TCONS_00000604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000604
Unique NameTCONS_00000604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000604 ID=TCONS_00000604|Name=TCONS_00000604|organism=Clytia hemisphaerica|type=transcript|length=1238bp
ccaCTATATTAATACTggacacgttttttttataagaatggtgtttttcc
aattcatcatgagaatattctcaactttttggtgaaaaacaTCTTGAACT
ATTCTTTCGGTTTTCTTGGGTTTGGAACCAAACCCAGCCAAAATCTagca
tgtaatacatacctgaagcaaaaatttggcatttttgtggaACCTTATTT
GCATTGCTGGGGAAAAACTGGCTATTTAATGGTgaaaaaatgctctaaaa
acgGTATTCTCTGGTTCAGTTGTCGAATTCAATAATTGtggtattcttac
catattctgaaatttttggcaaattttatcatgaatattcttataaagta
tatattCCTATTTAAAAAAGCATGTATTCACTTTACGTCTAATTAATCTT
GAAGTGACATTGTAATTACCTTGCAATTAATATTTCTGTTAATTGTGAAA
TATGAACATCTCCTAATTAGAAATGGCATAGATTGAATAATATATCTGCT
TGTAGAGGCCAGCTTGCTGTTTATAGGTGATAAAAATGGCGAAGTTCGTA
CTTGCTATTACTTTAATTTACCTAACAATCGTATCCATTGCTGATGGTCG
ACCTATTGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAA
ACAATCAGAATGCAAATCCAGCAATACTTACTATCATACCATCAACAACT
ACTGAACCATATACCACAGAGGATATTGGAGTGAGGACATCAAGTACGGA
TGAGAAAGTCATCATTGCAATCATCATCTTATTTGCTGGCATCACTTTAG
TGGTCATGGTTCTTCAATGGTATGCTTGTCTGtgtcCTGAAAAATCCTAC
GTGTGAAGAACAAGGAAAAGGGAATTGAAGAAAGCAGTGATGAGTCAGCA
AATTTTGGTGCAGGGGTtccaaaaaatgccaaattGAAGGACAATTGCAC
AAGAGATTAACTTGATTCTATTGCTAGGAAAACCAACAATATTGAAACAT
TCCCAAAAGTTTTGTATTGATTTTTGAACCTCGGCTTTCAACAATATATA
ATCCAAGATCCTGATATAGTACATAAAACGTGTAAATAGAATATTCCATT
GACTTTTTAAGAATCagtaaaacttgaaaaaaaatcttgaaattactaaa
aatgAATTTGGTAAATTTATCTCTCTAAATATGTTTTCTCATTACTCAGT
ACAAATTGAAATTTCAGGCATCATTTACTCTTGTTACC
Run BLAST on NCBI

protein sequence of TCONS_00000604-protein

>TCONS_00000604-protein ID=TCONS_00000604-protein|Name=TCONS_00000604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MAKFVLAITLIYLTIVSIADGRPIEKDALPRRSRRDVINNQNANPAILTI
IPSTTTEPYTTEDIGVRTSSTDEKVIIAIIILFAGITLVVMVLQWYACLC
PEKSYV
Run BLAST on NCBI

transcript from alignment at sc0000002:1453197..1456392-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000604 ID=TCONS_00000604|Name=TCONS_00000604|organism=Clytia hemisphaerica|type=transcript|length=3196bp|location=Sequence derived from alignment at sc0000002:1453197..1456392- (Clytia hemisphaerica)
CCACTATATTAATACTGGACACGTTTTTTTTATAAGAATGGTGTTTTTCC
AATTCATCATGAGAATATTCTCAACTTTTTGGTGAAAAACATCTTGAACT
ATTCTTTCGGTTTTCTTGGGTTTGGAACCAAACCCAGCCAAAATCTAGCA
TGTAATACATACCTGAAGCAAAAATTTGGCATTTTTGTGGAACCTTATTT
GCATTGCTGGGGAAAAACTGGCTATTTAATGGTGAAAAAATGCTCTAAAA
ACGGTATTCTCTGGTTCAGTTGTCGAATTCAATAATTGTGGTATTCTTAC
CATATTCTGAAATTTTTGGCAAATTTTATCATGAATATTCTTATAAAGTA
TATATTCCTATTTAAAAAAGCATGTATTCACTTTACGTCTAATTAATCTT
GAAGTGACATTGTAATTACCTTGCAATTAATATTTCTGTTAATTGTGAAA
TATGAACATCTCCTAATTAGAAATGGCATAGATTGAATAATATATCTGCT
TGTAGAGGCCAGCTTGCTGTTTATAGGTGATAAAAATGGCGAGTAAGTAA
AACCTTTTCTTTTTCTTTCTTTGCCATTGTGTTGTGTTTGGAAGCAAATC
AATCATTTCATCTAAGATGAGGTAGTTTTACTAGGCACTCTAGAGTATCA
TTATCTAAACAAGTGTTGGCAAAACTCTCTCTCAATTTTGAATCTCCCCT
TTTACGTCCGCCACTAAGAAAGCTTTTCAAAAAGTCTCATAAATCCTCAA
AATGTATCTCGTTTGTCACAGGGTATTGATGATTGATTTAAGACACCCGT
CAAGGCCGTTCCCCCAGCCTCGACACAAGCAAGGTTATGGAAGTTTTTTG
TATGCTCTTCAGTACTTTATTGCAGAGGGTCTAGAAAGGGTAAACAAAAT
TCTTTTTTAGAGTAGTTGGAGAGGTAATAAAATAACAAAAGTGTTTCTCA
CACTAAACACGTTTTAAAAGCCGTTAACTTTTTTAAAGGGAGCTTCAAAC
TGTTTTTGAAATAGATCACGTTGGTCAAAATATGGCAATTTTCTCCAAAA
TTTTCGAAAAATGACACTTCTCAATTAAGCGCAGAAAAGTACAACATAAA
ATCGCAAATTTATAAAATTCATTCTTTCCATTATCATCATAGAGTTCGTA
CTTGCTATTACTTTAATTTACCTAACAATCGTATCCATTGCTGATGGTCG
ACCTATTGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAA
ACAATCAGAATGCAAATCCAGCAATACTTACTATCATACCATCAACAACT
ACTGAACCATATACCACAGGTTTGATGCACCTATTCGCCCCTGTTTCATT
GTTACCTGCTTTAAAGCCTTTATAAGTATTATTAGTAGGGGGCAAACCCT
TCAGGCACAGGTCCTAAGCCCCCCTACTATAAGGCTGAAATCTGTCCAAA
ACCTAAGAACCAACCAAGAACCAAACGAGCCTTAGAATTTAGAAATTGCT
AAGAAAATACTAAAAAGTTCCTTTTGAAAGCTCTTTAGTAAGGAAAATGA
GAACGAATTAAAGACATTTTAAGCCTAAAAATTAGGAAAAAATAGGAACA
GCAACTTAAGGCTTAGTTTTGGGAGAATGACGGATCGGAGAGGGTATTTA
ATCGGAATGAAAACTTCCCGATTTATGGTCAACCTCGTCTCCGTGTATGC
CAGGCTTTATTTACGTTACTGATGGGCCAGAGAATGTCTGGCGCCACCAA
TAAGTACTGTTACGCAGAGAATGAGGTCGATGAGGTTACCTTTTCTCACC
GGGAATATTATGGGAGTTTTTTACAACCTGGGGCCACGGCTTCACTTTGA
AAGTGGCAGGGCTATGGTTTAGTGTCTAAAGACGTTCCACCATGGTCGGC
GCTGACAGGAGAAATTTTTGAAAATTAGTTCTTCTACACTGCCTAAAACA
GGTCTTTTTCAAGGTTTATACGCAGAATTTAGCTGAATCAGTGAATTTTC
TTTTTGCTTTGAAAAAATGTGGTCGGGCCAATGCCCAGGTGGACCCCCCT
ACCGTGGCCCCTGCAACACCTTCTAATGGGGAAGCAGTCCANTGCCCAGG
TGGACCCCCCTATCGTGGCCCCTGCAACACCTTCTAATGGGGAAGCAGTC
CAACATGTTAAGCGAACGTATTTTACTTTTTCCGTACCTTTTCAGAGGAT
ATTGGAGTGAGGACATCAAGTACGGATGAGAAAGTCATCATTGCAATCAT
CATCTTATTTGCTGGCATCACTTTAGTGGTCATGGTTCTTCAATGGTATG
CTTGTCTGGTAAGTGTTCAACGGTGTCTGAAAATAGAGTAATACATAATT
CATACCAAGCCCCGTTTTCAAAATATTGTTGTCAAAGTAAATCAGGGTTT
GAGTAAATCATCCTTGGACAATGTGTGGCCTCCAGCAGTTTGCTAGAATG
CGTAAATGGGTTTTTCGGTTTCGTAAGACTTGCGTGAACGTGGTGCACTT
TTTGATAGCGTGAATTCATGAATATGCGCTATTTCTTTGTGCGAATGTGA
ATTTTCTCTTTTTTTCACCGATTACATGCAACTTTTCCGGTTTTCAAATG
TGTACCCGACTTCCCGAAAAATTTCCCGATGTTTTGAGGAATCGGGTTTG
CGTGAAAGACGAGAAAAATTTGCGTGAGTTTGTGAGTTTCGAAAAAAAAG
GTACACGAAAGGGTTAAATTTGGGTCCGCTTTAAGCCTCATTAGTATTGT
GAGTGTTTGTGATTTAAATGTTATTGCTTTTCATTTTCAGTGTCCTGAAA
AATCCTACGTGTGAAGAACAAGGAAAAGGGAATTGAAGAAAGCAGTGATG
AGTCAGCAAATTTTGGTGCAGGGGTTCCAAAAAATGCCAAATTGAAGGAC
AATTGCACAAGAGATTAACTTGATTCTATTGCTAGGAAAACCAACAATAT
TGAAACATTCCCAAAAGTTTTGTATTGATTTTTGAACCTCGGCTTTCAAC
AATATATAATCCAAGATCCTGATATAGTACATAAAACGTGTAAATAGAAT
ATTCCATTGACTTTTTAAGAATCAGTAAAACTTGAAAAAAAATCTTGAAA
TTACTAAAAATGAATTTGGTAAATTTATCTCTCTAAATATGTTTTCTCAT
TACTCAGTACAAATTGAAATTTCAGGCATCATTTACTCTTGTTACC

Coding sequence (CDS) from alignment at sc0000002:1453197..1456392-

>TCONS_00000604 ID=TCONS_00000604|Name=TCONS_00000604|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0000002:1453197..1456392- (Clytia hemisphaerica)
TGTCCTGAAAAATCCTACGTGTGAAGGATATTGGAGTGAGGACATCAAGT
ACGGATGAGAAAGTCATCATTGCAATCATCATCTTATTTGCTGGCATCAC
TTTAGTGGTCATGGTTCTTCAATGGTATGCTTGTCTGAGTTCGTACTTGC
TATTACTTTAATTTACCTAACAATCGTATCCATTGCTGATGGTCGACCTA
TTGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAAACAAT
CAGAATGCAAATCCAGCAATACTTACTATCATACCATCAACAACTACTGA
ACCATATACCACAGATGGCGATGTCCTGAAAAATCCTACGTGTGAAGGAT
ATTGGAGTGAGGACATCAAGTACGGATGAGAAAGTCATCATTGCAATCAT
CATCTTATTTGCTGGCATCACTTTAGTGGTCATGGTTCTTCAATGGTATG
CTTGTCTGAGTTCGTACTTGCTATTACTTTAATTTACCTAACAATCGTAT
CCATTGCTGATGGTCGACCTATTGAAAAAGATGCTCTACCAAGAAGAAGC
CGAAGGGATGTCATAAACAATCAGAATGCAAATCCAGCAATACTTACTAT
CATACCATCAACAACTACTGAACCATATACCACAGATGGCGATGTCCTGA
AAAATCCTACGTGTGAAGGATATTGGAGTGAGGACATCAAGTACGGATGA
GAAAGTCATCATTGCAATCATCATCTTATTTGCTGGCATCACTTTAGTGG
TCATGGTTCTTCAATGGTATGCTTGTCTGAGTTCGTACTTGCTATTACTT
TAATTTACCTAACAATCGTATCCATTGCTGATGGTCGACCTATTGAAAAA
GATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAAACAATCAGAATGC
AAATCCAGCAATACTTACTATCATACCATCAACAACTACTGAACCATATA
CCACAGATGGCGATGTCCTGAAAAATCCTACGTGTGAAGGATATTGGAGT
GAGGACATCAAGTACGGATGAGAAAGTCATCATTGCAATCATCATCTTAT
TTGCTGGCATCACTTTAGTGGTCATGGTTCTTCAATGGTATGCTTGTCTG
AGTTCGTACTTGCTATTACTTTAATTTACCTAACAATCGTATCCATTGCT
GATGGTCGACCTATTGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGA
TGTCATAAACAATCAGAATGCAAATCCAGCAATACTTACTATCATACCAT
CAACAACTACTGAACCATATACCACAGATGGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000355XLOC_000355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000604-exon-sc0000002-1575043694:1455851..1456392TCONS_00000604-exon-sc0000002-1575043694:1455851..1456392Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1575043694:1455074..1455250TCONS_00000604-exon-sc0000002-1575043694:1455074..1455250Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1575043694:1454085..1454197TCONS_00000604-exon-sc0000002-1575043694:1454085..1454197Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1575043694:1453197..1453602TCONS_00000604-exon-sc0000002-1575043694:1453197..1453602Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1510915933:1455851..1456392TCONS_00000604-exon-sc0000002-1510915933:1455851..1456392Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1510915933:1455074..1455250TCONS_00000604-exon-sc0000002-1510915933:1455074..1455250Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1510915933:1454085..1454197TCONS_00000604-exon-sc0000002-1510915933:1454085..1454197Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1510915933:1453197..1453602TCONS_00000604-exon-sc0000002-1510915933:1453197..1453602Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1491911889:1455851..1456392TCONS_00000604-exon-sc0000002-1491911889:1455851..1456392Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1491911889:1455074..1455250TCONS_00000604-exon-sc0000002-1491911889:1455074..1455250Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1491911889:1454085..1454197TCONS_00000604-exon-sc0000002-1491911889:1454085..1454197Clytia hemisphaericaexon
TCONS_00000604-exon-sc0000002-1491911889:1453197..1453602TCONS_00000604-exon-sc0000002-1491911889:1453197..1453602Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000604-proteinTCONS_00000604-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1453197..1456392 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.203288	0.0817796	0.00295849	0.0921261	1.42342	1.2306	2.89656	2.4692	4.25968	2.34185	3.68825	2.42609	11.2793	13.6113	10.4182	6.82228	1.65613	1.51001	1.03203	0.557056	0.886826	0.327192	0.219937	0.287686	0.162798	0.486472	1.64064	1.22653	0.0765355	0.151577
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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