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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000590 ID=TCONS_00000590|Name=TCONS_00000590|organism=Clytia hemisphaerica|type=transcript|length=1942bp
GTTTTAGATAAAACATATAGAGCatacaaaaagttataaaaaagttACAG
CATGGATAAATTCGTGATTAGAACACCACGTGATCAGGTCAATgacaaac
aaaatggtagacctCAGAAGCCAAGGAAGAAACAGACCACTATTGAGTCA
TTATCGAGGGTTGTTATCGTGGAACAGGTGCATCGTCAGaaagaaatcct
gaaaaacgCAGAAACCACACCACAATTTCTCATCTCAACACTAAAAGACC
TGCACAAAGCTATCCCTTCAAAAAGTGTTCTACTAGAGACGAAAGTTGGT
CACGTGGTCAATAAATTACGTCATCATTCCGATCCAGAGGTCAAAGAACA
GGCGCGTTTACTACTTAAGAAATGGAAGAAGTTTTATAGAGAGATCAATG
CACGCCAACCAATAGATGTACGGTCTGACTTGAAGACGGAAAAGTTCCGA
ACAAAAGCAAAACAGCTTTTAAGGAAAGCAATCGGCATTAAAGATGACCA
CGCTATAGCTTTGTCGATCGAGAAAACGATATACCGCGCTGAGAAATCGG
TCAACACGCCAAAATATCGGAGGCTGATACGAACTATATGCATCAAAGTA
ACTAATGACTCGCAGACCAAGGAACAACTCAAAAACGGCAAACTTTCTAC
TGTTTCGTTGATTAAAATGATTGAAAGTTCAGTGACTTGAGGTTTGACGA
ATGAAAACGGTTTTCAGTTTGAGAGatataaaatacaaaaatgtcaGCGC
TTTTATCCTTGATATTTTACACGTGGCTAGGATATTGGTCATACCGTGTC
ATTAAATTCGTCTTGTTTATGATCACGTGTCATGTTCTACCTTCTTTTGG
TATTTATAATGACCTCAAGAAGTATGGTCAATGGGCTATCATTACTGGCG
CTACTGATGGTATTGGTAAGGCTTATGCTGTGGAGCTCGCCAAGCAGAAA
TTCAACATCGTCTTGATCAGCCGAACGGAAGAGAAATTACAACGAGTGGC
TGAGGAGATTAAAAATGCTCATGGTGTCGACACCAAATatattgtttttg
atttttctacacCTGAGGGTTATGAAGAACGTATTGGGAATGTGATCTCA
GATCTGGATGTTGGAGTTTTGGTCAATAACGTTGGTATGTCCAGTAAGTG
GGATCGCTTGTATGATGAGTTGGAGATGGCTGAACATATCCGTGTCATGC
ATACCAACACCTTTGGTGAAATGCATATGACGTATATGCTGACGAAGAAA
ATGATTCAACAAAAACGTGGTATTATGATTCACATTTCCAGCTTCTTTGG
TTATTATCCGATCGGTTTAATAAGTGTTTATTCACCTACTAAAGCCTTCG
TCAACTCTTTCGTCCAGAATCTCCAAGCTGAAACTAAACACTGCAAAGAC
GTCCATCATCAATTAGTGACGCCCTTCTTTGTTGCCACAAATATGACCAA
AGGGAGTGTTAAAGTCACCAGAGTTACCCCAGATGCTGCCACCTTTGCTG
GCGCAGCTTTACGCACCGTTGGCTTAACGCCGCACACTTTTGGGTACTGG
ACTCATGATATTCTTGGGTCAATCTTAATGACCTTTCCACCTTTTGTTTT
TGGTAGATTACCGTTtgtcaaaagctttcaaaagtATTGTAAAAACAGAC
GCTTAAAGACCCTCGAGAAAAGCGAGTGAGAAAAACATTAGGTTGGTTTC
ATAATTTTGATTATTGCTTTGTTTTTGCTACCCATTTATATCGTAACTTT
TACAGTGCGTAGAGACCCCTAGATATCCAACTTCTCAGATAATCTTCCtg
tcatttttgtaaataataTTAACCTCTGGGTATCGTATTTTGAAccaggg
gggggcacgcagttactacaagacagtatgacacttactaccgtggtggt
actgtattcagaagttatgaaaacagttactacacagtgtag Run BLAST on NCBI protein sequence of TCONS_00000590-protein >TCONS_00000590-protein ID=TCONS_00000590-protein|Name=TCONS_00000590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MSALLSLIFYTWLGYWSYRVIKFVLFMITCHVLPSFGIYNDLKKYGQWAI
ITGATDGIGKAYAVELAKQKFNIVLISRTEEKLQRVAEEIKNAHGVDTKY
IVFDFSTPEGYEERIGNVISDLDVGVLVNNVGMSSKWDRLYDELEMAEHI
RVMHTNTFGEMHMTYMLTKKMIQQKRGIMIHISSFFGYYPIGLISVYSPT
KAFVNSFVQNLQAETKHCKDVHHQLVTPFFVATNMTKGSVKVTRVTPDAA
TFAGAALRTVGLTPHTFGYWTHDILGSILMTFPPFVFGRLPFVKSFQKYC
KNRRLKTLEKSE Run BLAST on NCBI transcript from alignment at sc0000002:1197968..1202743- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000590 ID=TCONS_00000590|Name=TCONS_00000590|organism=Clytia hemisphaerica|type=transcript|length=4776bp|location=Sequence derived from alignment at sc0000002:1197968..1202743- (Clytia hemisphaerica)
GTTTTAGATAAAACATATAGAGCATACAAAAAGTTATAAAAAAGTTACAG
CATGGATAAATTCGTGATTAGAACACCACGTGATCAGGTCAATGACAAAC
AAAATGGTAGACCTCAGAAGCCAAGGAAGAAACAGACCACTATTGAGTCA
TTATCGGTGAGCAATTGAATTTAATGCACTGCACAATGGTAAAGTACACA
GGATTTTTCATTGAAACTTCACACCCCCTTCTCACTTTTCACAGACCCGG
TAAGTTTTTTTCAGCCAGTGGGAGTAGAAATATCCGACAGGGTCAACTTT
TGGTCATTCCAAGAAACCATTTTTTAGGGTTTGTTTTAAAAAGTAATTGA
AACTTTGAATCTGATAGCATCCACAATCCAGGTAGTCAATAGATGGTTTT
TTATGTTTTGTTTTTAAGTTACGTAACTTCTGCAATTATGAAAGCAAACG
TTCGATTTGCGAATGTATCCTCTACATGTTCGAATGTTTGCTTCCATAAT
GGCTGAAATTACGTAAGATAGCCAAACATGAAAAACCTCTATACTGTATT
TACAATCGAAATCAAATCTTTTTAGAGGGTTGTTATCGTGGAACAGGTGC
ATCGTCAGAAAGAAATCCTGAAAAACGCAGAAACCACACCACAATTTCTC
ATCTCAACACTAAAAGACCTGCACAAAGCTATCCCTTCAAAAAGTGTTCT
ACTAGAGACGAAAGTTGGTCACGTGGTCAATAAATTACGTCATCATTCCG
ATCCAGAGGTCAAAGAACAGGCGCGTTTACTACTTAAGAAATGGAAGAAG
TTTTATAGAGAGATCAATGCACGCCAACCAATAGATGTACGGTCTGACTT
GAAGACGGAAAAGTTCCGAACAAAAGCAAAACAGCTTTTAAGGAAAGCAA
TCGGCATTAAAGTAAGTCGTATTTGATTTCTTTATTATCCTTTTTGCTGG
ACAAGTTTTTAAAAATCCTTCATGTGCAGATTGAACAGATTTCCCTTCTT
TTATAGGAAGTTGTCGTTTTTGTTTAGGTTTCAGTTTTCGTTATTTTTCT
TTGTTCAGAATGGCCCTTCATGGAATTAATTCTTCAGATGCTTAAAAGCT
TTTGAATTTCGGAGAATGCCACTTTAAAACAAATGTTATTGATTATTACC
CGCATCTGCATTCTTTGTCCTTAGCAGTAATAAATAGCCCCTGTTTTTTT
AGATCATTGGATTATGGAGTCTCCATTTCTAACGCAAACGTGTCTTCAAC
TCGAACAAGTTGATAGACCCTTCAAATTAGCAAACTCTATAAACCAGTCT
CAAAAACTGGGACAAATTTGTGTTCCCCGTGCGTGTTCTAATTCTAGAAA
TTCCACTGTATCTATGCTTGTTCTTATACTTTTAAATAACTTTAGTTTGG
GCAAAAATGAAAAAATGTAGTGTTTCTGGAAACCGGCCGGGTGAAAAAAA
ATAATTTTCTGACCCGGCCGCAGACTACATTAGTAGTTGATACATATTCA
AGGCGTACATAAAAGTTATCTTTAAAGTTCAATGATCTTAAGTTATCAAA
AATAGCAACAAAAAAAATTTTTCGGCCGGCCCCATGAAAGCTTTTTTCCT
TAACCCGCATTCCGGAAACACTACATTTTTTTATTTTCACCTTCCCTGTA
ATTTTAAAATCACAAAATGCAGACCCTAAAAAGGACATATTATTGACCTA
GGCCTTTTTCCTTCGAAGTATTTCATTATTTGATTGAAATAATAATTTTA
GAAACTTGCAAACAATCTCATTTCCAAAAGGGTTTTTTGAAATAATTTTT
GTGAACATGGATTCTAATTAACATCATTCAAAAATTAAGTAACTTTACGT
CTCTTTCATTAGCAAGGGAATGTTACAAAATTTCTTAGCAATTAAAATCA
AATGTATATAACGATTGAAAATAGAAAAATTCCATTGTTCTCTAAAAATG
TTAAAAATGTGAAAACCGCCTATACAAAAACGGCGAAAATATAAAGCTGC
AACCATCTTTTTTTTGCGTTTGGAAATGAATTTTGATTTTCTTGAACAAA
ATCTTCCGAAAATGGATTAATATTACAGGAAGATCTTGTAATATAATCTG
ATTGCAAACTTGCTGGATATATACCACACCTCGGGTGAAAGTTTATAAAA
AATTGAGCTCATAAAAACTTCAAGTCAGCTTATAGACTACGAATGCGTAG
GAGTAATAAGTAAATGAAGAAGTTTTTGGAAAAGTTGTTACATGATTCTT
TCGAAATACAGATAGAATAGCAAGATTTTTTTAGAACAGAGTTTATGTTT
TCTGAATGAAGTTTTTAAAAGCCATCAAACTTTCGATGATAAGCATATAA
TTAGGACAATTAAATGGGATTTTATCTTTTTTGACTACACATGTTATCAG
CAGTAATAGATTAGCCGACGAATTTTCATGTTTTAACTTTTAGTTTTTTT
CATATATATTTGTTCGTTAGGATGACCACGCTATAGCTTTGTCGATCGAG
AAAACGATATACCGCGCTGAGAAATCGGTCAACACGCCAAAATATCGGAG
GCTGATACGAACTATATGCATCAAAGTAACTAATGACTCGCAGACCAAGG
AACAACTCAAAAACGGCAAACTTTCTACTGTTTCGTTGATTAAAATGATT
GAAAGTTCAGTGACTTGAGGTTTGACGAATGAAAACGGTTTTCAGTTTGA
GAGGTTTGTATTGCATGAAAATTTCATTATTTTGGAAGACCTTTGGTAAA
GCTGTACCTTTAGCCTTTAACCATTGAACTTAAAGAGGATTCTCAATCGC
GGCTCGTTTTTTAACAATATTAAAAATTGGTTTGCTTGTATATTATCTGT
GTACATAGTTGTTTTTATTCAAACCCCAAGGAAAATGAAATTTTTACAGA
AACATTAATTAAATTGATTAATCCTCCTGAATATTTTCAACTTGAAGTTC
AAGCACAGAAGTGTTCTCATTTTAGTTGAATAAAATTTATAAACATATAT
TTAGACGTTTCGGTGTCTTCCGATCACCATATCATCAGTAAAAATTAGGA
AACACTAAACCAATTTTCAATATATCATCTAATTTACAAATACAGCCTTT
CCAAACATGATACATATAAATACTTCTAATGCATGGACAGATTTCGCAAA
ATGAAAGTAACCTGAAACTATTTGTTTCCATGAGCAAGTATTGACACGAT
ATTTCAATAATCTCTTGTCAATGAATTTATTTTATCAAAATAGATAATCT
TTGCAGCTCTTATTTCAGTTTGTTTCAGCTTGTTTGATTGAGCTCTCTGC
AAATTGATACATGTGTGTATGTAGAAAGAAACGTTGCTAGAAAACACACC
TCTTTTATGTAGGAAAGGAGTTTTCAGAAATTTGGGATCGTTTAAAGAAT
AATGGACAATTCATGTAACTGAGAGATGCAATTTTTGTGCTTTAGTGAAC
AAATTTTGGCCGAAATATGACAGACAGACAGACAGACAGACGGACAAAGT
TATGGTGAAATTTTTGCTTTATTCAAATTATTTTATTATTTTCCATTTTA
TTTAGAAAGATATAAAATACAAAAATGTCAGCGCTTTTATCCTTGATATT
TTACACGTGGCTAGGATATTGGTCATACCGTGTCATTAAATTCGTCTTGT
TTATGATCACGTGTCATGTTCTACCTTCTTTTGGTATTTATAATGACCTC
AAGAAGTATGGTCAATGGGCTATCATTACTGGCGCTACTGATGGTATTGG
TAAGGCTTATGCTGTGGAGCTCGCCAAGCAGAAATTCAACATCGTCTTGA
TCAGCCGAACGGAAGAGAAATTACAACGAGTGGCTGAGGAGATTAAAAAT
GCTCATGGTGTCGACACCAAATATATTGTTTTTGATTTTTCTACACCTGA
GGGTTATGAAGAACGTATTGGGAATGTGATCTCAGATCTGGATGTTGGAG
TTTTGGTCAATAACGTTGGTATGTCCAGTAAGTGGGATCGCTTGTATGAT
GAGTTGGAGATGGCTGAACATATCCGTGTCATGCATACCAACACCTTTGG
TGAAATGCATATGACGTATATGCTGACGAAGAAAATGATTCAACAAAAAC
GTGGTATTATGATTCACATTTCCAGCTTCTTTGGTTATTATCCGATCGGT
TTAATAAGTGTTTATTCACCTACTAAAGCCTTCGTCAACTCTTTCGTCCA
GAATCTCCAAGCTGAAACTAAACACTGCAAAGACGTCCATCATCAATTAG
TGACGCCCTTCTTTGTTGCCACAAATATGACCAAAGGGAGTGTTAAAGTC
ACCAGAGTTACCCCAGATGCTGCCACCTTTGCTGGCGCAGCTTTACGCAC
CGTTGGCTTAACGCCGCACACTTTTGGGTACTGGACTCATGATATTCTTG
GGTCAATCTTAATGACCTTTCCACCTTTTGTTTTTGGTAGATTACCGTTT
GTCAAAAGCTTTCAAAAGTATTGTAAAAACAGACGCTTAAAGACCCTCGA
GAAAAGCGAGTGAGAAAAACATTAGGTTGGTTTCATAATTTTGATTATTG
CTTTGTTTTTGCTACCCATTTATATCGTAACTTTTACAGTGCGTAGAGAC
CCCTAGATATCCAACTTCTCAGATAATCTTCCTGTCATTTTTGTAAATAA
TATTAACCTCTGGGTATCGTATTTTGAACCAGGGGGGGGCACGCAGTTAC
TACAAGACAGTATGACACTTACTACCGTGGTGGTACTGTATTCAGAAGTT
ATGAAAACAGTTACTACACAGTGTAG Coding sequence (CDS) from alignment at sc0000002:1197968..1202743- >TCONS_00000590 ID=TCONS_00000590|Name=TCONS_00000590|organism=Clytia hemisphaerica|type=CDS|length=939bp|location=Sequence derived from alignment at sc0000002:1197968..1202743- (Clytia hemisphaerica)
ATGTCAGCGCTTTTATCCTTGATATTTTACACGTGGCTAGGATATTGGTC
ATACCGTGTCATTAAATTCGTCTTGTTTATGATCACGTGTCATGTTCTAC
CTTCTTTTGGTATTTATAATGACCTCAAGAAGTATGGTCAATGGGCTATC
ATTACTGGCGCTACTGATGGTATTGGTAAGGCTTATGCTGTGGAGCTCGC
CAAGCAGAAATTCAACATCGTCTTGATCAGCCGAACGGAAGAGAAATTAC
AACGAGTGGCTGAGGAGATTAAAAATGCTCATGGTGTCGACACCAAATAT
ATTGTTTTTGATTTTTCTACACCTGAGGGTTATGAAGAACGTATTGGGAA
TGTGATCTCAGATCTGGATGTTGGAGTTTTGGTCAATAACGTTGGTATGT
CCAGTAAGTGGGATCGCTTGTATGATGAGTTGGAGATGGCTGAACATATC
CGTGTCATGCATACCAACACCTTTGGTGAAATGCATATGACGTATATGCT
GACGAAGAAAATGATTCAACAAAAACGTGGTATTATGATTCACATTTCCA
GCTTCTTTGGTTATTATCCGATCGGTTTAATAAGTGTTTATTCACCTACT
AAAGCCTTCGTCAACTCTTTCGTCCAGAATCTCCAAGCTGAAACTAAACA
CTGCAAAGACGTCCATCATCAATTAGTGACGCCCTTCTTTGTTGCCACAA
ATATGACCAAAGGGAGTGTTAAAGTCACCAGAGTTACCCCAGATGCTGCC
ACCTTTGCTGGCGCAGCTTTACGCACCGTTGGCTTAACGCCGCACACTTT
TGGGTACTGGACTCATGATATTCTTGGGTCAATCTTAATGACCTTTCCAC
CTTTTGTTTTTGGTAGATTACCGTTTGTCAAAAGCTTTCAAAAGTATTGT
AAAAACAGACGCTTAAAGACCCTCGAGAAAAGCGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00000590-exon-sc0000002-1575043694:1202588..1202743 | TCONS_00000590-exon-sc0000002-1575043694:1202588..1202743 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1575043694:1201833..1202168 | TCONS_00000590-exon-sc0000002-1575043694:1201833..1202168 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1575043694:1200041..1200273 | TCONS_00000590-exon-sc0000002-1575043694:1200041..1200273 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1575043694:1197968..1199184 | TCONS_00000590-exon-sc0000002-1575043694:1197968..1199184 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1510915933:1202588..1202743 | TCONS_00000590-exon-sc0000002-1510915933:1202588..1202743 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1510915933:1201833..1202168 | TCONS_00000590-exon-sc0000002-1510915933:1201833..1202168 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1510915933:1200041..1200273 | TCONS_00000590-exon-sc0000002-1510915933:1200041..1200273 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1510915933:1197968..1199184 | TCONS_00000590-exon-sc0000002-1510915933:1197968..1199184 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1491911889:1202588..1202743 | TCONS_00000590-exon-sc0000002-1491911889:1202588..1202743 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1491911889:1201833..1202168 | TCONS_00000590-exon-sc0000002-1491911889:1201833..1202168 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1491911889:1200041..1200273 | TCONS_00000590-exon-sc0000002-1491911889:1200041..1200273 | Clytia hemisphaerica | exon |
| TCONS_00000590-exon-sc0000002-1491911889:1197968..1199184 | TCONS_00000590-exon-sc0000002-1491911889:1197968..1199184 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1197968..1202743 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000590 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2) HSP 1 Score: 180.259 bits (456), Expect = 8.629e-51 Identity = 114/320 (35.62%), Postives = 186/320 (58.13%), Query Frame = 3
Query: 744 SALLSLIFYTWLG-----YWSYRVIKFVLFMITCHVLPSFGIYNDL---KKYGQWAIITGATDGIGKAYAVELAKQKFNIVLISRTEEKLQRVAEEIKNAHGVDTKYIVFDFSTPEGYEERIGNVISDLDVGVLVNNVGMSSKWDRLYDELEMAEHI--RVMHTNTFGEMHMTYMLTKKMIQQKRGIMIHISSFFGYYPIGLISVYSPTKAFVNSFVQNLQAETKHCKDVHHQLVTPFFVATNMTKGSVKVTRVTPDAATFAGAALRTVGLTPHTFGYWTHDILGSILMTFPPFVFGRLPFVKSFQKYCKNRRLKTLEKS 1673
SAL + F W+G Y + R I + LF L +G+ N+ G+WA++TG+TDGIGK+YA ELAK +VLISR+++KL +V+ EIK V+T+ I DF++ + Y ++I ++ L++G+LVNNVGMS ++ + ++ +++ ++++ N MT ++ M+++ +G +++ISS G P+ L+++YS TK FV+ F Q L E + K V Q V P+FVAT + K K T P TF +A++TVGL T GY H ++GSI+ P +++ L V + K + LK +K+
Sbjct: 3 SALPAAGFLYWVGAGTVAYLALR-ISYSLFT----ALRVWGVGNEAGVGPGLGEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFASEDIY-DKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYR-SKGVFVQSVLPYFVATKLAKIR-KPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPSWIY--LKIVMNMNKSTRAHYLKKTKKN 312
The following BLAST results are available for this feature:
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