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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000589 ID=TCONS_00000589|Name=TCONS_00000589|organism=Clytia hemisphaerica|type=transcript|length=2056bp
GTTTTAGATAAAACATATAGAGCatacaaaaagttataaaaaagttACAG
CATGGATAAATTCGTGATTAGAACACCACGTGATCAGGTCAATgacaaac
aaaatggtagacctCAGAAGCCAAGGAAGAAACAGACCACTATTGAGTCA
TTATCGAGGGTTGTTATCGTGGAACAGGTGCATCGTCAGaaagaaatcct
gaaaaacgCAGAAACCACACCACAATTTCTCATCTCAACACTAAAAGACC
TGCACAAAGCTATCCCTTCAAAAAGTGTTCTACTAGAGACGAAAGTTGGT
CACGTGGTCAATAAATTACGTCATCATTCCGATCCAGAGGTCAAAGAACA
GGCGCGTTTACTACTTAAGAAATGGAAGAAGTTTTATAGAGAGATCAATG
CACGCCAACCAATAGATGTACGGTCTGACTTGAAGACGGAAAAGTTCCGA
ACAAAAGCAAAACAGCTTTTAAGGAAAGCAATCGGCATTAAAGATGACCA
CGCTATAGCTTTGTCGATCGAGAAAACGATATACCGCGCTGAGAAATCGG
TCAACACGCCAAAATATCGGAGGCTGATACGAACTATATGCATCAAAGTA
ACTAATGACTCGCAGACCAAGGAACAACTCAAAAACGGCAAACTTTCTAC
TGTTTCGTTGATTAAAATGATTGAAAGTTCAGTGACTTGAGGTTTGACGA
ATGAAAACGGTTTTCAGTTTGAGAGTGAACAAATTTTGGCCGAAAtatga
cagacagacagacagacagacggacaaagttatggtgaaatttttgcttt
attcaaattattttattattttccattttatttagaaagatataaaatac
aaaaatgtcaGCGCTTTTATCCTTGATATTTTACACGTGGCTAGGATATT
GGTCATACCGTGTCATTAAATTCGTCTTGTTTATGATCACGTGTCATGTT
CTACCTTCTTTTGGTATTTATAATGACCTCAAGAAGTATGGTCAATGGGC
TATCATTACTGGCGCTACTGATGGTATTGGTAAGGCTTATGCTGTGGAGC
TCGCCAAGCAGAAATTCAACATCGTCTTGATCAGCCGAACGGAAGAGAAA
TTACAACGAGTGGCTGAGGAGATTAAAAATGCTCATGGTGTCGACACCAA
ATatattgtttttgatttttctacacCTGAGGGTTATGAAGAACGTATTG
GGAATGTGATCTCAGATCTGGATGTTGGAGTTTTGGTCAATAACGTTGGT
ATGTCCAGTAAGTGGGATCGCTTGTATGATGAGTTGGAGATGGCTGAACA
TATCCGTGTCATGCATACCAACACCTTTGGTGAAATGCATATGACGTATA
TGCTGACGAAGAAAATGATTCAACAAAAACGTGGTATTATGATTCACATT
TCCAGCTTCTTTGGTTATTATCCGATCGGTTTAATAAGTGTTTATTCACC
TACTAAAGCCTTCGTCAACTCTTTCGTCCAGAATCTCCAAGCTGAAACTA
AACACTGCAAAGACGTCCATCATCAATTAGTGACGCCCTTCTTTGTTGCC
ACAAATATGACCAAAGGGAGTGTTAAAGTCACCAGAGTTACCCCAGATGC
TGCCACCTTTGCTGGCGCAGCTTTACGCACCGTTGGCTTAACGCCGCACA
CTTTTGGGTACTGGACTCATGATATTCTTGGGTCAATCTTAATGACCTTT
CCACCTTTTGTTTTTGGTAGATTACCGTTtgtcaaaagctttcaaaagtA
TTGTAAAAACAGACGCTTAAAGACCCTCGAGAAAAGCGAGTGAGAAAAAC
ATTAGGTTGGTTTCATAATTTTGATTATTGCTTTGTTTTTGCTACCCATT
TATATCGTAACTTTTACAGTGCGTAGAGACCCCTAGATATCCAACTTCTC
AGATAATCTTCCtgtcatttttgtaaataataTTAACCTCTGGGTATCGT
ATTTTGAAccaggggggggcacgcagttactacaagacagtatgacactt
actaccgtggtggtactgtattcagaagttatgaaaacagttactacaca
gtgtag Run BLAST on NCBI transcript from alignment at sc0000002:1197968..1202743- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000589 ID=TCONS_00000589|Name=TCONS_00000589|organism=Clytia hemisphaerica|type=transcript|length=4776bp|location=Sequence derived from alignment at sc0000002:1197968..1202743- (Clytia hemisphaerica)
GTTTTAGATAAAACATATAGAGCATACAAAAAGTTATAAAAAAGTTACAG
CATGGATAAATTCGTGATTAGAACACCACGTGATCAGGTCAATGACAAAC
AAAATGGTAGACCTCAGAAGCCAAGGAAGAAACAGACCACTATTGAGTCA
TTATCGGTGAGCAATTGAATTTAATGCACTGCACAATGGTAAAGTACACA
GGATTTTTCATTGAAACTTCACACCCCCTTCTCACTTTTCACAGACCCGG
TAAGTTTTTTTCAGCCAGTGGGAGTAGAAATATCCGACAGGGTCAACTTT
TGGTCATTCCAAGAAACCATTTTTTAGGGTTTGTTTTAAAAAGTAATTGA
AACTTTGAATCTGATAGCATCCACAATCCAGGTAGTCAATAGATGGTTTT
TTATGTTTTGTTTTTAAGTTACGTAACTTCTGCAATTATGAAAGCAAACG
TTCGATTTGCGAATGTATCCTCTACATGTTCGAATGTTTGCTTCCATAAT
GGCTGAAATTACGTAAGATAGCCAAACATGAAAAACCTCTATACTGTATT
TACAATCGAAATCAAATCTTTTTAGAGGGTTGTTATCGTGGAACAGGTGC
ATCGTCAGAAAGAAATCCTGAAAAACGCAGAAACCACACCACAATTTCTC
ATCTCAACACTAAAAGACCTGCACAAAGCTATCCCTTCAAAAAGTGTTCT
ACTAGAGACGAAAGTTGGTCACGTGGTCAATAAATTACGTCATCATTCCG
ATCCAGAGGTCAAAGAACAGGCGCGTTTACTACTTAAGAAATGGAAGAAG
TTTTATAGAGAGATCAATGCACGCCAACCAATAGATGTACGGTCTGACTT
GAAGACGGAAAAGTTCCGAACAAAAGCAAAACAGCTTTTAAGGAAAGCAA
TCGGCATTAAAGTAAGTCGTATTTGATTTCTTTATTATCCTTTTTGCTGG
ACAAGTTTTTAAAAATCCTTCATGTGCAGATTGAACAGATTTCCCTTCTT
TTATAGGAAGTTGTCGTTTTTGTTTAGGTTTCAGTTTTCGTTATTTTTCT
TTGTTCAGAATGGCCCTTCATGGAATTAATTCTTCAGATGCTTAAAAGCT
TTTGAATTTCGGAGAATGCCACTTTAAAACAAATGTTATTGATTATTACC
CGCATCTGCATTCTTTGTCCTTAGCAGTAATAAATAGCCCCTGTTTTTTT
AGATCATTGGATTATGGAGTCTCCATTTCTAACGCAAACGTGTCTTCAAC
TCGAACAAGTTGATAGACCCTTCAAATTAGCAAACTCTATAAACCAGTCT
CAAAAACTGGGACAAATTTGTGTTCCCCGTGCGTGTTCTAATTCTAGAAA
TTCCACTGTATCTATGCTTGTTCTTATACTTTTAAATAACTTTAGTTTGG
GCAAAAATGAAAAAATGTAGTGTTTCTGGAAACCGGCCGGGTGAAAAAAA
ATAATTTTCTGACCCGGCCGCAGACTACATTAGTAGTTGATACATATTCA
AGGCGTACATAAAAGTTATCTTTAAAGTTCAATGATCTTAAGTTATCAAA
AATAGCAACAAAAAAAATTTTTCGGCCGGCCCCATGAAAGCTTTTTTCCT
TAACCCGCATTCCGGAAACACTACATTTTTTTATTTTCACCTTCCCTGTA
ATTTTAAAATCACAAAATGCAGACCCTAAAAAGGACATATTATTGACCTA
GGCCTTTTTCCTTCGAAGTATTTCATTATTTGATTGAAATAATAATTTTA
GAAACTTGCAAACAATCTCATTTCCAAAAGGGTTTTTTGAAATAATTTTT
GTGAACATGGATTCTAATTAACATCATTCAAAAATTAAGTAACTTTACGT
CTCTTTCATTAGCAAGGGAATGTTACAAAATTTCTTAGCAATTAAAATCA
AATGTATATAACGATTGAAAATAGAAAAATTCCATTGTTCTCTAAAAATG
TTAAAAATGTGAAAACCGCCTATACAAAAACGGCGAAAATATAAAGCTGC
AACCATCTTTTTTTTGCGTTTGGAAATGAATTTTGATTTTCTTGAACAAA
ATCTTCCGAAAATGGATTAATATTACAGGAAGATCTTGTAATATAATCTG
ATTGCAAACTTGCTGGATATATACCACACCTCGGGTGAAAGTTTATAAAA
AATTGAGCTCATAAAAACTTCAAGTCAGCTTATAGACTACGAATGCGTAG
GAGTAATAAGTAAATGAAGAAGTTTTTGGAAAAGTTGTTACATGATTCTT
TCGAAATACAGATAGAATAGCAAGATTTTTTTAGAACAGAGTTTATGTTT
TCTGAATGAAGTTTTTAAAAGCCATCAAACTTTCGATGATAAGCATATAA
TTAGGACAATTAAATGGGATTTTATCTTTTTTGACTACACATGTTATCAG
CAGTAATAGATTAGCCGACGAATTTTCATGTTTTAACTTTTAGTTTTTTT
CATATATATTTGTTCGTTAGGATGACCACGCTATAGCTTTGTCGATCGAG
AAAACGATATACCGCGCTGAGAAATCGGTCAACACGCCAAAATATCGGAG
GCTGATACGAACTATATGCATCAAAGTAACTAATGACTCGCAGACCAAGG
AACAACTCAAAAACGGCAAACTTTCTACTGTTTCGTTGATTAAAATGATT
GAAAGTTCAGTGACTTGAGGTTTGACGAATGAAAACGGTTTTCAGTTTGA
GAGGTTTGTATTGCATGAAAATTTCATTATTTTGGAAGACCTTTGGTAAA
GCTGTACCTTTAGCCTTTAACCATTGAACTTAAAGAGGATTCTCAATCGC
GGCTCGTTTTTTAACAATATTAAAAATTGGTTTGCTTGTATATTATCTGT
GTACATAGTTGTTTTTATTCAAACCCCAAGGAAAATGAAATTTTTACAGA
AACATTAATTAAATTGATTAATCCTCCTGAATATTTTCAACTTGAAGTTC
AAGCACAGAAGTGTTCTCATTTTAGTTGAATAAAATTTATAAACATATAT
TTAGACGTTTCGGTGTCTTCCGATCACCATATCATCAGTAAAAATTAGGA
AACACTAAACCAATTTTCAATATATCATCTAATTTACAAATACAGCCTTT
CCAAACATGATACATATAAATACTTCTAATGCATGGACAGATTTCGCAAA
ATGAAAGTAACCTGAAACTATTTGTTTCCATGAGCAAGTATTGACACGAT
ATTTCAATAATCTCTTGTCAATGAATTTATTTTATCAAAATAGATAATCT
TTGCAGCTCTTATTTCAGTTTGTTTCAGCTTGTTTGATTGAGCTCTCTGC
AAATTGATACATGTGTGTATGTAGAAAGAAACGTTGCTAGAAAACACACC
TCTTTTATGTAGGAAAGGAGTTTTCAGAAATTTGGGATCGTTTAAAGAAT
AATGGACAATTCATGTAACTGAGAGATGCAATTTTTGTGCTTTAGTGAAC
AAATTTTGGCCGAAATATGACAGACAGACAGACAGACAGACGGACAAAGT
TATGGTGAAATTTTTGCTTTATTCAAATTATTTTATTATTTTCCATTTTA
TTTAGAAAGATATAAAATACAAAAATGTCAGCGCTTTTATCCTTGATATT
TTACACGTGGCTAGGATATTGGTCATACCGTGTCATTAAATTCGTCTTGT
TTATGATCACGTGTCATGTTCTACCTTCTTTTGGTATTTATAATGACCTC
AAGAAGTATGGTCAATGGGCTATCATTACTGGCGCTACTGATGGTATTGG
TAAGGCTTATGCTGTGGAGCTCGCCAAGCAGAAATTCAACATCGTCTTGA
TCAGCCGAACGGAAGAGAAATTACAACGAGTGGCTGAGGAGATTAAAAAT
GCTCATGGTGTCGACACCAAATATATTGTTTTTGATTTTTCTACACCTGA
GGGTTATGAAGAACGTATTGGGAATGTGATCTCAGATCTGGATGTTGGAG
TTTTGGTCAATAACGTTGGTATGTCCAGTAAGTGGGATCGCTTGTATGAT
GAGTTGGAGATGGCTGAACATATCCGTGTCATGCATACCAACACCTTTGG
TGAAATGCATATGACGTATATGCTGACGAAGAAAATGATTCAACAAAAAC
GTGGTATTATGATTCACATTTCCAGCTTCTTTGGTTATTATCCGATCGGT
TTAATAAGTGTTTATTCACCTACTAAAGCCTTCGTCAACTCTTTCGTCCA
GAATCTCCAAGCTGAAACTAAACACTGCAAAGACGTCCATCATCAATTAG
TGACGCCCTTCTTTGTTGCCACAAATATGACCAAAGGGAGTGTTAAAGTC
ACCAGAGTTACCCCAGATGCTGCCACCTTTGCTGGCGCAGCTTTACGCAC
CGTTGGCTTAACGCCGCACACTTTTGGGTACTGGACTCATGATATTCTTG
GGTCAATCTTAATGACCTTTCCACCTTTTGTTTTTGGTAGATTACCGTTT
GTCAAAAGCTTTCAAAAGTATTGTAAAAACAGACGCTTAAAGACCCTCGA
GAAAAGCGAGTGAGAAAAACATTAGGTTGGTTTCATAATTTTGATTATTG
CTTTGTTTTTGCTACCCATTTATATCGTAACTTTTACAGTGCGTAGAGAC
CCCTAGATATCCAACTTCTCAGATAATCTTCCTGTCATTTTTGTAAATAA
TATTAACCTCTGGGTATCGTATTTTGAACCAGGGGGGGGCACGCAGTTAC
TACAAGACAGTATGACACTTACTACCGTGGTGGTACTGTATTCAGAAGTT
ATGAAAACAGTTACTACACAGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000589-exon-sc0000002-1575043694:1202588..1202743 | TCONS_00000589-exon-sc0000002-1575043694:1202588..1202743 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1575043694:1201833..1202168 | TCONS_00000589-exon-sc0000002-1575043694:1201833..1202168 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1575043694:1200041..1200273 | TCONS_00000589-exon-sc0000002-1575043694:1200041..1200273 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1575043694:1197968..1199298 | TCONS_00000589-exon-sc0000002-1575043694:1197968..1199298 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1510915933:1202588..1202743 | TCONS_00000589-exon-sc0000002-1510915933:1202588..1202743 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1510915933:1201833..1202168 | TCONS_00000589-exon-sc0000002-1510915933:1201833..1202168 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1510915933:1200041..1200273 | TCONS_00000589-exon-sc0000002-1510915933:1200041..1200273 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1510915933:1197968..1199298 | TCONS_00000589-exon-sc0000002-1510915933:1197968..1199298 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1491911889:1202588..1202743 | TCONS_00000589-exon-sc0000002-1491911889:1202588..1202743 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1491911889:1201833..1202168 | TCONS_00000589-exon-sc0000002-1491911889:1201833..1202168 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1491911889:1200041..1200273 | TCONS_00000589-exon-sc0000002-1491911889:1200041..1200273 | Clytia hemisphaerica | exon |
| TCONS_00000589-exon-sc0000002-1491911889:1197968..1199298 | TCONS_00000589-exon-sc0000002-1491911889:1197968..1199298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1197968..1202743 - |
Blast
BLAST of TCONS_00000589 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2) HSP 1 Score: 180.259 bits (456), Expect = 1.119e-50 Identity = 114/320 (35.62%), Postives = 186/320 (58.13%), Query Frame = 3
Query: 858 SALLSLIFYTWLG-----YWSYRVIKFVLFMITCHVLPSFGIYNDL---KKYGQWAIITGATDGIGKAYAVELAKQKFNIVLISRTEEKLQRVAEEIKNAHGVDTKYIVFDFSTPEGYEERIGNVISDLDVGVLVNNVGMSSKWDRLYDELEMAEHI--RVMHTNTFGEMHMTYMLTKKMIQQKRGIMIHISSFFGYYPIGLISVYSPTKAFVNSFVQNLQAETKHCKDVHHQLVTPFFVATNMTKGSVKVTRVTPDAATFAGAALRTVGLTPHTFGYWTHDILGSILMTFPPFVFGRLPFVKSFQKYCKNRRLKTLEKS 1787
SAL + F W+G Y + R I + LF L +G+ N+ G+WA++TG+TDGIGK+YA ELAK +VLISR+++KL +V+ EIK V+T+ I DF++ + Y ++I ++ L++G+LVNNVGMS ++ + ++ +++ ++++ N MT ++ M+++ +G +++ISS G P+ L+++YS TK FV+ F Q L E + K V Q V P+FVAT + K K T P TF +A++TVGL T GY H ++GSI+ P +++ L V + K + LK +K+
Sbjct: 3 SALPAAGFLYWVGAGTVAYLALR-ISYSLFT----ALRVWGVGNEAGVGPGLGEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFASEDIY-DKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYR-SKGVFVQSVLPYFVATKLAKIR-KPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPSWIY--LKIVMNMNKSTRAHYLKKTKKN 312
The following BLAST results are available for this feature:
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