTTTTTTTATAAGAATGGTGTTTTTCCAATTCA TCATGAGAATATTCTCAACTTTTTGGTGAAAAACATCTTGAACTATTCTT TCGGTTTTCTTGGGTTTGGAACCAAACCCAGCCAAAATCTAGCATGTAAT ACATACCTGAAGCAAAAATTTGGCATTTTTGTGGAACCTTATTTGCATTG CTGGGGAAAAACTGGCTATTTAATGGTGAAAAAATGCTCTAAAAACGGTA TTCTCTGGTTCAGTTGTCGAATTCAATAATTGTGGTATTCTTACCATATT CTGAAATTTTTGGCAAATTTTATCATGAATATTCTTATAAAGTATATATT CCTATTTAAAAAAGCATGTATTCACTTTACGTCTAATTAATCTTGAAGTG ACATTGTAATTACCTTGCAATTAATATTTCTGTTAATTGTGAAATATGAA CATCTCCTAATTAGAAATGGCATAGATTGAATAATATATCTGCTTGTAGA GGCCAGCTTGCTGTTTATAGGTGATAAAAATGGCGAGTAAGTAAAACCTT TTCTTTTTCTTTCTTTGCCATTGTGTTGTGTTTGGAAGCAAATCAATCAT TTCATCTAAGATGAGGTAGTTTTACTAGGCACTCTAGAGTATCATTATCT AAACAAGTGTTGGCAAAACTCTCTCTCAATTTTGAATCTCCCCTTTTACG TCCGCCACTAAGAAAGCTTTTCAAAAAGTCTCATAAATCCTCAAAATGTA TCTCGTTTGTCACAGGGTATTGATGATTGATTTAAGACACCCGTCAAGGC CGTTCCCCCAGCCTCGACACAAGCAAGGTTATGGAAGTTTTTTGTATGCT CTTCAGTACTTTATTGCAGAGGGTCTAGAAAGGGTAAACAAAATTCTTTT TTAGAGTAGTTGGAGAGGTAATAAAATAACAAAAGTGTTTCTCACACTAA ACACGTTTTAAAAGCCGTTAACTTTTTTAAAGGGAGCTTCAAACTGTTTT TGAAATAGATCACGTTGGTCAAAATATGGCAATTTTCTCCAAAATTTTCG AAAAATGACACTTCTCAATTAAGCGCAGAAAAGTACAACATAAAATCGCA AATTTATAAAATTCATTCTTTCCATTATCATCATAGAGTTCGTACTTGCT ATTACTTTAATTTACCTAACAATCGTATCCATTGCTGATGGTCGACCTAT TGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAAACAATC AGAATGCAAATCCAGCAATACTTACTATCATACCATCAACAACTACTGAA CCATATACCACAGGTTTGATGCACCTATTCGCCCCTGTTTCATTGTTACC TGCTTTAAAGCCTTTATAAGTATTATTAGTAGGGGGCAAACCCTTCAGGC ACAGGTCCTAAGCCCCCCTACTATAAGGCTGAAATCTGTCCAAAACCTAA GAACCAACCAAGAACCAAACGAGCCTTAGAATTTAGAAATTGCTAAGAAA ATACTAAAAAGTTCCTTTTGAAAGCTCTTTAGTAAGGAAAATGAGAACGA ATTAAAGACATTTTAAGCCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000355XLOC_000355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000606-exon-sc0000002-1575043694:1454814..1456586TCONS_00000606-exon-sc0000002-1575043694:1454814..1456586Clytia hemisphaericaexon
TCONS_00000606-exon-sc0000002-1510915933:1454814..1456586TCONS_00000606-exon-sc0000002-1510915933:1454814..1456586Clytia hemisphaericaexon
TCONS_00000606-exon-sc0000002-1491911889:1454814..1456586TCONS_00000606-exon-sc0000002-1491911889:1454814..1456586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1454814..1456586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0584859 0 2.97536e-10 0.0524884 0 0 0.0676452 0 0.0555153 0.0525515 0 0.179825 0.0527695 0.155623 0 0.0950582 0.0693544 0.184555 0.167281 0 1.16948 0.516274 0 0 0 0.0947322 0.744736 0.162286 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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