|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000605 ID=TCONS_00000605|Name=TCONS_00000605|organism=Clytia hemisphaerica|type=transcript|length=2032bp
TGTATAAGATTCTATTGAGTGGATTCTTCATTACTCAAACACGCATAGGA
AACgtaaatttgttcgaattatggaaatttcgagttatgagaTTGGTTCA
TAATCTAATAAGGCATTGTGAAGGACTGAAGGGcagaaaactttttcgag
ttaacgAGACCATCCGAGTTGtaaaggttcgagttatgaagactccaCTA
TATTAATACTggacacgttttttttataagaatggtgtttttccaattca
tcatgagaatattctcaactttttggtgaaaaacaTCTTGAACTATTCTT
TCGGTTTTCTTGGGTTTGGAACCAAACCCAGCCAAAATCTagcatgtaat
acatacctgaagcaaaaatttggcatttttgtggaACCTTATTTGCATTG
CTGGGGAAAAACTGGCTATTTAATGGTgaaaaaatgctctaaaaacgGTA
TTCTCTGGTTCAGTTGTCGAATTCAATAATTGtggtattcttaccatatt
ctgaaatttttggcaaattttatcatgaatattcttataaagtatatatt
CCTATTTAAAAAAGCATGTATTCACTTTACGTCTAATTAATCTTGAAGTG
ACATTGTAATTACCTTGCAATTAATATTTCTGTTAATTGTGAAATATGAA
CATCTCCTAATTAGAAATGGCATAGATTGAATAATATATCTGCTTGTAGA
GGCCAGCTTGCTGTTTATAGGTGATAAAAATGGCGAGTAAGTaaaacctt
ttctttttctttctttgccATTGTGTTGTGTTTGGAAGCAAATCAATCAT
TTCATCTAAGATGAGGTAGTTTTACTAGGCACTCTAGAGTATCATTATCT
AAACAAGTGTTGGCAAAACTCTCTCTCAATTTTGAATCTCCCCTTTTACG
TCCGCCACTAagaaagcttttcaaaaagtctcATAAATCCTCAAAATGTA
TCTCGTTTGTCACAGGGTATTGATGATTGATTTAAGACACCCGTCAAGGC
CGTTCCCCCAGCCTCGACACAAGCAAGGTTATGGAAGTTTTTTGTATGCT
CTTCAGTACTTTATTGCAGAGGGTCTAGAAAGGGtaaacaaaattctttt
ttagagTAGTTGGAGAGGtaataaaataacaaaagtgTTTCTCACACTAA
ACACGTTTTAAAAGCCGTTAACTTTTTTAAAGGGAGCTTCAAACTGTTTT
TGAAATAGATCACGTTGGTCAAAATATGGcaattttctccaaaattttcg
aaaaatgacaCTTCTCAATTAAGCGCAGAAAAGTACAACATAAAATCGCA
AATTTATAAAATTCATTCTTTCCATTATCATCATAGAGTTCGTACTTGCT
ATTACTTTAATTTACCTAACAATCGTATCCATTGCTGATGGTCGACCTAT
TGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAAACAATC
AGAATGCAAATCCAGCAATACTTACTATCATACCATCAACAACTACTGAA
CCATATACCACAGAGGATATTGGAGTGAGGACATCAAGTACGGATGAGAA
AGTCATCATTGCAATCATCATCTTATTTGCTGGCATCACTTTAGTGGTCA
TGGTTCTTCAATGGTATGCTTGTCTGtgtcCTGAAAAATCCTACGTGTGA
AGAACAAGGAAAAGGGAATTGAAGAAAGCAGTGATGAGTCAGCAAATTTT
GGTGCAGGGGTtccaaaaaatgccaaattGAAGGACAATTGCACAAGAGA
TTAACTTGATTCTATTGCTAGGAAAACCAACAATATTGAAACATTCCCAA
AAGTTTTGTATTGATTTTTGAACCTCGGCTTTCAACAATATATAATCCAA
GATCCTGATATAGTACATAAAACGTGTAAATAGAATATTCCATTGACTTT
TTAAGAATCagtaaaacttgaaaaaaaatcttgaaattactaaaaatgAA
TTTGGTAAATTTATCTCTCTAAATATGTTTTCTCATTACTCAGTACAAAT
TGAAATTTCAGGCATCATTTACTCTTGTTACC Run BLAST on NCBI transcript from alignment at sc0000002:1453197..1456586- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000605 ID=TCONS_00000605|Name=TCONS_00000605|organism=Clytia hemisphaerica|type=transcript|length=3390bp|location=Sequence derived from alignment at sc0000002:1453197..1456586- (Clytia hemisphaerica)
TGTATAAGATTCTATTGAGTGGATTCTTCATTACTCAAACACGCATAGGA
AACGTAAATTTGTTCGAATTATGGAAATTTCGAGTTATGAGATTGGTTCA
TAATCTAATAAGGCATTGTGAAGGACTGAAGGGCAGAAAACTTTTTCGAG
TTAACGAGACCATCCGAGTTGTAAAGGTTCGAGTTATGAAGACTCCACTA
TATTAATACTGGACACGTTTTTTTTATAAGAATGGTGTTTTTCCAATTCA
TCATGAGAATATTCTCAACTTTTTGGTGAAAAACATCTTGAACTATTCTT
TCGGTTTTCTTGGGTTTGGAACCAAACCCAGCCAAAATCTAGCATGTAAT
ACATACCTGAAGCAAAAATTTGGCATTTTTGTGGAACCTTATTTGCATTG
CTGGGGAAAAACTGGCTATTTAATGGTGAAAAAATGCTCTAAAAACGGTA
TTCTCTGGTTCAGTTGTCGAATTCAATAATTGTGGTATTCTTACCATATT
CTGAAATTTTTGGCAAATTTTATCATGAATATTCTTATAAAGTATATATT
CCTATTTAAAAAAGCATGTATTCACTTTACGTCTAATTAATCTTGAAGTG
ACATTGTAATTACCTTGCAATTAATATTTCTGTTAATTGTGAAATATGAA
CATCTCCTAATTAGAAATGGCATAGATTGAATAATATATCTGCTTGTAGA
GGCCAGCTTGCTGTTTATAGGTGATAAAAATGGCGAGTAAGTAAAACCTT
TTCTTTTTCTTTCTTTGCCATTGTGTTGTGTTTGGAAGCAAATCAATCAT
TTCATCTAAGATGAGGTAGTTTTACTAGGCACTCTAGAGTATCATTATCT
AAACAAGTGTTGGCAAAACTCTCTCTCAATTTTGAATCTCCCCTTTTACG
TCCGCCACTAAGAAAGCTTTTCAAAAAGTCTCATAAATCCTCAAAATGTA
TCTCGTTTGTCACAGGGTATTGATGATTGATTTAAGACACCCGTCAAGGC
CGTTCCCCCAGCCTCGACACAAGCAAGGTTATGGAAGTTTTTTGTATGCT
CTTCAGTACTTTATTGCAGAGGGTCTAGAAAGGGTAAACAAAATTCTTTT
TTAGAGTAGTTGGAGAGGTAATAAAATAACAAAAGTGTTTCTCACACTAA
ACACGTTTTAAAAGCCGTTAACTTTTTTAAAGGGAGCTTCAAACTGTTTT
TGAAATAGATCACGTTGGTCAAAATATGGCAATTTTCTCCAAAATTTTCG
AAAAATGACACTTCTCAATTAAGCGCAGAAAAGTACAACATAAAATCGCA
AATTTATAAAATTCATTCTTTCCATTATCATCATAGAGTTCGTACTTGCT
ATTACTTTAATTTACCTAACAATCGTATCCATTGCTGATGGTCGACCTAT
TGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAAACAATC
AGAATGCAAATCCAGCAATACTTACTATCATACCATCAACAACTACTGAA
CCATATACCACAGGTTTGATGCACCTATTCGCCCCTGTTTCATTGTTACC
TGCTTTAAAGCCTTTATAAGTATTATTAGTAGGGGGCAAACCCTTCAGGC
ACAGGTCCTAAGCCCCCCTACTATAAGGCTGAAATCTGTCCAAAACCTAA
GAACCAACCAAGAACCAAACGAGCCTTAGAATTTAGAAATTGCTAAGAAA
ATACTAAAAAGTTCCTTTTGAAAGCTCTTTAGTAAGGAAAATGAGAACGA
ATTAAAGACATTTTAAGCCTAAAAATTAGGAAAAAATAGGAACAGCAACT
TAAGGCTTAGTTTTGGGAGAATGACGGATCGGAGAGGGTATTTAATCGGA
ATGAAAACTTCCCGATTTATGGTCAACCTCGTCTCCGTGTATGCCAGGCT
TTATTTACGTTACTGATGGGCCAGAGAATGTCTGGCGCCACCAATAAGTA
CTGTTACGCAGAGAATGAGGTCGATGAGGTTACCTTTTCTCACCGGGAAT
ATTATGGGAGTTTTTTACAACCTGGGGCCACGGCTTCACTTTGAAAGTGG
CAGGGCTATGGTTTAGTGTCTAAAGACGTTCCACCATGGTCGGCGCTGAC
AGGAGAAATTTTTGAAAATTAGTTCTTCTACACTGCCTAAAACAGGTCTT
TTTCAAGGTTTATACGCAGAATTTAGCTGAATCAGTGAATTTTCTTTTTG
CTTTGAAAAAATGTGGTCGGGCCAATGCCCAGGTGGACCCCCCTACCGTG
GCCCCTGCAACACCTTCTAATGGGGAAGCAGTCCANTGCCCAGGTGGACC
CCCCTATCGTGGCCCCTGCAACACCTTCTAATGGGGAAGCAGTCCAACAT
GTTAAGCGAACGTATTTTACTTTTTCCGTACCTTTTCAGAGGATATTGGA
GTGAGGACATCAAGTACGGATGAGAAAGTCATCATTGCAATCATCATCTT
ATTTGCTGGCATCACTTTAGTGGTCATGGTTCTTCAATGGTATGCTTGTC
TGGTAAGTGTTCAACGGTGTCTGAAAATAGAGTAATACATAATTCATACC
AAGCCCCGTTTTCAAAATATTGTTGTCAAAGTAAATCAGGGTTTGAGTAA
ATCATCCTTGGACAATGTGTGGCCTCCAGCAGTTTGCTAGAATGCGTAAA
TGGGTTTTTCGGTTTCGTAAGACTTGCGTGAACGTGGTGCACTTTTTGAT
AGCGTGAATTCATGAATATGCGCTATTTCTTTGTGCGAATGTGAATTTTC
TCTTTTTTTCACCGATTACATGCAACTTTTCCGGTTTTCAAATGTGTACC
CGACTTCCCGAAAAATTTCCCGATGTTTTGAGGAATCGGGTTTGCGTGAA
AGACGAGAAAAATTTGCGTGAGTTTGTGAGTTTCGAAAAAAAAGGTACAC
GAAAGGGTTAAATTTGGGTCCGCTTTAAGCCTCATTAGTATTGTGAGTGT
TTGTGATTTAAATGTTATTGCTTTTCATTTTCAGTGTCCTGAAAAATCCT
ACGTGTGAAGAACAAGGAAAAGGGAATTGAAGAAAGCAGTGATGAGTCAG
CAAATTTTGGTGCAGGGGTTCCAAAAAATGCCAAATTGAAGGACAATTGC
ACAAGAGATTAACTTGATTCTATTGCTAGGAAAACCAACAATATTGAAAC
ATTCCCAAAAGTTTTGTATTGATTTTTGAACCTCGGCTTTCAACAATATA
TAATCCAAGATCCTGATATAGTACATAAAACGTGTAAATAGAATATTCCA
TTGACTTTTTAAGAATCAGTAAAACTTGAAAAAAAATCTTGAAATTACTA
AAAATGAATTTGGTAAATTTATCTCTCTAAATATGTTTTCTCATTACTCA
GTACAAATTGAAATTTCAGGCATCATTTACTCTTGTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000605-exon-sc0000002-1575043694:1455074..1456586 | TCONS_00000605-exon-sc0000002-1575043694:1455074..1456586 | Clytia hemisphaerica | exon |
| TCONS_00000605-exon-sc0000002-1575043694:1454085..1454197 | TCONS_00000605-exon-sc0000002-1575043694:1454085..1454197 | Clytia hemisphaerica | exon |
| TCONS_00000605-exon-sc0000002-1575043694:1453197..1453602 | TCONS_00000605-exon-sc0000002-1575043694:1453197..1453602 | Clytia hemisphaerica | exon |
| TCONS_00000605-exon-sc0000002-1510915933:1455074..1456586 | TCONS_00000605-exon-sc0000002-1510915933:1455074..1456586 | Clytia hemisphaerica | exon |
| TCONS_00000605-exon-sc0000002-1510915933:1454085..1454197 | TCONS_00000605-exon-sc0000002-1510915933:1454085..1454197 | Clytia hemisphaerica | exon |
| TCONS_00000605-exon-sc0000002-1510915933:1453197..1453602 | TCONS_00000605-exon-sc0000002-1510915933:1453197..1453602 | Clytia hemisphaerica | exon |
| TCONS_00000605-exon-sc0000002-1491911889:1455074..1456586 | TCONS_00000605-exon-sc0000002-1491911889:1455074..1456586 | Clytia hemisphaerica | exon |
| TCONS_00000605-exon-sc0000002-1491911889:1454085..1454197 | TCONS_00000605-exon-sc0000002-1491911889:1454085..1454197 | Clytia hemisphaerica | exon |
| TCONS_00000605-exon-sc0000002-1491911889:1453197..1453602 | TCONS_00000605-exon-sc0000002-1491911889:1453197..1453602 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1453197..1456586 - |
Blast
The following BLAST results are available for this feature:
|
