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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000604 ID=TCONS_00000604|Name=TCONS_00000604|organism=Clytia hemisphaerica|type=transcript|length=1238bp ccaCTATATTAATACTggacacgttttttttataagaatggtgtttttcc aattcatcatgagaatattctcaactttttggtgaaaaacaTCTTGAACT ATTCTTTCGGTTTTCTTGGGTTTGGAACCAAACCCAGCCAAAATCTagca tgtaatacatacctgaagcaaaaatttggcatttttgtggaACCTTATTT GCATTGCTGGGGAAAAACTGGCTATTTAATGGTgaaaaaatgctctaaaa acgGTATTCTCTGGTTCAGTTGTCGAATTCAATAATTGtggtattcttac catattctgaaatttttggcaaattttatcatgaatattcttataaagta tatattCCTATTTAAAAAAGCATGTATTCACTTTACGTCTAATTAATCTT GAAGTGACATTGTAATTACCTTGCAATTAATATTTCTGTTAATTGTGAAA TATGAACATCTCCTAATTAGAAATGGCATAGATTGAATAATATATCTGCT TGTAGAGGCCAGCTTGCTGTTTATAGGTGATAAAAATGGCGAAGTTCGTA CTTGCTATTACTTTAATTTACCTAACAATCGTATCCATTGCTGATGGTCG ACCTATTGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAA ACAATCAGAATGCAAATCCAGCAATACTTACTATCATACCATCAACAACT ACTGAACCATATACCACAGAGGATATTGGAGTGAGGACATCAAGTACGGA TGAGAAAGTCATCATTGCAATCATCATCTTATTTGCTGGCATCACTTTAG TGGTCATGGTTCTTCAATGGTATGCTTGTCTGtgtcCTGAAAAATCCTAC GTGTGAAGAACAAGGAAAAGGGAATTGAAGAAAGCAGTGATGAGTCAGCA AATTTTGGTGCAGGGGTtccaaaaaatgccaaattGAAGGACAATTGCAC AAGAGATTAACTTGATTCTATTGCTAGGAAAACCAACAATATTGAAACAT TCCCAAAAGTTTTGTATTGATTTTTGAACCTCGGCTTTCAACAATATATA ATCCAAGATCCTGATATAGTACATAAAACGTGTAAATAGAATATTCCATT GACTTTTTAAGAATCagtaaaacttgaaaaaaaatcttgaaattactaaa aatgAATTTGGTAAATTTATCTCTCTAAATATGTTTTCTCATTACTCAGT ACAAATTGAAATTTCAGGCATCATTTACTCTTGTTACC Run BLAST on NCBI protein sequence of TCONS_00000604-protein >TCONS_00000604-protein ID=TCONS_00000604-protein|Name=TCONS_00000604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MAKFVLAITLIYLTIVSIADGRPIEKDALPRRSRRDVINNQNANPAILTI IPSTTTEPYTTEDIGVRTSSTDEKVIIAIIILFAGITLVVMVLQWYACLC PEKSYV Run BLAST on NCBI transcript from alignment at sc0000002:1453197..1456392- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000604 ID=TCONS_00000604|Name=TCONS_00000604|organism=Clytia hemisphaerica|type=transcript|length=3196bp|location=Sequence derived from alignment at sc0000002:1453197..1456392- (Clytia hemisphaerica) CCACTATATTAATACTGGACACGTTTTTTTTATAAGAATGGTGTTTTTCC
AATTCATCATGAGAATATTCTCAACTTTTTGGTGAAAAACATCTTGAACT
ATTCTTTCGGTTTTCTTGGGTTTGGAACCAAACCCAGCCAAAATCTAGCA
TGTAATACATACCTGAAGCAAAAATTTGGCATTTTTGTGGAACCTTATTT
GCATTGCTGGGGAAAAACTGGCTATTTAATGGTGAAAAAATGCTCTAAAA
ACGGTATTCTCTGGTTCAGTTGTCGAATTCAATAATTGTGGTATTCTTAC
CATATTCTGAAATTTTTGGCAAATTTTATCATGAATATTCTTATAAAGTA
TATATTCCTATTTAAAAAAGCATGTATTCACTTTACGTCTAATTAATCTT
GAAGTGACATTGTAATTACCTTGCAATTAATATTTCTGTTAATTGTGAAA
TATGAACATCTCCTAATTAGAAATGGCATAGATTGAATAATATATCTGCT
TGTAGAGGCCAGCTTGCTGTTTATAGGTGATAAAAATGGCGAGTAAGTAA
AACCTTTTCTTTTTCTTTCTTTGCCATTGTGTTGTGTTTGGAAGCAAATC
AATCATTTCATCTAAGATGAGGTAGTTTTACTAGGCACTCTAGAGTATCA
TTATCTAAACAAGTGTTGGCAAAACTCTCTCTCAATTTTGAATCTCCCCT
TTTACGTCCGCCACTAAGAAAGCTTTTCAAAAAGTCTCATAAATCCTCAA
AATGTATCTCGTTTGTCACAGGGTATTGATGATTGATTTAAGACACCCGT
CAAGGCCGTTCCCCCAGCCTCGACACAAGCAAGGTTATGGAAGTTTTTTG
TATGCTCTTCAGTACTTTATTGCAGAGGGTCTAGAAAGGGTAAACAAAAT
TCTTTTTTAGAGTAGTTGGAGAGGTAATAAAATAACAAAAGTGTTTCTCA
CACTAAACACGTTTTAAAAGCCGTTAACTTTTTTAAAGGGAGCTTCAAAC
TGTTTTTGAAATAGATCACGTTGGTCAAAATATGGCAATTTTCTCCAAAA
TTTTCGAAAAATGACACTTCTCAATTAAGCGCAGAAAAGTACAACATAAA
ATCGCAAATTTATAAAATTCATTCTTTCCATTATCATCATAGAGTTCGTA
CTTGCTATTACTTTAATTTACCTAACAATCGTATCCATTGCTGATGGTCG
ACCTATTGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAA
ACAATCAGAATGCAAATCCAGCAATACTTACTATCATACCATCAACAACT
ACTGAACCATATACCACAGGTTTGATGCACCTATTCGCCCCTGTTTCATT
GTTACCTGCTTTAAAGCCTTTATAAGTATTATTAGTAGGGGGCAAACCCT
TCAGGCACAGGTCCTAAGCCCCCCTACTATAAGGCTGAAATCTGTCCAAA
ACCTAAGAACCAACCAAGAACCAAACGAGCCTTAGAATTTAGAAATTGCT
AAGAAAATACTAAAAAGTTCCTTTTGAAAGCTCTTTAGTAAGGAAAATGA
GAACGAATTAAAGACATTTTAAGCCTAAAAATTAGGAAAAAATAGGAACA
GCAACTTAAGGCTTAGTTTTGGGAGAATGACGGATCGGAGAGGGTATTTA
ATCGGAATGAAAACTTCCCGATTTATGGTCAACCTCGTCTCCGTGTATGC
CAGGCTTTATTTACGTTACTGATGGGCCAGAGAATGTCTGGCGCCACCAA
TAAGTACTGTTACGCAGAGAATGAGGTCGATGAGGTTACCTTTTCTCACC
GGGAATATTATGGGAGTTTTTTACAACCTGGGGCCACGGCTTCACTTTGA
AAGTGGCAGGGCTATGGTTTAGTGTCTAAAGACGTTCCACCATGGTCGGC
GCTGACAGGAGAAATTTTTGAAAATTAGTTCTTCTACACTGCCTAAAACA
GGTCTTTTTCAAGGTTTATACGCAGAATTTAGCTGAATCAGTGAATTTTC
TTTTTGCTTTGAAAAAATGTGGTCGGGCCAATGCCCAGGTGGACCCCCCT
ACCGTGGCCCCTGCAACACCTTCTAATGGGGAAGCAGTCCANTGCCCAGG
TGGACCCCCCTATCGTGGCCCCTGCAACACCTTCTAATGGGGAAGCAGTC
CAACATGTTAAGCGAACGTATTTTACTTTTTCCGTACCTTTTCAGAGGAT
ATTGGAGTGAGGACATCAAGTACGGATGAGAAAGTCATCATTGCAATCAT
CATCTTATTTGCTGGCATCACTTTAGTGGTCATGGTTCTTCAATGGTATG
CTTGTCTGGTAAGTGTTCAACGGTGTCTGAAAATAGAGTAATACATAATT
CATACCAAGCCCCGTTTTCAAAATATTGTTGTCAAAGTAAATCAGGGTTT
GAGTAAATCATCCTTGGACAATGTGTGGCCTCCAGCAGTTTGCTAGAATG
CGTAAATGGGTTTTTCGGTTTCGTAAGACTTGCGTGAACGTGGTGCACTT
TTTGATAGCGTGAATTCATGAATATGCGCTATTTCTTTGTGCGAATGTGA
ATTTTCTCTTTTTTTCACCGATTACATGCAACTTTTCCGGTTTTCAAATG
TGTACCCGACTTCCCGAAAAATTTCCCGATGTTTTGAGGAATCGGGTTTG
CGTGAAAGACGAGAAAAATTTGCGTGAGTTTGTGAGTTTCGAAAAAAAAG
GTACACGAAAGGGTTAAATTTGGGTCCGCTTTAAGCCTCATTAGTATTGT
GAGTGTTTGTGATTTAAATGTTATTGCTTTTCATTTTCAGTGTCCTGAAA
AATCCTACGTGTGAAGAACAAGGAAAAGGGAATTGAAGAAAGCAGTGATG
AGTCAGCAAATTTTGGTGCAGGGGTTCCAAAAAATGCCAAATTGAAGGAC
AATTGCACAAGAGATTAACTTGATTCTATTGCTAGGAAAACCAACAATAT
TGAAACATTCCCAAAAGTTTTGTATTGATTTTTGAACCTCGGCTTTCAAC
AATATATAATCCAAGATCCTGATATAGTACATAAAACGTGTAAATAGAAT
ATTCCATTGACTTTTTAAGAATCAGTAAAACTTGAAAAAAAATCTTGAAA
TTACTAAAAATGAATTTGGTAAATTTATCTCTCTAAATATGTTTTCTCAT
TACTCAGTACAAATTGAAATTTCAGGCATCATTTACTCTTGTTACC Coding sequence (CDS) from alignment at sc0000002:1453197..1456392- >TCONS_00000604 ID=TCONS_00000604|Name=TCONS_00000604|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0000002:1453197..1456392- (Clytia hemisphaerica) TGTCCTGAAAAATCCTACGTGTGAAGGATATTGGAGTGAGGACATCAAGT ACGGATGAGAAAGTCATCATTGCAATCATCATCTTATTTGCTGGCATCAC TTTAGTGGTCATGGTTCTTCAATGGTATGCTTGTCTGAGTTCGTACTTGC TATTACTTTAATTTACCTAACAATCGTATCCATTGCTGATGGTCGACCTA TTGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAAACAAT CAGAATGCAAATCCAGCAATACTTACTATCATACCATCAACAACTACTGA ACCATATACCACAGATGGCGATGTCCTGAAAAATCCTACGTGTGAAGGAT ATTGGAGTGAGGACATCAAGTACGGATGAGAAAGTCATCATTGCAATCAT CATCTTATTTGCTGGCATCACTTTAGTGGTCATGGTTCTTCAATGGTATG CTTGTCTGAGTTCGTACTTGCTATTACTTTAATTTACCTAACAATCGTAT CCATTGCTGATGGTCGACCTATTGAAAAAGATGCTCTACCAAGAAGAAGC CGAAGGGATGTCATAAACAATCAGAATGCAAATCCAGCAATACTTACTAT CATACCATCAACAACTACTGAACCATATACCACAGATGGCGATGTCCTGA AAAATCCTACGTGTGAAGGATATTGGAGTGAGGACATCAAGTACGGATGA GAAAGTCATCATTGCAATCATCATCTTATTTGCTGGCATCACTTTAGTGG TCATGGTTCTTCAATGGTATGCTTGTCTGAGTTCGTACTTGCTATTACTT TAATTTACCTAACAATCGTATCCATTGCTGATGGTCGACCTATTGAAAAA GATGCTCTACCAAGAAGAAGCCGAAGGGATGTCATAAACAATCAGAATGC AAATCCAGCAATACTTACTATCATACCATCAACAACTACTGAACCATATA CCACAGATGGCGATGTCCTGAAAAATCCTACGTGTGAAGGATATTGGAGT GAGGACATCAAGTACGGATGAGAAAGTCATCATTGCAATCATCATCTTAT TTGCTGGCATCACTTTAGTGGTCATGGTTCTTCAATGGTATGCTTGTCTG AGTTCGTACTTGCTATTACTTTAATTTACCTAACAATCGTATCCATTGCT GATGGTCGACCTATTGAAAAAGATGCTCTACCAAGAAGAAGCCGAAGGGA TGTCATAAACAATCAGAATGCAAATCCAGCAATACTTACTATCATACCAT CAACAACTACTGAACCATATACCACAGATGGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000604-exon-sc0000002-1575043694:1455851..1456392 | TCONS_00000604-exon-sc0000002-1575043694:1455851..1456392 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1575043694:1455074..1455250 | TCONS_00000604-exon-sc0000002-1575043694:1455074..1455250 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1575043694:1454085..1454197 | TCONS_00000604-exon-sc0000002-1575043694:1454085..1454197 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1575043694:1453197..1453602 | TCONS_00000604-exon-sc0000002-1575043694:1453197..1453602 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1510915933:1455851..1456392 | TCONS_00000604-exon-sc0000002-1510915933:1455851..1456392 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1510915933:1455074..1455250 | TCONS_00000604-exon-sc0000002-1510915933:1455074..1455250 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1510915933:1454085..1454197 | TCONS_00000604-exon-sc0000002-1510915933:1454085..1454197 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1510915933:1453197..1453602 | TCONS_00000604-exon-sc0000002-1510915933:1453197..1453602 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1491911889:1455851..1456392 | TCONS_00000604-exon-sc0000002-1491911889:1455851..1456392 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1491911889:1455074..1455250 | TCONS_00000604-exon-sc0000002-1491911889:1455074..1455250 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1491911889:1454085..1454197 | TCONS_00000604-exon-sc0000002-1491911889:1454085..1454197 | Clytia hemisphaerica | exon |
TCONS_00000604-exon-sc0000002-1491911889:1453197..1453602 | TCONS_00000604-exon-sc0000002-1491911889:1453197..1453602 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000002 | supercontig | sc0000002:1453197..1456392 - |
Blast
The following BLAST results are available for this feature:
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