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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000579 ID=TCONS_00000579|Name=TCONS_00000579|organism=Clytia hemisphaerica|type=transcript|length=655bp
CATATGGTAGCTGGAAATCATGGGATCATTGTCCATCTGGCAGTTGGGTA
GTTAGTTTCCAGACCAAAGTTGAGAGCGACCAAGGGGGTGGATCCATTCA
TTTCACCGATGACTCTGCATTGAATGCTATCTTGATGACATGCAGTGATC
GTTTATTCACCAAGATCTCCAGTGGACAACAAGTCTGGGGAGAATGGAGA
GGTGAATCAAACACGTGCCAAAATGGATTCTCAAGATTTACGCTGAAAAT
CGAAGAAGAACAGGGTGGTAATCTTTTCCAAGACGACTCGACTACCAACG
CTATCCGGATGTGGTGCACAGAAAATGAAACATGGTACAAGAGCGGTGAG
GGGGACTGGGGAGAATGGACGCCTACTGAGTATTGTCCAACAGGTTACCG
CATTACTGGCATCAAAACACAAATCGAATCCAACCAAGGAGGTGGTGATG
ACTCAGCTCTTAATGGCGTTCAGTTGATTTGCAAATACTTTGGCAATTAA
TTCATGATCTTCACTGCAATGGTATTAGTATATCGCTTGGTTATCCGATC
TTATCTTCAAGggtttatattttattttctcataatATTCTTTTTAGTTT
TATACTTCTGAAGGTATTAATTTGtataattgataaatttttcctACCGA
AGAAT Run BLAST on NCBI protein sequence of TCONS_00000579-protein >TCONS_00000579-protein ID=TCONS_00000579-protein|Name=TCONS_00000579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
YGSWKSWDHCPSGSWVVSFQTKVESDQGGGSIHFTDDSALNAILMTCSDR
LFTKISSGQQVWGEWRGESNTCQNGFSRFTLKIEEEQGGNLFQDDSTTNA
IRMWCTENETWYKSGEGDWGEWTPTEYCPTGYRITGIKTQIESNQGGGDD
SALNGVQLICKYFGN Run BLAST on NCBI transcript from alignment at sc0000002:1118147..1119306- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000579 ID=TCONS_00000579|Name=TCONS_00000579|organism=Clytia hemisphaerica|type=transcript|length=1160bp|location=Sequence derived from alignment at sc0000002:1118147..1119306- (Clytia hemisphaerica)
CATATGGTAGCTGGAAATCATGGGATCATTGTCCATCTGGCAGTTGGGTA
GTTAGTTTCCAGACCAAAGTTGAGAGCGACCAAGGGGGTGGATCCATTCA
TTTCACCGATGACTCTGCATTGAATGCTATCTTGATGACATGCAGTGATC
GTTTATTCACCAAGATCTCCAGTGGACAACAAGTCTGGGGAGAATGGAGA
GGTGAATCAAACACGTGCCAAAATGGATTCTCAAGATTTACGCTGAAAAT
CGAAGAAGAACAGGTTTGCCTTCATTCTTTTTCCTTCATTCTTTCCCTTC
GCCATCTTTAACGGGTATTTTTGAGTTTTAAGCTTTGAATTTTACTGAGT
GGTAGTTTTCTTTACCGAATTGGACAATGAAGGTTTTGTTTTTTGGAAAT
CAGTGGGTGCACATGGGATCCCTTTGACATCCTGGAGCCGTGAAGACATT
TTAAAATCATTTTATATCAACAGTTGTCATTACATTCTGTGTATAGATAT
GTACATTTAATGGGAACGTTGCCCTTCCTAAAAAGGGTGGCAATCACAAG
AATCCTGGGGTCAGTAGAGATTTCCGTTTAGAGGAGGGTAGGCATTAAGG
GAAGGGTTTTTAGCCTTAAAATGAAGTGAGAAACTATTGAGTCATGTTTG
CCACCATAAAAACTCTACGAAGAGAAGGCGGTTCTCTCTGGGACATGCAC
ATTTTACAAATGGGTATTAAGAAGGATTAGGATACTATGTGATATTTTTT
AATTTAATCTTCCTCCAGGGTGGTAATCTTTTCCAAGACGACTCGACTAC
CAACGCTATCCGGATGTGGTGCACAGAAAATGAAACATGGTACAAGAGCG
GTGAGGGGGACTGGGGAGAATGGACGCCTACTGAGTATTGTCCAACAGGT
TACCGCATTACTGGCATCAAAACACAAATCGAATCCAACCAAGGAGGTGG
TGATGACTCAGCTCTTAATGGCGTTCAGTTGATTTGCAAATACTTTGGCA
ATTAATTCATGATCTTCACTGCAATGGTATTAGTATATCGCTTGGTTATC
CGATCTTATCTTCAAGGGTTTATATTTTATTTTCTCATAATATTCTTTTT
AGTTTTATACTTCTGAAGGTATTAATTTGTATAATTGATAAATTTTTCCT
ACCGAAGAAT Coding sequence (CDS) from alignment at sc0000002:1118147..1119306- >TCONS_00000579 ID=TCONS_00000579|Name=TCONS_00000579|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000002:1118147..1119306- (Clytia hemisphaerica)
GGTGGTAATCTTTTCCAAGACGACTCGACTACCAACGCTATCCGGATGTG
GTGCACAGAAAATGAAACATGGTACAAGAGCGGTGAGGGGGACTGGGGAG
AATGGACGCCTACTGAGTATTGTCCAACAGGTTACCGCATTACTGGCATC
AAAACACAAATCGAATCCAACCAAGGAGGTGGTGATGACTCAGCTCTTAA
TGGCGTTCAGTTGATTTGCAAATACTTTGGCAATTAATATGGTAGCTGGA
AATCATGGGATCATTGTCCATCTGGCAGTTGGGTAGTTAGTTTCCAGACC
AAAGTTGAGAGCGACCAAGGGGGTGGATCCATTCATTTCACCGATGACTC
TGCATTGAATGCTATCTTGATGACATGCAGTGATCGTTTATTCACCAAGA
TCTCCAGTGGACAACAAGTCTGGGGAGAATGGAGAGGTGAATCAAACACG
TGCCAAAATGGATTCTCAAGATTTACGCTGAAAATCGAAGAAGAACAGGG
TGGTAATCTTTTCCAAGACGACTCGACTACCAACGCTATCCGGATGTGGT
GCACAGAAAATGAAACATGGTACAAGAGCGGTGAGGGGGACTGGGGAGAA
TGGACGCCTACTGAGTATTGTCCAACAGGTTACCGCATTACTGGCATCAA
AACACAAATCGAATCCAACCAAGGAGGTGGTGATGACTCAGCTCTTAATG
GCGTTCAGTTGATTTGCAAATACTTTGGCAATTAATATGGTAGCTGGAAA
TCATGGGATCATTGTCCATCTGGCAGTTGGGTAGTTAGTTTCCAGACCAA
AGTTGAGAGCGACCAAGGGGGTGGATCCATTCATTTCACCGATGACTCTG
CATTGAATGCTATCTTGATGACATGCAGTGATCGTTTATTCACCAAGATC
TCCAGTGGACAACAAGTCTGGGGAGAATGGAGAGGTGAATCAAACACGTG
CCAAAATGGATTCTCAAGATTTACGCTGAAAATCGAAGAAGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000579-exon-sc0000002-1575043694:1119044..1119306 | TCONS_00000579-exon-sc0000002-1575043694:1119044..1119306 | Clytia hemisphaerica | exon |
| TCONS_00000579-exon-sc0000002-1575043694:1118147..1118538 | TCONS_00000579-exon-sc0000002-1575043694:1118147..1118538 | Clytia hemisphaerica | exon |
| TCONS_00000579-exon-sc0000002-1510915933:1119044..1119306 | TCONS_00000579-exon-sc0000002-1510915933:1119044..1119306 | Clytia hemisphaerica | exon |
| TCONS_00000579-exon-sc0000002-1510915933:1118147..1118538 | TCONS_00000579-exon-sc0000002-1510915933:1118147..1118538 | Clytia hemisphaerica | exon |
| TCONS_00000579-exon-sc0000002-1491911889:1119044..1119306 | TCONS_00000579-exon-sc0000002-1491911889:1119044..1119306 | Clytia hemisphaerica | exon |
| TCONS_00000579-exon-sc0000002-1491911889:1118147..1118538 | TCONS_00000579-exon-sc0000002-1491911889:1118147..1118538 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1118147..1119306 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005515 | VOMI |
Blast
The following BLAST results are available for this feature:
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