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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000595 ID=TCONS_00000595|Name=TCONS_00000595|organism=Clytia hemisphaerica|type=transcript|length=3221bpRun BLAST on NCBI protein sequence of TCONS_00000595-protein >TCONS_00000595-protein ID=TCONS_00000595-protein|Name=TCONS_00000595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp MEAIKDTFTKSKKKKVKAVHQKVKVFRVHDPKMAVLMWGVTHSVSQLSHVRun BLAST on NCBI transcript from alignment at sc0000002:1319057..1336323- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000595 ID=TCONS_00000595|Name=TCONS_00000595|organism=Clytia hemisphaerica|type=transcript|length=17267bp|location=Sequence derived from alignment at sc0000002:1319057..1336323- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:1319057..1336323- >TCONS_00000595 ID=TCONS_00000595|Name=TCONS_00000595|organism=Clytia hemisphaerica|type=CDS|length=12540bp|location=Sequence derived from alignment at sc0000002:1319057..1336323- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000595 vs. Swiss-Prot (Human)
Match: PI42B (Phosphatidylinositol 5-phosphate 4-kinase type-2 beta OS=Homo sapiens GN=PIP4K2B PE=1 SV=1) HSP 1 Score: 319.701 bits (818), Expect = 6.122e-98 Identity = 195/393 (49.62%), Postives = 253/393 (64.38%), Query Frame = 2
Query: 608 FRVHDPKMAVLMWGVTHSVSQLSHVPQQVMLLKDDFKAYSKIKIDNHFYNKEHMPGHFKFKEYMPLVFRNLRERFAIDEKLYAASFL-IQPQLSKAQGNSGAKFLLTTDKRFYIKTLQSVEVEMMHHIMPSYHRYIVESHSDTLLPQYLGMYRTTLDNKEYYYLVVRSVFSCKKKVQKKYDLKGSRIDREAKDSEKDKESVTFKDNDFTKENARIFIGAEQKEKFKDRLTKDVNFLSGLNIMDYSLLVGIHDTEHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASPTTDGETSAATPETLAARRQRYSRTESVSSSDGYESEYFALPSSDESL-HSVYYMGIIDVLTYYXXXXXXXXXXXXXXXXXXXEISTVKPHLYATRFLEFMDSVM 1780
FR +P ++VLMWGV H++++LS+VP VML+ DDFKAYSKIK+DNH +NKE++P FKFKEY P+VFRNLRERF ID++ Y S P S +QG G +FL T D+RF IKT+ S +V MH+I+ YH++IVE H +TLLPQ+LGMYR T+D E Y +V R+VFS + V +KYDLKGS + REA D EK K+ TFKDNDF E ++ +G E K+ F ++L +DV FL+ L IMDYSLLVGIHD + + E E E+ E + G P +P L + + + E S D Y A+ S + S VY+M IID+LT Y KKAAHAAKTVKHGAGAEISTV P Y+ RF EFM +++
Sbjct: 36 FRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPD--------SPGNLLSFPRFFGPGEFDPSVDVY-----AMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFMSNIL 415 The following BLAST results are available for this feature:
BLAST of TCONS_00000595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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