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TCONS_00000583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000583
Unique NameTCONS_00000583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000583 ID=TCONS_00000583|Name=TCONS_00000583|organism=Clytia hemisphaerica|type=transcript|length=2363bp
TCTAGATGAGTACACATACTAAATCAATAGAAGAAGaactaaaaaatctt
tattgtTATCTGGAAATCGATGGAGATACCAAATTAACCGTTTTCACCAA
AACTGATGATGGTGACGACAAATCTGTCATGATGTGCACATGTGATGGAT
GCAATGTTTTCACCTACACACTTTCTGATGGCAACATTACTGACTTGGTA
GCTGATGGGGGATTCTCAGACAGAAATTCTTTGTTGGATCATATCAGGAG
CTGTTTCCAAAGCAACACAGTGAAAGCTACCATATTTGATGAGTACGTCA
TAACACGTTTTGAAAAGGACAGTCTCTCATTAACGTTGAAATGCCACAGT
ACAACAGCAGTGGAACGAAAGACTATCTTACAATACTCCTATCTCAAAAT
GGCCGACGAACTAGAAAAATATAAAGCAAGAGTCAAAGAGCTTGAAGAGA
GCAACAATAAAAGAAGTTTTGCAGAACCTTCTACATCCGTTATTACACCT
TCCATCTTTGagCCTGACGTGAAACGACCCAAAGTTACAAAACCAAAAGT
CAACAAAAATAGCAGTATTGTTAATCCTGGCGTCAGAAAGAAGAAAGCAG
CGAGAGGAGTAGTGTTTGATGACTGAATGAAAAAGATAAACCAGAGAGAT
GTACGCTTTCAGATTCTTTACCCCCGTCCTTTCAAGAGTACCAATTTGAT
TGGCTGATTGGAAATATCAAATATCGAAAATTTTGTCGAAGAGAAAAATG
TATTGGTAGCCAAATAGACTAAGTGGTGAGGACCTAAACTTGTttaggaa
gaaaatttggctttGGAGAACTATGTACCTGAACTTCACTTGGATTTTAT
TGTTCATAATTTAATGGAAATCAAAAGCTGATGACTTTTACCATGGAATC
AATGTACAGTTTTCTGTAGACGAAAACCGAAGATCGATATCGTTGAACTG
GAACGACCAGTATATTAAAAAAGTGGAAAACTTAAAAGTACCTAAAGTAt
taattcgatattttttactTTGTCTAAATGGAAATTATGACCGTATTTTA
GCCAAGGAAATGGACCGTAAGGGATCGACCCTTTTCGCCTAAATCTCAAC
AAATTTGGCTAAACTTTCTCTGCACTGTGAGAGTCGGATTTCAACGGCCT
AATTTTCCTAATTTTGGATCGCACGTACGGTTGTTTTTTGAATCGAGAGC
CCCTCCTGGAGCTTTAAAAATATCTATGAGATGCTGTCAAAAAGATCCCG
TTGTAGTAATTATTCTTTTATATGTATGAAAAACCGCTCTATCGGGTATC
GAAATTTTTCCTTACATTGGCCCCTAACGAAGTCTTAAGAGGTACTAAAT
AGGCTCTAATTGAAATCAAAGGAAATTTTAGACGATAATCAGTTTATCAT
TGGAAAGGTGCATACTCCTTGGACGTAATTCAAACATCGTTTCTAATTTG
TACTTTCAAACAAAGTAGGACATTTGAGTTCATACCAGAATGGACCagga
gaaatcatttttaacaTAGACCTATTGTATTGATTTGTAGAGGtcaaatt
aaaatgtttttttgcaaaagttggCATTTTTGGATTCGGAATATTACCCA
ATAAAATtcgtttttaaagattttggaattacacaaaaatcatcatcatc
atcatgaaGTATTTGGTTTTGATTGCTTTTATTGCTTTTGCTGCAGCACA
GCCTGCTAATGACAAAAGATTCTTCAATAAGATCACCAATTTTGGCAAGA
ATGTCGTCGATGCTGGTAAAGGTGCAGTTGATAAAGTCACCGATTATTTT
GGTGGAGATGACAAACCCTCACTCAAAGATAGATTGTCTGACTTGAAAGA
CGAATTGGAATTGATTCGAGTTCATAACGAAAAACATATGATGAATGTCA
CCAACAAAACTAACCATGGTCTTAACAGAGTTGCCAATGCTTTGGATAAA
CTCAATGATAATGCTATGGACAAAATTATCTCTGTCGAAGATGTTTTGAA
CGACTTGGCTATTCGTCTTGAGGACACTTTGAACAAAGCTTCAGCTTACA
TGAGAGACGGTATCGATTATCTTACAGACATGcaagaaaaacacaaagaa
CACTTTCAAGAACACATTGATGGCCTTAAAGGAGATGTTGAAGACATCAA
AGAAGattaattttcttatttaatgATGGAAGAATGAAATATACAATGAA
ATACTCtcccttcaaaataatttcttttgttgaagtAATTTCAAAGTCAT
TTTTTGCTTACATACGATATCTTCTTGATAAGTATCAAATTCATGGCTTT
TTTAGAGTTTATGTTATTTggttgactttcaaaaattttctatttggcca
AAGCCTCCTTTAC
Run BLAST on NCBI

protein sequence of TCONS_00000583-protein

>TCONS_00000583-protein ID=TCONS_00000583-protein|Name=TCONS_00000583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MSTHTKSIEEELKNLYCYLEIDGDTKLTVFTKTDDGDDKSVMMCTCDGCN
VFTYTLSDGNITDLVADGGFSDRNSLLDHIRSCFQSNTVKATIFDEYVIT
RFEKDSLSLTLKCHSTTAVERKTILQYSYLKMADELEKYKARVKELEESN
NKRSFAEPSTSVITPSIFEPDVKRPKVTKPKVNKNSSIVNPGVRKKKAAR
GVVFDD
Run BLAST on NCBI

transcript from alignment at sc0000002:1174689..1184409-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000583 ID=TCONS_00000583|Name=TCONS_00000583|organism=Clytia hemisphaerica|type=transcript|length=9721bp|location=Sequence derived from alignment at sc0000002:1174689..1184409- (Clytia hemisphaerica)
TCTAGATGAGTACACATACTAAATCAATAGAAGAAGAACTAAAAAATCTT TATTGTTATCTGGAAATCGATGGAGATACCAAATTAACCGTTTTCACCAA AACTGATGATGGTGACGACAAATCTGTCATGATGTGGTAAGAAAGCTTCA TTTTTTCCAAGACAGTAGCAAGAGATCAATGATACCTTAAACCATGTTCG CACGTGACGGTTCCGTTTCGCTCCGAAACGGAATGAAGCCATTCTATTGT TTAGAAGTGACGTAACACTTGAATGTAACCAATAGAATGACATCATTTAA TCGTTTCGGAGTGAAACGGAACCGTCACGTGTGAACATGGTCTTATAGGA ACGTGAACTATGGGAGTGACGAAAATAATTTGTTTTATCGGAAAATATTT TAGTAGGTACAGAGGTTTTTAGTTACACATTTTCTGCCATTATGGAGGCA AACGTTGTGTATATGAAACCGGGAGGGACGGAGAGTGACGAAAAATTGTT TATGGGAAATATTTCTATAGGTACATGTTTGACTGAGCTACGCAGTTTCT TATGGTAGTAAATGTTCGAATCTGCAGAGGTGATCCATTGCGCAAAGTAA ATGTTTGCTTTCATAATGGCGGTCATTACGTAACATAACCAAACATGAAC AACCTCTAGTTGATTTCAGTTTTCCGTCCTTTTCATTCAGCACATGTGAT GGATGCAATGTTTTCACCTACACACTTTCTGATGGCAACATTACTGACTT GGTAAGACAAAGAAAGTCCATTTATTTAGACAGACTCCTTTTGTTTTTTT GTCCAATGTCCAATGTAGGAAGAGAAAATTTCTTTCTGCATCAGTTTTTC TCTAAAGTGACGACAAAGGCTCATTATGTAAGAAGGTCGTCCAGTTATCA CTTCATATGGATTTAGTTATGTGTTAGATGATTAATCTTTTTGGTCTGAA GTACTGTGATGATCTTTTTTAAAAGAGAACGTTTGCCACGAACTGATCTT CTCGGATCCCTCTTTTGCTTGCAAAAGTAGCTTGAGCGTGCTAAAGCTAT TTTATTATAAATACAAGATTTCAGGAGGGTAAGAAATGAAATCTTCTTTC AAATTTATAGGTAGCTGATGGGGGATTCTCAGACAGAAATTCTTTGTTGG ATCATATCAGGTAAGATTTACATGTTAGTAAAAGCCCTTTTTCAATTACT CATCATCTGGTTGAGGCTATCACTATGACTCGCTACCAATCCGCCGACTT GTACCGCAAAAGACTATGTTCGAATCTCAAGAATTTCCAGGAAGGGTGTC AGGGAAGCATGCTGATAGACTCTCTACCTGTTTTTTTTGTTGATGACATC ACAACGATAATCTTTTCCCGATATGCCTGAATACCGTACTGTCAGCATCT TGGTGATACCCCCTTGCCCTTGTTTTGCCTGAACCAAGAGTTGTAAAGAA GAATTAAGAAATGTTAGCTCTAGTTTAGACGGTCGATTTTTATTCAAATT GATAGAGTAGGCAGAAAGTGGGCAGAAAAGTGGTTGTTAAAAACTGTGCA AAAAGATTGAAAGAAGTCAATGAAGTGCCATCAACAGAGGGCTATGCATC GACTTTAGACAACCAACTTTCTGCCCACTTTAATTCATAATAAACCAGCT GCGCTGGAAGGTCAGCCTAAATTGCTTAATATGATTAGAAAGATATGTTG TTAAAAATTGATATGATTTACTAAAACGAGAGTGANNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNCACGCTAAAAGTACGCAAAAAGTTA ACCCGATCGGAAGAAAGTTTAGAAATCAAAGTGATATCGGGAAATCGGAA TAAAAAAACCAAACTCTTAAGTTGCGGCTGGAAAAAAGGGATTTGAAGGG TCATCGGAGCTGACCAATAAGAATAGGCAAGGTGAAAAGTGGGCCGTCTA AACCAGAGCTAAAATGCCTCGATACTTTATCACAGGAGCTGTTTCCAAAG CAACACAGTGAAAGCTACCATATTTGATGAGTACGTCATAACACGTTTTG AAAAGGACAGTCTCTCATTAACGTTGAAATGCCACAGTACAACAGCAGTG GAACGAAAGACTATCTTACAATACTCCTATCTCAAAATGGCCGACGAACT AGAAAAATATAAAGCAAGAGTCAAAGGTTTGTTTTTGAAGCTATTACCAG TATTTGGTTTAATTTTATAGGAAGATAAAATGAGTTTACCGATCTTTCTT GACTCGCATCAATACTCTTTTTTCATCGAGGCAAATTTTCTCCCTTGCCT CCGTTAGATTTTGTCAAAATCGATCAAAGCTCAGTTGGCTGAAGCATAGC TTTCGTATCATTTAAATGATGAGTTCACATCCATTTGTCGCGAGCATTAA TATGATATATAGTTTTTACCTCTTTTTAAACTTCGAAATTTTGAAATAAA TTCAGTATAGAGAATTCTGCTAAATAATGTTCAACAACAATATACTCTTT CGTGCTTAATTATAAAGGGTTAGAATAAGCAGGGGGTGGTGCTCTAGGGA AAATCCATAAAAGGGGGGGGGGGGGGGGGAATTGGGAAAAATAAAAAAGG GGGGGGGGGGGGGGGAATTGGGAAAAATAAAAAAGGGGGGGGGGGGGGGG GAATTGGGAAAAATAAAAAAGGGGGGGGGGGGGGGGGAATTGGGAAAAAT AAAAAAGGGGGGGGGGGGGGGGGAATTGGGAAAAATAAAAAAGGGGGGGG GGGGGGGGGAATTGGGAAAAATAAAAAAGGGGGGGGGGGGGGTCAATATT AATTAATTTTTGGGTGATCTTCCTAAACCCCCTAGAGGAAAATGAAGGTT TTTTCAGAAAAATTTCATAAAATGGGGGTAATTATGAAATGCTTTTTTTG TTTTTTTTTCGAAAAATTGCAAAGTGACCCCATCTACAATTAAGCACGAA AGAGTAAGTAGTTTTTACCTTATTGGTGTCAATTTTTAGAGCTTGAAGAG AGCAACAATAAAAGAAGTTTTGCAGAACCTTCTACATCCGTTATTACACC TTCCATCTTTGGTAATATCCCAATGCAATGTTTATTTATCACAATATCAT AAGATTGGATGATTTGTGGCAAAATATTTACGTGGGAGCTTTTTTCGTTG CCAAGGTCTTTCCATTGTTCATACAATGTCTTTCCATCGTTCATACAATG TCTTTCCATCGTTCATACAATGTGTTCCGAAAAAAAGTGGACAAATTTTT GTATGATGTAAAATCCTCATAATTTATGCCGAATTTCATGCTTTGTGTAC TTAAAGTAAAATTTTCAAAATTTGTTTGAGGACTCCAAAATACTCAAAAT GACTGAAAATCATGTCTGAGGGGGATTTGGAATAGTTTTAATCCTTGAAA ATAACTTTCAAAGGTCTCTTTAATATTTCAATCTCAAAAACCTCCGCATT CGGAAGCGATCACAAGGCTCTTCTTTCGATAGCTATCTACACGAAGGTAG GGGAGGACGTAGGGGAGGACTCCACTTACCCTTGATCCTTCTTTTAATTG TCAAGTAGAGAGGCATTAAGTAGTCTTTGGCATGACCCGACCGGGGACCT TGCGCACCGTAGCCGGATGCTCTACCATTGCACTATGGTCTCGATTCTAC CTCTTTGTTTTTAGTGTGTTTCTTTTTTACATTTTAGAGCCTGACGTGAA ACGACCCAAAGTTACAAAACCAAAAGTCAACAAAAATAGCAGTATTGTTA ATCCTGGCGTCAGAAAGTAAGTTCACTCACATATCAAACCTCCAGGGTCA CCAAAAATGGAGGATTTAAGAATCCAAATTCGAACTCTTAGTAAAAATGA GGAGGGTGAATAGCCTTTACTGACTGAAGAAACTTTACTTGGGACAAATT AGAAATGAGACAACCTGATGAGAAAGATATAAAACAAAAGACAAATTTTG GGTGCGTTTTTTTGGACTTGGAGATTTGTCACTAAAGCTGAAAGAAATAT AGAATCGAATGGCGCTTCAAATTTTATTATTGGACTTTATTATTGGATAT TATTTTTACTATTGAAACTCTTTGTAACCGTTGAGAATTTCAAAAGCCAT TTTTGCCATTGTTGAGAATTCATTTACATACTTCTAGACTAAAATAACTG TTTTTGCTTCTTATATTTTTTCGTTGTAGGAAGAAAGCAGCGAGAGGAGT AGTGTTTGATGACTGAATGAAAAAGATAAACCAGAGAGATGTAAGCACAT TCAAAATTTGTTTTGCTATAATAAGGTACATCGTTAGAATGAGGTACCCG AAGGAATTTCGCCAAAATTGTCCAAAATAAGTTCTAGCAAAACTGCTGTG CTACATTAACGAAACTTTTTCCTAGTGTAAACCATTGCGGCTCCATATTA TTCCCTTTCTCAAAATACTTTCAATGTCTTTTCATCTTCTTGTATTCAGG TACGCTTTCAGATTCTTTACCCCCGTCCTTTCAAGAGTACCAATTTGATT GGCTGATTGGAAATATCAAATATCGAAAATTTTGTCGAAGAGAAAAATGT ATTGGTAGCCAAATAGACTAAGTGGTGAGGACCTAAACTTGTTTAGGAAG AAAATTTGGCTTTGGAGAACTATGTACCTGAACTTCACTTGGATTTTATT GTTCATAATTTAATGGAAATCAAAAGCTGATGACTTTTACCATGGAATCA ATGTACAGTTTTCTGTAGACGAAAACCGAAGATCGATATCGTTGAACTGG AACGACCAGTATATTAAAAAAGTGGAAAACTTAAAAGTACCTAAAGTATT AATTCGATATTTTTTACTTTGTCTAAATGGAAATTATGACCGTATTTTAG CCAAGGAAATGGACCGTAAGGGATCGACCCTTTTCGCCTAAATCTCAACA AATTTGGCTAAACTTTCTCTGCACTGTGAGAGTCGGATTTCAACGGCCTA ATTTTCCTAATTTTGGATCGCACGTACGGTTGTTTTTTGAATCGAGAGCC CCTCCTGGAGCTTTAAAAATATCTATGAGATGCTGTCAAAAAGATCCCGT TGTAGTAATTATTCTTTTATATGTATGAAAAACCGCTCTATCGGGTATCG AAATTTTTCCTTACATTGGCCCCTAACGAAGTCTTAAGAGGTACTAAATA GGCTCTAATTGAAATCAAAGGAAATTTTAGACGATAATCAGTTTATCATT GGAAAGGTGCATACTCCTTGGACGTAATTCAAACATCGTTTCTAATTTGT ACTTTCAAACAAAGTAGGACATTTGAGTTCATACCAGAATGGACCAGGAG AAATCATTTTTAACATAGACCTATTGTATTGATTTGTAGAGGTCAAATTA AAATGTTTTTTTGCAAAAGTTGGCATTTTTGGATTCGGAATATTACCCAA TAAAAGTAATCATTTGCACTTTTAGATTATTTATTCTAAATAAACACTGT AGATTAATTAGAAACTAAGTGATATGTATCCCAAATCTCTATATATTTGG TAAGCTTTGGCACCCATGCTTTTATTTCCAATCTAGTTCGTTTTTAAAGA TTTTGGAATTACACAAAAATCATCATCATCATCATGAAGTATTTGGTTTT GATTGCTTTTATTGCTTTTGCTGCAGCACAGCCTGCTGTAAGTTCTTCAC CAATTTTTATCATAATTTTCTTTGTAACTTCTTGAAACAGATATTGTCCA AAGTCGGCTATAAGATTTTCATTGTTCCGGTGAGACAGGGCTGTTAGCTT GAATTTTTGGAGGATCAAATTATTTTCTTTTGAAAGGAAGGATAAAGTTT TTTATCCAATGTATCCCCAAATCAAGCCTTAGATTTCTCTAGACCCCTAA TGGAATTTGATGCTTCGTGCAATCGCATGTCACTTATCAAAATTTGATAT AGCTCAATTTTTGACGTTTTTGGGCAGTCTCAGAAAAAAAAAATTATTAT TCATTTTTAGCATAGCCATAACTTTTGTTCTAGTGGACCAAATTAATGAA TGACCCAAAGTTTAAGTTTATCGTTTTATCTTTTCTCTTTCCAATGGAAT AAATGTACTTCTGGTACACCCGGTACATTAGCAAAGATGAATGATTTGGA CAAGAAGGGTGTTTTTTAGATGGTTATATCAGATTTTCTTCCTTAGAATG ACAAAAGATTCTTCAATAAGATCACCAATTTTGGCAAGAATGTCGTCGAT GCTGGTAAAGGTGCAGTTGATAAAGTCACCGATTATTTTGGTGGAGATGA CAAACCCTCAGTATGTATTTATTATTTAGATATTTGCTTATTTCAAAATT GTTTCAAATTAGTTTTGTGAGGGTACCTAGATTAGGCCAAAATTGTTTGA ATGAACGAGAATATAAAAGCTCACTTTCAATGTTCATCTGTAACATGTTC TTCTTAAGCATTAATCTTTATCAACTTGTATTTCTGCGAAAACCACCTAA AAGTATTTTCTGTTATCGGTACCCAACAATAGAGAGGTTCTTGAAAAACC TCCGTATAATTCGTATTGTAATGTGTCTTTCGGCATTCTATTTTCAGCTC AAAGATAGATTGTCTGACTTGAAAGACGAATTGGAATTGATTCGAGTTCA TAACGAAAAACATATGATGAATGTCACCAACAAAACTAACCATGGTCTTA ACAGAGTTGCCAATGCTTTGGATAAACTCAATGATAATGCTATGGACAAA ATTATCTCTGTAAGTTTTTATACGCAACACCTGTTCGTTATTTTCAGACG GTAGATAATTACCGTTATTTCTCCCACCTTGTTTTTTGACTTTTAAGACT GGTGATTTTAAGTAGTTTTTTTTTGTGCTTTGACCAGCAAAATTTACCGT TGGTCCGGGCCTTAATACCGAGTTTATGGTTTATGTATCGGAGGATACTG AAGACGATGGTATAAGTGAAATCGATACAAAACAAAGTCGATAGTTGATG TACGGCTCTATATCGCCTTTGCTCACCTAAACAGACGACGGTAAGTGGAC CACCAAAGTGGACGGTGATTTTGGAGAATCAACTTTATTTAATACCGTCC TCCTCGATTTATCTCGAATACATAAACTCGCTAATAAGACACCTGTAAGA GGTTTGCAATAAAGTGGTATTTATTTTATTAAAATGCTCACGTTAATAAA TTGCCATTCTTAGGTTAATGTACATTAATTTAGCTACATGTTTTTTCTAC AAGCATAATGTTTATAAGCATATGCAGGTTCAGTTTTTGGTACCAAACAA TGGCTCTATTGTTGAGTACAATAGAATGCTAAGCATAATGCGAGCCTGAT ATAGGGGCAGACACTTTGCTTATAATTATTAAAAAACATGTAGGTATTTC CAAAATCACTTTCAACGTTTTTTGATTTAGTCTATCCATTCCCAATGTCT TGCAATCTCCTATGACGAGAAATTTTCCAGTCTCAATTCTTGTTTGAATT TCTAAATTAACTTTCCCTTCGGGTATCATCTTCTTTTTCAGGTCGAAGAT GTTTTGAACGACTTGGCTATTCGTCTTGAGGACACTTTGAACAAAGCTTC AGCTTACATGAGAGACGGTATCGATTATCTTACAGACATGCAAGAAAAAC ACAAAGAACACTTTCAAGAACACATTGATGGCCTTAAAGGAGATGTTGAA GACATCAAAGAAGATTAATTTTCTTATTTAATGATGGAAGAATGAAATAT ACAATGAAATACTCTCCCTTCAAAATAATTTCTTTTGTTGAAGTAATTTC AAAGTCATTTTTTGCTTACATACGATATCTTCTTGATAAGTATCAAATTC ATGGCTTTTTTAGAGTTTATGTTATTTGGTTGACTTTCAAAAATTTTCTA TTTGGCCAAAGCCTCCTTTAC

Coding sequence (CDS) from alignment at sc0000002:1174689..1184409-

>TCONS_00000583 ID=TCONS_00000583|Name=TCONS_00000583|organism=Clytia hemisphaerica|type=CDS|length=4347bp|location=Sequence derived from alignment at sc0000002:1174689..1184409- (Clytia hemisphaerica)
GAAGAAAGCAGCGAGAGGAGTAGTGTTTGATGACTGAAGCCTGACGTGAA
ACGACCCAAAGTTACAAAACCAAAAGTCAACAAAAATAGCAGTATTGTTA
ATCCTGGCGTCAGAAAAGCTTGAAGAGAGCAACAATAAAAGAAGTTTTGC
AGAACCTTCTACATCCGTTATTACACCTTCCATCTTTGGAGCTGTTTCCA
AAGCAACACAGTGAAAGCTACCATATTTGATGAGTACGTCATAACACGTT
TTGAAAAGGACAGTCTCTCATTAACGTTGAAATGCCACAGTACAACAGCA
GTGGAACGAAAGACTATCTTACAATACTCCTATCTCAAAATGGCCGACGA
ACTAGAAAAATATAAAGCAAGAGTCAAAGGTAGCTGATGGGGGATTCTCA
GACAGAAATTCTTTGTTGGATCATATCAGCACATGTGATGGATGCAATGT
TTTCACCTACACACTTTCTGATGGCAACATTACTGACTTGATGAGTACAC
ATACTAAATCAATAGAAGAAGAACTAAAAAATCTTTATTGTTATCTGGAA
ATCGATGGAGATACCAAATTAACCGTTTTCACCAAAACTGATGATGGTGA
CGACAAATCTGTCATGATGTGGAAGAAAGCAGCGAGAGGAGTAGTGTTTG
ATGACTGAAGCCTGACGTGAAACGACCCAAAGTTACAAAACCAAAAGTCA
ACAAAAATAGCAGTATTGTTAATCCTGGCGTCAGAAAAGCTTGAAGAGAG
CAACAATAAAAGAAGTTTTGCAGAACCTTCTACATCCGTTATTACACCTT
CCATCTTTGGAGCTGTTTCCAAAGCAACACAGTGAAAGCTACCATATTTG
ATGAGTACGTCATAACACGTTTTGAAAAGGACAGTCTCTCATTAACGTTG
AAATGCCACAGTACAACAGCAGTGGAACGAAAGACTATCTTACAATACTC
CTATCTCAAAATGGCCGACGAACTAGAAAAATATAAAGCAAGAGTCAAAG
GTAGCTGATGGGGGATTCTCAGACAGAAATTCTTTGTTGGATCATATCAG
CACATGTGATGGATGCAATGTTTTCACCTACACACTTTCTGATGGCAACA
TTACTGACTTGATGAGTACACATACTAAATCAATAGAAGAAGAACTAAAA
AATCTTTATTGTTATCTGGAAATCGATGGAGATACCAAATTAACCGTTTT
CACCAAAACTGATGATGGTGACGACAAATCTGTCATGATGTGGAAGAAAG
CAGCGAGAGGAGTAGTGTTTGATGACTGAAGCCTGACGTGAAACGACCCA
AAGTTACAAAACCAAAAGTCAACAAAAATAGCAGTATTGTTAATCCTGGC
GTCAGAAAAGCTTGAAGAGAGCAACAATAAAAGAAGTTTTGCAGAACCTT
CTACATCCGTTATTACACCTTCCATCTTTGGAGCTGTTTCCAAAGCAACA
CAGTGAAAGCTACCATATTTGATGAGTACGTCATAACACGTTTTGAAAAG
GACAGTCTCTCATTAACGTTGAAATGCCACAGTACAACAGCAGTGGAACG
AAAGACTATCTTACAATACTCCTATCTCAAAATGGCCGACGAACTAGAAA
AATATAAAGCAAGAGTCAAAGGTAGCTGATGGGGGATTCTCAGACAGAAA
TTCTTTGTTGGATCATATCAGCACATGTGATGGATGCAATGTTTTCACCT
ACACACTTTCTGATGGCAACATTACTGACTTGATGAGTACACATACTAAA
TCAATAGAAGAAGAACTAAAAAATCTTTATTGTTATCTGGAAATCGATGG
AGATACCAAATTAACCGTTTTCACCAAAACTGATGATGGTGACGACAAAT
CTGTCATGATGTGGAAGAAAGCAGCGAGAGGAGTAGTGTTTGATGACTGA
AGCCTGACGTGAAACGACCCAAAGTTACAAAACCAAAAGTCAACAAAAAT
AGCAGTATTGTTAATCCTGGCGTCAGAAAAGCTTGAAGAGAGCAACAATA
AAAGAAGTTTTGCAGAACCTTCTACATCCGTTATTACACCTTCCATCTTT
GGAGCTGTTTCCAAAGCAACACAGTGAAAGCTACCATATTTGATGAGTAC
GTCATAACACGTTTTGAAAAGGACAGTCTCTCATTAACGTTGAAATGCCA
CAGTACAACAGCAGTGGAACGAAAGACTATCTTACAATACTCCTATCTCA
AAATGGCCGACGAACTAGAAAAATATAAAGCAAGAGTCAAAGGTAGCTGA
TGGGGGATTCTCAGACAGAAATTCTTTGTTGGATCATATCAGCACATGTG
ATGGATGCAATGTTTTCACCTACACACTTTCTGATGGCAACATTACTGAC
TTGATGAGTACACATACTAAATCAATAGAAGAAGAACTAAAAAATCTTTA
TTGTTATCTGGAAATCGATGGAGATACCAAATTAACCGTTTTCACCAAAA
CTGATGATGGTGACGACAAATCTGTCATGATGTGGAAGAAAGCAGCGAGA
GGAGTAGTGTTTGATGACTGAAGCCTGACGTGAAACGACCCAAAGTTACA
AAACCAAAAGTCAACAAAAATAGCAGTATTGTTAATCCTGGCGTCAGAAA
AGCTTGAAGAGAGCAACAATAAAAGAAGTTTTGCAGAACCTTCTACATCC
GTTATTACACCTTCCATCTTTGGAGCTGTTTCCAAAGCAACACAGTGAAA
GCTACCATATTTGATGAGTACGTCATAACACGTTTTGAAAAGGACAGTCT
CTCATTAACGTTGAAATGCCACAGTACAACAGCAGTGGAACGAAAGACTA
TCTTACAATACTCCTATCTCAAAATGGCCGACGAACTAGAAAAATATAAA
GCAAGAGTCAAAGGTAGCTGATGGGGGATTCTCAGACAGAAATTCTTTGT
TGGATCATATCAGCACATGTGATGGATGCAATGTTTTCACCTACACACTT
TCTGATGGCAACATTACTGACTTGATGAGTACACATACTAAATCAATAGA
AGAAGAACTAAAAAATCTTTATTGTTATCTGGAAATCGATGGAGATACCA
AATTAACCGTTTTCACCAAAACTGATGATGGTGACGACAAATCTGTCATG
ATGTGGAAGAAAGCAGCGAGAGGAGTAGTGTTTGATGACTGAAGCCTGAC
GTGAAACGACCCAAAGTTACAAAACCAAAAGTCAACAAAAATAGCAGTAT
TGTTAATCCTGGCGTCAGAAAAGCTTGAAGAGAGCAACAATAAAAGAAGT
TTTGCAGAACCTTCTACATCCGTTATTACACCTTCCATCTTTGGAGCTGT
TTCCAAAGCAACACAGTGAAAGCTACCATATTTGATGAGTACGTCATAAC
ACGTTTTGAAAAGGACAGTCTCTCATTAACGTTGAAATGCCACAGTACAA
CAGCAGTGGAACGAAAGACTATCTTACAATACTCCTATCTCAAAATGGCC
GACGAACTAGAAAAATATAAAGCAAGAGTCAAAGGTAGCTGATGGGGGAT
TCTCAGACAGAAATTCTTTGTTGGATCATATCAGCACATGTGATGGATGC
AATGTTTTCACCTACACACTTTCTGATGGCAACATTACTGACTTGATGAG
TACACATACTAAATCAATAGAAGAAGAACTAAAAAATCTTTATTGTTATC
TGGAAATCGATGGAGATACCAAATTAACCGTTTTCACCAAAACTGATGAT
GGTGACGACAAATCTGTCATGATGTGGAAGAAAGCAGCGAGAGGAGTAGT
GTTTGATGACTGAAGCCTGACGTGAAACGACCCAAAGTTACAAAACCAAA
AGTCAACAAAAATAGCAGTATTGTTAATCCTGGCGTCAGAAAAGCTTGAA
GAGAGCAACAATAAAAGAAGTTTTGCAGAACCTTCTACATCCGTTATTAC
ACCTTCCATCTTTGGAGCTGTTTCCAAAGCAACACAGTGAAAGCTACCAT
ATTTGATGAGTACGTCATAACACGTTTTGAAAAGGACAGTCTCTCATTAA
CGTTGAAATGCCACAGTACAACAGCAGTGGAACGAAAGACTATCTTACAA
TACTCCTATCTCAAAATGGCCGACGAACTAGAAAAATATAAAGCAAGAGT
CAAAGGTAGCTGATGGGGGATTCTCAGACAGAAATTCTTTGTTGGATCAT
ATCAGCACATGTGATGGATGCAATGTTTTCACCTACACACTTTCTGATGG
CAACATTACTGACTTGATGAGTACACATACTAAATCAATAGAAGAAGAAC
TAAAAAATCTTTATTGTTATCTGGAAATCGATGGAGATACCAAATTAACC
GTTTTCACCAAAACTGATGATGGTGACGACAAATCTGTCATGATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000345XLOC_000345Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000583-proteinTCONS_00000583-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000583-exon-sc0000002-1575043694:1184274..1184409TCONS_00000583-exon-sc0000002-1575043694:1184274..1184409Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1183659..1183719TCONS_00000583-exon-sc0000002-1575043694:1183659..1183719Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1183250..1183299TCONS_00000583-exon-sc0000002-1575043694:1183250..1183299Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1180384..1180574TCONS_00000583-exon-sc0000002-1575043694:1180384..1180574Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1179499..1179570TCONS_00000583-exon-sc0000002-1575043694:1179499..1179570Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1178794..1178872TCONS_00000583-exon-sc0000002-1575043694:1178794..1178872Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1178320..1178380TCONS_00000583-exon-sc0000002-1575043694:1178320..1178380Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1177155..1178110TCONS_00000583-exon-sc0000002-1575043694:1177155..1178110Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1176923..1177023TCONS_00000583-exon-sc0000002-1575043694:1176923..1177023Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1176300..1176413TCONS_00000583-exon-sc0000002-1575043694:1176300..1176413Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1175851..1176012TCONS_00000583-exon-sc0000002-1575043694:1175851..1176012Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1575043694:1174689..1175068TCONS_00000583-exon-sc0000002-1575043694:1174689..1175068Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1184274..1184409TCONS_00000583-exon-sc0000002-1510915933:1184274..1184409Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1183659..1183719TCONS_00000583-exon-sc0000002-1510915933:1183659..1183719Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1183250..1183299TCONS_00000583-exon-sc0000002-1510915933:1183250..1183299Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1180384..1180574TCONS_00000583-exon-sc0000002-1510915933:1180384..1180574Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1179499..1179570TCONS_00000583-exon-sc0000002-1510915933:1179499..1179570Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1178794..1178872TCONS_00000583-exon-sc0000002-1510915933:1178794..1178872Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1178320..1178380TCONS_00000583-exon-sc0000002-1510915933:1178320..1178380Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1177155..1178110TCONS_00000583-exon-sc0000002-1510915933:1177155..1178110Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1176923..1177023TCONS_00000583-exon-sc0000002-1510915933:1176923..1177023Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1176300..1176413TCONS_00000583-exon-sc0000002-1510915933:1176300..1176413Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1175851..1176012TCONS_00000583-exon-sc0000002-1510915933:1175851..1176012Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1510915933:1174689..1175068TCONS_00000583-exon-sc0000002-1510915933:1174689..1175068Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1184274..1184409TCONS_00000583-exon-sc0000002-1491911889:1184274..1184409Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1183659..1183719TCONS_00000583-exon-sc0000002-1491911889:1183659..1183719Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1183250..1183299TCONS_00000583-exon-sc0000002-1491911889:1183250..1183299Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1180384..1180574TCONS_00000583-exon-sc0000002-1491911889:1180384..1180574Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1179499..1179570TCONS_00000583-exon-sc0000002-1491911889:1179499..1179570Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1178794..1178872TCONS_00000583-exon-sc0000002-1491911889:1178794..1178872Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1178320..1178380TCONS_00000583-exon-sc0000002-1491911889:1178320..1178380Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1177155..1178110TCONS_00000583-exon-sc0000002-1491911889:1177155..1178110Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1176923..1177023TCONS_00000583-exon-sc0000002-1491911889:1176923..1177023Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1176300..1176413TCONS_00000583-exon-sc0000002-1491911889:1176300..1176413Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1175851..1176012TCONS_00000583-exon-sc0000002-1491911889:1175851..1176012Clytia hemisphaericaexon
TCONS_00000583-exon-sc0000002-1491911889:1174689..1175068TCONS_00000583-exon-sc0000002-1491911889:1174689..1175068Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1174689..1184409 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.73178 5.38059 6.32198 5.6742 1.02173 0.596764 0.995253 1.24893 1.59614 1.35817 1.63532 1.84285 138.208 113.976 2.16044 3.01102 8.5191 11.5072 359.33 407.196 98.3831 93.6298 35.1448 38.5447 33.1925 38.2249 1.26473 1.13283 1.84639 2.17919
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027873PAXX
Vocabulary: Biological Process
TermDefinition
GO:0006303double-strand break repair via nonhomologous end joining
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006303 double-strand break repair via nonhomologous end joining
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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