TCONS_00000570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000570
Unique NameTCONS_00000570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000570 ID=TCONS_00000570|Name=TCONS_00000570|organism=Clytia hemisphaerica|type=transcript|length=1368bp
ATTGTGTTGTGATAACTCTTAACAAAATCTAATCGCAATATTGGCGAGGc
tgaaaaataattattgaaaTGATTTTAGCGATATTCTTGACCCAATTTCT
ATCAGTTTTTTGCAGTTGGTATAATGCCGAACATTTTAATCCAATCATTA
CAAACGCGGAAAATTCATCTATATCCATCCCTGCCCGATCGTCAATCGAA
TGTGTTCTAAAATGTAAAGTGAAATCGGGGACAAGTTATTTTGTGGAAAC
GGAAcacaaatgtttttgtttgaaggAAGAGGAAGAAGAAATATATTTGC
CTAATGAAGATGACGAAGACTTTAATGggaaaatctttaaagaaatccAA
CATACTGACATCTGTTACGAAGAGATGGTGTTTGGGTCGTGTCAAGAAGT
GAAAGAGAAATGTCCAACGTGTGCATCAGGATTTTATTGGTATGAAGCCG
AACCCTTCAGTGAAAGTCGAACCAAAATGTTTTGTGATTTCAATAATGTT
GACGGGAAAGCAACTTGCAAAAGTATCAGAGAAAATTGTCAGGATTGTGT
GTCCGATTTTTATGCCATTGAAGTTGAAGACAAGCCGATTGAAGTATATT
GTGATTTATCGACGGATGGAGgtgGTTGGCTGGCTATTTTAAATATCACG
TACAACGATGATGCCAGCAGGGTTGACATTAGCAACAATGTACTCCATAA
CCCTTCCCCGATTGACCAATTACCAAATATCCGAACCGGTAAGTTTGCTT
TGACCCAAGAAGGTTTGACCAAATTGCTTGAAAGTGGTAAATACACCGAA
TTTAGAGTATGGTGCACAAAGCCATGGCATAATCGAATTTTGCATACAGT
TTTGAGTGGTTCTAAAGCTATGGACAATCTGAAATATCGAGCTAATACTA
TCCAGAACTTATGTGGTAACTTTAGATTTCTGGATGATGATAATTCGAGA
TTTAGTCAAATAAATTGCGCTAATTGGCGAATGGGAAGACACATCTATTT
TGATCATTTGTTTTGGGTTGATTGGCAAACACATGTTGTCTTAAGCAGTC
AGAGATTCGAATGTGACGATAGTGTTAACGATGAAAAAGACAAAGGAACG
TGGCGTTTCTTCGTGCGGTAAAACCAATCATTTGCGCATTAAGACACAAA
ATTAGCAATTTGATTGCTTTGACTTGGCTGTGACCTCTTCGTACGGGTGA
GAGTAGAActtgtatttttcaagttttaatgtATATTTTACAGACTCATA
CATACTAACATATACCAACCTATCAGGGTTAGTCCCGATCCTAGAAGTGC
CCCTAACAGGGTCTTCAGCCCTTTATTTCCATACCAATGCTACTCCAAAC
gctattgtgactctcgag
Run BLAST on NCBI

protein sequence of TCONS_00000570-protein

>TCONS_00000570-protein ID=TCONS_00000570-protein|Name=TCONS_00000570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MILAIFLTQFLSVFCSWYNAEHFNPIITNAENSSISIPARSSIECVLKCK
VKSGTSYFVETEHKCFCLKEEEEEIYLPNEDDEDFNGKIFKEIQHTDICY
EEMVFGSCQEVKEKCPTCASGFYWYEAEPFSESRTKMFCDFNNVDGKATC
KSIRENCQDCVSDFYAIEVEDKPIEVYCDLSTDGGGWLAILNITYNDDAS
RVDISNNVLHNPSPIDQLPNIRTGKFALTQEGLTKLLESGKYTEFRVWCT
KPWHNRILHTVLSGSKAMDNLKYRANTIQNLCGNFRFLDDDNSRFSQINC
ANWRMGRHIYFDHLFWVDWQTHVVLSSQRFECDDSVNDEKDKGTWRFFVR
Run BLAST on NCBI

transcript from alignment at sc0000002:1025783..1028054-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000570 ID=TCONS_00000570|Name=TCONS_00000570|organism=Clytia hemisphaerica|type=transcript|length=2272bp|location=Sequence derived from alignment at sc0000002:1025783..1028054- (Clytia hemisphaerica)
ATTGTGTTGTGATAACTCTTAACAAAATCTAATCGCAATATTGGCGAGGC
TGAAAAATAATTATTGAAATGATTTTAGCGATATTCTTGACCCAATTTCT
ATCAGTTTTTTGCAGTTGGTATAATGCCGAACATTTTAATCCAATCATTA
CAAACGCGGAAAATTCATCTATATCCATCCCTGCCCGATCGTCAATCGAA
TGTGTTCTAAAATGTAAAGTGAAATCGGGGACAAGTTATTTTGTGGAAAC
GGAACACAAATGTTTTTGTTTGAAGGAAGAGGAAGAAGAAATATATTTGC
CTAATGAAGATGACGAAGACTTTAATGGGAAAATCTTTAAAGAAATCCAA
CATACTGACATCTGTTACGAAGAGATGGTAAGTTATCCACCTAGTAGCAT
TTTTATACAATGTGATACTCATGGGTAGAATGGGACAGGGCGAAAAATTT
TTCTTGCTAATTCGAACTTCTTTTGCTCGAATCTTCCTAAAGTTAGAACT
TAATTTCCCATCAAGAGTACACTTTCCGCAATACTATCTACAATTTGAAT
CTTACTGTAATTCGAACAAATTAAACTTCCCCATGGAATTCGAAGTAGGG
AGAGTTTTATAGTTGATATTTATTTAAGGTGTTTGGGTCGTGTCAAGAAG
TGAAAGAGAAATGTCCAACGTGTGCATCAGGATTTTATTGGTATGAAGCC
GAACCCTTCAGTGAAAGTCGAACCAAAATGTTTTGTGATTTCAATAATGT
TGACGGGAAAGCAACTTGCAAAAGTATCAGAGAAAATTGTCAGGATTGTG
TGTCCGATTTTTATGCCATTGAAGTTGAAGACAAGCCGATTGAAGTATAT
TGTGATTTATCGACGGATGGAGGTAACAAATTCATATTTTTTGCATACAA
ATCTACGTATCTTGGGTTATTTCAAAGTTCACATAAAAATTAAGTTTCTT
TCTGTGTGCACATGACGTTATGTATCCTGAGTATCAGAGGTTGAGTTTTC
AACGAATATATGTATCAACCTCTGAGGACCAAGTAAAGAAATTTTATCGC
GCATGTGTCAATCTAATCACTGTAGAAAGAATCAAAGATGAAGAGAAAAT
ATTACCATATTAATGTCTATTGTATCAATATACATGTTTACTATTGACGA
ATTCAGTGTAAAGTGTAATTAAAATGAGTTTATTTCAAAAGATATCTTCT
ACATGATTCCCAAATGTATGACAGTAATTACTAAACCATTAATTATGGTA
ATGTTACTTCAATGGAATCGAAATAATATATGGTTCTCTATCACTGATTC
TTTCTAAAAAGCGTTGATGACATTTCTGAGTTATGTTTTCAACGACGCGA
AAAAATATCAACTTTGAACTTAATCCAAGATCTTGGATTGTCGTCATGTT
ACTTTTCTCTGCGTTGATTGCGCGCTGAATAAGATCTGGATTGGTCGGCA
CAGGTTGATATATGATTTCGGCCTGTGCTTTTCACGGTAGACGTTATGGC
CATTGAATTTATTTTTTTCTTTTAGGTGGTTGGCTGGCTATTTTAAATAT
CACGTACAACGATGATGCCAGCAGGGTTGACATTAGCAACAATGTACTCC
ATAACCCTTCCCCGATTGACCAATTACCAAATATCCGAACCGGTAAGTTT
GCTTTGACCCAAGAAGGTTTGACCAAATTGCTTGAAAGTGGTAAATACAC
CGAATTTAGAGTATGGTGCACAAAGCCATGGCATAATCGAATTTTGCATA
CAGTTTTGAGTGGTTCTAAAGCTATGGACAATCTGAAATATCGAGCTAAT
ACTATCCAGAACTTATGTGGTAACTTTAGATTTCTGGATGATGATAATTC
GAGATTTAGTCAAATAAATTGCGCTAATTGGCGAATGGGAAGACACATCT
ATTTTGATCATTTGTTTTGGGTTGATTGGCAAACACATGTTGTCTTAAGC
AGTCAGAGATTCGAATGTGACGATAGTGTTAACGATGAAAAAGACAAAGG
AACGTGGCGTTTCTTCGTGCGGTAAAACCAATCATTTGCGCATTAAGACA
CAAAATTAGCAATTTGATTGCTTTGACTTGGCTGTGACCTCTTCGTACGG
GTGAGAGTAGAACTTGTATTTTTCAAGTTTTAATGTATATTTTACAGACT
CATACATACTAACATATACCAACCTATCAGGGTTAGTCCCGATCCTAGAA
GTGCCCCTAACAGGGTCTTCAGCCCTTTATTTCCATACCAATGCTACTCC
AAACGCTATTGTGACTCTCGAG

Coding sequence (CDS) from alignment at sc0000002:1025783..1028054-

>TCONS_00000570 ID=TCONS_00000570|Name=TCONS_00000570|organism=Clytia hemisphaerica|type=CDS|length=3159bp|location=Sequence derived from alignment at sc0000002:1025783..1028054- (Clytia hemisphaerica)
GTGGTTGGCTGGCTATTTTAAATATCACGTACAACGATGATGCCAGCAGG
GTTGACATTAGCAACAATGTACTCCATAACCCTTCCCCGATTGACCAATT
ACCAAATATCCGAACCGGTAAGTTTGCTTTGACCCAAGAAGGTTTGACCA
AATTGCTTGAAAGTGGTAAATACACCGAATTTAGAGTATGGTGCACAAAG
CCATGGCATAATCGAATTTTGCATACAGTTTTGAGTGGTTCTAAAGCTAT
GGACAATCTGAAATATCGAGCTAATACTATCCAGAACTTATGTGGTAACT
TTAGATTTCTGGATGATGATAATTCGAGATTTAGTCAAATAAATTGCGCT
AATTGGCGAATGGGAAGACACATCTATTTTGATCATTTGTTTTGGGTTGA
TTGGCAAACACATGTTGTCTTAAGCAGTCAGAGATTCGAATGTGACGATA
GTGTTAACGATGAAAAAGACAAAGGAACGTGGCGTTTCTTCGTGCGGTAA
GTGTTTGGGTCGTGTCAAGAAGTGAAAGAGAAATGTCCAACGTGTGCATC
AGGATTTTATTGGTATGAAGCCGAACCCTTCAGTGAAAGTCGAACCAAAA
TGTTTTGTGATTTCAATAATGTTGACGGGAAAGCAACTTGCAAAAGTATC
AGAGAAAATTGTCAGGATTGTGTGTCCGATTTTTATGCCATTGAAGTTGA
AGACAAGCCGATTGAAGTATATTGTGATTTATCGACGGATGGAGATGATT
TTAGCGATATTCTTGACCCAATTTCTATCAGTTTTTTGCAGTTGGTATAA
TGCCGAACATTTTAATCCAATCATTACAAACGCGGAAAATTCATCTATAT
CCATCCCTGCCCGATCGTCAATCGAATGTGTTCTAAAATGTAAAGTGAAA
TCGGGGACAAGTTATTTTGTGGAAACGGAACACAAATGTTTTTGTTTGAA
GGAAGAGGAAGAAGAAATATATTTGCCTAATGAAGATGACGAAGACTTTA
ATGGGAAAATCTTTAAAGAAATCCAACATACTGACATCTGTTACGAAGAG
ATGGTGGTTGGCTGGCTATTTTAAATATCACGTACAACGATGATGCCAGC
AGGGTTGACATTAGCAACAATGTACTCCATAACCCTTCCCCGATTGACCA
ATTACCAAATATCCGAACCGGTAAGTTTGCTTTGACCCAAGAAGGTTTGA
CCAAATTGCTTGAAAGTGGTAAATACACCGAATTTAGAGTATGGTGCACA
AAGCCATGGCATAATCGAATTTTGCATACAGTTTTGAGTGGTTCTAAAGC
TATGGACAATCTGAAATATCGAGCTAATACTATCCAGAACTTATGTGGTA
ACTTTAGATTTCTGGATGATGATAATTCGAGATTTAGTCAAATAAATTGC
GCTAATTGGCGAATGGGAAGACACATCTATTTTGATCATTTGTTTTGGGT
TGATTGGCAAACACATGTTGTCTTAAGCAGTCAGAGATTCGAATGTGACG
ATAGTGTTAACGATGAAAAAGACAAAGGAACGTGGCGTTTCTTCGTGCGG
TAAGTGTTTGGGTCGTGTCAAGAAGTGAAAGAGAAATGTCCAACGTGTGC
ATCAGGATTTTATTGGTATGAAGCCGAACCCTTCAGTGAAAGTCGAACCA
AAATGTTTTGTGATTTCAATAATGTTGACGGGAAAGCAACTTGCAAAAGT
ATCAGAGAAAATTGTCAGGATTGTGTGTCCGATTTTTATGCCATTGAAGT
TGAAGACAAGCCGATTGAAGTATATTGTGATTTATCGACGGATGGAGATG
ATTTTAGCGATATTCTTGACCCAATTTCTATCAGTTTTTTGCAGTTGGTA
TAATGCCGAACATTTTAATCCAATCATTACAAACGCGGAAAATTCATCTA
TATCCATCCCTGCCCGATCGTCAATCGAATGTGTTCTAAAATGTAAAGTG
AAATCGGGGACAAGTTATTTTGTGGAAACGGAACACAAATGTTTTTGTTT
GAAGGAAGAGGAAGAAGAAATATATTTGCCTAATGAAGATGACGAAGACT
TTAATGGGAAAATCTTTAAAGAAATCCAACATACTGACATCTGTTACGAA
GAGATGGTGGTTGGCTGGCTATTTTAAATATCACGTACAACGATGATGCC
AGCAGGGTTGACATTAGCAACAATGTACTCCATAACCCTTCCCCGATTGA
CCAATTACCAAATATCCGAACCGGTAAGTTTGCTTTGACCCAAGAAGGTT
TGACCAAATTGCTTGAAAGTGGTAAATACACCGAATTTAGAGTATGGTGC
ACAAAGCCATGGCATAATCGAATTTTGCATACAGTTTTGAGTGGTTCTAA
AGCTATGGACAATCTGAAATATCGAGCTAATACTATCCAGAACTTATGTG
GTAACTTTAGATTTCTGGATGATGATAATTCGAGATTTAGTCAAATAAAT
TGCGCTAATTGGCGAATGGGAAGACACATCTATTTTGATCATTTGTTTTG
GGTTGATTGGCAAACACATGTTGTCTTAAGCAGTCAGAGATTCGAATGTG
ACGATAGTGTTAACGATGAAAAAGACAAAGGAACGTGGCGTTTCTTCGTG
CGGTAAGTGTTTGGGTCGTGTCAAGAAGTGAAAGAGAAATGTCCAACGTG
TGCATCAGGATTTTATTGGTATGAAGCCGAACCCTTCAGTGAAAGTCGAA
CCAAAATGTTTTGTGATTTCAATAATGTTGACGGGAAAGCAACTTGCAAA
AGTATCAGAGAAAATTGTCAGGATTGTGTGTCCGATTTTTATGCCATTGA
AGTTGAAGACAAGCCGATTGAAGTATATTGTGATTTATCGACGGATGGAG
ATGATTTTAGCGATATTCTTGACCCAATTTCTATCAGTTTTTTGCAGTTG
GTATAATGCCGAACATTTTAATCCAATCATTACAAACGCGGAAAATTCAT
CTATATCCATCCCTGCCCGATCGTCAATCGAATGTGTTCTAAAATGTAAA
GTGAAATCGGGGACAAGTTATTTTGTGGAAACGGAACACAAATGTTTTTG
TTTGAAGGAAGAGGAAGAAGAAATATATTTGCCTAATGAAGATGACGAAG
ACTTTAATGGGAAAATCTTTAAAGAAATCCAACATACTGACATCTGTTAC
GAAGAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000339XLOC_000339Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000570-proteinTCONS_00000570-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000570-exon-sc0000002-1575043694:1027678..1028054TCONS_00000570-exon-sc0000002-1575043694:1027678..1028054Clytia hemisphaericaexon
TCONS_00000570-exon-sc0000002-1575043694:1027183..1027426TCONS_00000570-exon-sc0000002-1575043694:1027183..1027426Clytia hemisphaericaexon
TCONS_00000570-exon-sc0000002-1575043694:1025783..1026529TCONS_00000570-exon-sc0000002-1575043694:1025783..1026529Clytia hemisphaericaexon
TCONS_00000570-exon-sc0000002-1510915933:1027678..1028054TCONS_00000570-exon-sc0000002-1510915933:1027678..1028054Clytia hemisphaericaexon
TCONS_00000570-exon-sc0000002-1510915933:1027183..1027426TCONS_00000570-exon-sc0000002-1510915933:1027183..1027426Clytia hemisphaericaexon
TCONS_00000570-exon-sc0000002-1510915933:1025783..1026529TCONS_00000570-exon-sc0000002-1510915933:1025783..1026529Clytia hemisphaericaexon
TCONS_00000570-exon-sc0000002-1491911889:1027678..1028054TCONS_00000570-exon-sc0000002-1491911889:1027678..1028054Clytia hemisphaericaexon
TCONS_00000570-exon-sc0000002-1491911889:1027183..1027426TCONS_00000570-exon-sc0000002-1491911889:1027183..1027426Clytia hemisphaericaexon
TCONS_00000570-exon-sc0000002-1491911889:1025783..1026529TCONS_00000570-exon-sc0000002-1491911889:1025783..1026529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1025783..1028054 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0306106	0	0.0346589	0.0339084	0	0.0326201	0.275484	0.110531	0.077385	0.0639026	0.34114	0.183479	5.90951	5.03184	1.2341	0.948004	0.114896	0.259083	7.20477	5.55246	0.947076	0.573926	0.772146	1.22598	2.66209	4.37039	0.0419733	0.044795	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014716Fibrinogen_a/b/g_C_1
IPR002181Fibrinogen_a/b/g_C_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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