TCONS_00000566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000566
Unique NameTCONS_00000566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000566 ID=TCONS_00000566|Name=TCONS_00000566|organism=Clytia hemisphaerica|type=transcript|length=4359bp
GTAATTTAAACTGACCTTTAAATCGAATTTTCCGAGAAACGCAAATggac
tactttcactttcattttaatcgactcattttctttttatagatgttttc
aataaaaatgacCCATAGATGTAGCTGCatattgttttgtttatatttga
tgaTAACTAGTGTTAAAAGTGTAGAAAAGGTTTTGACATACAAAGTGAAC
ACAAAGACTGATTCTATTTGGGAATATGACGATATAGATGCAGATGGTTG
TGAGAAAATCAAATACAAAAGAGGCTTTCAATTGTTTTGTGTTGATGCAA
GATTTTCATGTACTTTAAAATCCAAACCGTTGATTTTGGATGAAtttaaa
agtgaatttttcaatATTACAATTGAGAACAGTCTTGGTGGTTCAGACCC
TTGTGTCAGTTGTTCTGGGGAAATAAGTGGAACTGTTGATTTATTTCAAA
CCTATAAAAAAGACAGTGATGGAAAAATTGATTCTACCAGAAGCCACAAT
TTTGCATTAGCAGAATCTGTAACAAAAACGATACAAAAGAAACCTAATCT
TGAATATATAGAGATTTGGTTAACATTGAGTAGAATATGTAAACAATCAT
TGATTGTCAAATTGAGTTCAGCAGCTTGTAAACCAGTGGAATCAATAAAA
AATCTAATAGATGTACCGAAAGATCAGGTTTTTCCAGCACCCTCTAAAGA
ACAAGAAACAAATGATGTTGGATTGAGTTGTGTTGACAATGCTGTCGTGA
AAGAAGAACCTGTTTTGAAATGTATGGCAGACGCCTCATACCAAATTACT
GGTAGTTGCCAATGTAATGTGAGTTACGAAAAATTTGAAGATCGCTGTCA
AAAGTGCTCTGCCAATTCTTTTAAACTTGATATTGGAAATGGAAAATGTG
AACAATGTAAAGCCAATTCGAATTATAGTGAAGCACTACAGATGTGTGTT
TGTCAAGGAGACTATTTGAGAGCCCTTGATGAAAAAACTAACAGAAATGC
ACCATGTTACAaaaaacctGTCATGCTGTTCTCCAAAGACATTTACATTC
TAAATAACAAGAACACAAGCGTTACTATACAGATGCTTGATTACGGTCCA
TCAACAACGTACATTATCAATTTACCACACAATGTAAGGAAAGTAGCAAA
CaaaccaattttcaaaatcgatCATCTTCGTCCAAATAGTCAATACAACA
TCACAATTGAAGTTCAGAACGATGTGCTGAGCGCGATTGGGGTTGAAATC
AAAGTAACAAAATCATTTTGGACCAATGTCAAAAAACCTGGAGCAGTGAA
GAATATTCGACTTGAACGTGAGACAATATTGATTTGGGATCCAATAACTG
ATGCTGGGCCAGTTGAATATGTCATCGAGATGCAGAATGAAACCTTAACT
ACACCaaataattttcattctttggaaaataatatgaaatttGTTTCTGG
AAAGATTCATGCTGAAGTCAATGGTCCAACAGGCAAAATTAAAGGCTATC
CAATTGCTTTTACCTTCACACCAACCACaccgaaagaaaaaaatgatttt
catttAATTATTGGAGGTTCCGTTGGAGGGTTCTTGTTGATTTTGATCAT
CCTAATGATTGCATTGCTGGTCAAAAAGCATCGAAAACCAGCACAATTTG
AAGTGACAAGAATGGAAGATGGAACAATGACTATTCCCCGAATGACATTA
TTCAAAACAAGTCGACTATACGTCGATCCCACAACTTACTCACATGTGGA
TGAAGCTGTCGAAGAATTTGCGTTGGAACTTGACCGAAGCTGCTTGACTA
TGGACCAACTTATTGGAGGTGGTGAATTTGCAAATGTCTTCAAAGGAATC
TTGAGTACTGAGAGCAGAAACAGTGACGTTGCAATCAAAGTTCTAAAGAG
TGGAGCAAACCGTAGTGATCGTGATGATTTCTTAAGTGAAGCTGCCATCC
TCGGACAATTCTCCGATCCCAATGTTGTATCTATAGAAGGCGTCGTTCTA
AAAGATTACCCAAGTCTGATTGTATTGGAATATATGGCAAACGGATCTCT
GGACAAGTACCTGGTGAAAAATGATTCACAATTCAGTGTAGCCAAATTAT
TGGGTATGGCACGTGGTGTTGCATCAGGGATGAAATATCTGTCAGACCTT
GGATTCATACACAGGGACTTGGCAGCAAGAAATGTTTTAGTGAACAGTGA
AGATTGCTGTAAGATTGCAGATTTTGGCATGAGTCGTGAACTGAAAACAG
ATGATACCTATGATACAAAGGGTGGAAAGATCCCGATAAAATGGACAGCA
CCCGAAGCTATCGAATACAAAAAGTTCACCACAGCCTCTGATGTGTGGTC
TTACGGTATCGTATGCTGGGAAATCTTCTCTTATGGTGAAAGACCTTACT
GGGAATGGAGCAATTACGAGgtTATGGAAAGACTTTCGACTGGCTATCGG
TTACCTCCACCAATgGAATGTCCTAAAGGAATCCATGATCTGATGTTACA
ATGTTGGCACAAAGATCGTTTGAAGAGACCACGTTTCTCCAATATTCTAC
AGAAAGTGGAAGAATGGTTGAAGAATCCTGATCGACTGACTGATATCGCA
TCTGTTATTACCAAAAGGGACGAAAATTTGGATTATTCAGTACTGGATGA
TTTAGCAAGCTGGTTAGAAGCAATAAATatgaaacaatatttgaaaatgt
ttaccgAGAGTGGTTATATGACACCCAAAGATATTCTCTATTTGACCAAT
GAAGATCTAGAATCGCTTGGTGTTGGTTTGATTGGACATCGCAAGAAACT
GTTGAAAGCaattaaaaacaccaaaaaccagACTGAAAGCACCAACAAAT
CAGATACTGACAGCAAAGCATCCAAAGTGAGTCGAACCAGTAGTTTCGCA
GGATTCGGGAGCTCTCTGAGCAAAAAAGTCTCATTTCTGGCAAGTCCTAA
TTCATCAATATCCTTTAAGAAGACAGTCGGAAAACGAACGTCACTCGGAT
ATCAATTGCAATGATTCTGATTGGCTAGATATTAAGCAGTAgtgaatctg
attggatgaataacGAGAAGTAgcgaatctgattggatgaatatcAAGAA
GTAgtgaatctgattggatgattaTCAAGAAGTAgtgaatctgattggat
gaatatcAAGAAGTAgcgaatctgattggatgaatatcAAGAAGTAgtga
atctgattggatgagtATCAAGAAGTAGTGAATCTGATTGAATGAATATC
AAGAAGTAGCGAATCTGATTAGACGATTATCAAGAAGTagtgaatctgat
tggttggaTAAAGAGCAGTGGATCTGATTGGATAAATATCAAGCAGTagt
gaatctgattggttggaTACAAAGCAGTGCAGTggaaatctgattggtta
aaaatcGACAATAAGCTATGAATCTGATGGttgaatgttaaaaaaaatgc
aGGAATAATGAAGATAACTAATCTGGATGAATGAATATAAACAAAAAGTC
ACGACTCTGATAGGGAGATAATTTACAAAAGATATGAATGAATGAACAAT
GGATAATCAACAGATATTGGGTGAACAATAAACTTCGAGAATGATTGGTT
GATAACAAACAATGGACAGTGTTAATTGATGACGTTCACGAAAGAACCAA
AGTCTCATGATGAACTAATGAaattttttagctaaaatgcATGCATGTAT
GAATAACAATTAACCTAATCATAGAAAGCGTATAACATATATGAGAACGA
TGTTGCATGTGATCAAAGTCATTTCGTAATCGAATTCTTTTTTTGGCGAT
TGACAACTGTTGGTAGATCCTGAatcaaaatagataaaaatgcaGATAGT
TGTTCctatcaacaaaacaaaaaagctagaaatctttattttataaatga
TATGCACCAACTGTATGACTGTATTTCTTTctttacgtcacttgcaacaA
ATCAGCTGTTTTGAATAAAGTTAGGAGACATTGCAGGGGTGCATTTCTTA
AATTAACGGTTTACGAAAAAGTACAAATGTATGAGCTTCAACATCAAATC
TTCACGAACAGTTTTTTTTGTGACGAAACTgatataattttttcaatttt
aacaaaGGAAGGGTCAACTCAATAAGttaaattttatttgtaaatatttt
taccacgcaaatcttttttttttgaaaataactaaCGGATGAAATGAAAC
ACACGACTCATTttataaatcaattttttatgtttttactatattttttt
atattttgtacataaatccttttataacttttgagaattttttacaGTGC
TATTTATGAAAACAAACATTTATATTATAACTCTACATAAATCTTGTGCT
TCGATATCG
Run BLAST on NCBI

transcript from alignment at sc0000002:736495..748372-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000566 ID=TCONS_00000566|Name=TCONS_00000566|organism=Clytia hemisphaerica|type=transcript|length=11878bp|location=Sequence derived from alignment at sc0000002:736495..748372- (Clytia hemisphaerica)
GTAATTTAAACTGACCTTTAAATCGAATTTTCCGAGAAACGCAAATGGAC
TACTTTCACTTTCATTTTAATCGACTCATTTTCTTTTTATAGATGTTTTC
AATAAAAATGACCCATAGATGTAGCTGCATATTGTTTTGTTTATATTTGA
TGATAACTAGTGTTAAAAGTGTAGAAAAGGTTTTGACATACAAAGTGAAC
ACAAAGACTGATTCTATTTGGGAATATGACGATATAGATGCAGATGGTTG
TGAGAAAATCAAATACAAAAGAGGCTTTCAATTGTTTTGTGTTGATGCAA
GATTTTCATGTACTTTAAAATCCAAACCGTTGATTTTGGATGAATTTAAA
AGTGAATTTTTCAATATTACAATTGAGAACAGTCTTGGTGGTTCAGACCC
TTGTGTCAGTTGTTCTGGGGAAATAAGTGGAACTGTTGATTTATTTCAAA
CCTATAAAAAAGACAGTGATGGAAAAATTGATTCTACCAGAAGCCACAAT
TTTGCATTAGCAGAATCTGTAACAAAAACGATACAAAAGAAACCTAATCT
TGAATATATAGAGATTTGGTTAACATTGAGTAGAATATGTAAACAATCAT
TGATTGTCAAATTGAGTTCAGCAGCTTGTAAACCAGTGGAATCAATAAAA
AATCTAATAGATGTACCGAAAGATCAGGTTTTTCCAGCACCCTCTAAAGA
ACAAGAAACAAATGATGTTGGATTGAGTTGTGTTGACAATGCTGTCGTGA
AAGAAGAACCTGTTTTGAAATGTATGGCAGACGCCTCATACCAAATTACT
GGTAGTTGCCAATGTAATGTGAGTTACGAAAAATTTGAAGATCGCTGTCA
AAAGTGCTCTGCCAATTCTTTTAAACTTGATATTGGAAATGGAAAATGTG
AACAATGTAAAGCCAATTCGAATTATAGTGAAGCACTACAGATGTGTGTT
TGTCAAGGAGACTATTTGAGAGCCCTTGATGAAAAAACTAACAGAAATGC
ACCATGTTACAGTAAGAAAATTAATAAAATTATTTTATTCATTTTTGTTT
GTCCTGACATTGACTTTTGAACTCTGCTATGTTAATTGAAATAACTCAAT
TTGAAACATCCAACATAGCTTTATAACTGTGTCATTTATTTAATTATAGT
CACACATGTCTGGAAGCCTATTTTCAGCATTTCTTGTTTAAGCTAGCGAT
TTCAAACTAACTCCCGCAGAGCATTTATTAGGAGAGATATTAACACGTCA
AAAAATTTATTGGAAAATAGAGAAAAAAGCAGTATTACTCGCCAGTACTT
CAACGTACAAAAAACTACTCTTGGTGGTGGGCTATATGGGAAAAAAGTGT
GTTTTCAGTTGGAACTCTCTCGCTGTTTGACTTTCGCAAAATAATCATGG
AAGTGTATATTTTTAGAAAAACCTGTCATGCTGTTCTCCAAAGACATTTA
CATTCTAAATAACAAGAACACAAGCGTTACTATACAGATGCTTGATTACG
GTCCATCAACAACGTACATTATCAATTTACCACACAATGTAAGGAAAGTA
GCAAACAAACCAATTTTCAAAATCGATCATCTTCGTCCAAATAGTCAATA
CAACATCACAATTGAAGTTCAGAACGATGTGCTGAGCGCGATTGGGGTTG
AAATCAAAGTAACAAAATCATTTTGGACCAATGTCAAAAGTAAGTAGTCA
TATTCCAAAAAATAATTGAATACTATTTTAATCTTGATAAATTAAAAAAG
CAATATAGCTTCCATTAATGTTTTAAAAAGTTTCAACAGTTTGCAACAAA
ACATTTTTATGTTTCATTATTCAAAAATTATCCCATCTTAGAACCTGGAG
CAGTGAAGAATATTCGACTTGAACGTGAGACAATATTGATTTGGGATCCA
ATAACTGATGCTGGGCCAGTTGAATATGTCATCGAGATGCAGAATGAAAC
CTTAACTACACCAAATAATTTTCATTCTTTGGAAAATAATATGAAATTTG
TTTCTGGAAAGGTACGTTTTCATATGCGTATGTCATCATCCTCTAGAAAT
TCTCCTAAACTTTCGATCTAAAAATTTTCGTTGTCCATGGTTAATGCTTT
ATTCTATAAAGATTATTTGCAGTTAAGTCTCCCTAATTCGGTAATTCGAA
TCTCTATCACTCGAATGTTTCTATAATGGGCTTTTCCAGAAAAAAACCGT
ATACCCCCTGTTGAGGAGGTCCATCCCCCTGTGGCTGGAAATGCTGTAAC
CCCCTGGAATTCCAGGCAATTTCAGGTTTAAACCCCTCTGGAATTCTGAA
TTTTAATAGGATTTAAAAAGCTACCCCCATGGAATTCCAGTTATTTTTGA
CCGATTTTTGTATCTCCTTATGGAATTCCGCCACATATCAAACCTTACCC
CCTTGGAACGGAAATGGACGAGGGTATACGGTTTTTTTCTAAAAAAGCCC
AATTCGAGCTAAAATATTGGTCCCCTCAGCATGAAAGTGGTTTAAATGTA
ATTCGAGTTTTAGTCCCTCGAAGATCGAATAAGAGAGTGTACTGAAAACT
TAAATAACATAAGACCATTTCTAAGAGCACATTGAAGCTTAAACTCAAAA
TCAACTCCACACCTTTTTTCTAATAGATTCATGCTGAAGTCAATGGTCCA
ACAGGCAAAATTAAAGGCTATCCAATTGCTTTTACCTTCACACCAACCAC
ACCGAAAGAAAAAAATGATTTTCATTTAATTATTGGAGGTTCCGTTGGAG
GGTTCTTGTTGATTTTGATCATCCTAATGATTGCATTGCTGGTCAAAAAG
CATCGAAAACCAGCACAATTTGAAGTGACAAGAATGGAAGATGGAACAAG
TAAGATATTCTAATGGACTATGTTTGATACAATTTGTAGATACCTTAAGG
GAACTTATTTTGCCGGGAACTAATCTTGGCGAACTCGGCAAATTTAGACA
ACATTCGCCAAAAGTGGTTCCCGCCAAAATTAAATATTTCGCTCACTCGC
TAAAATAAGTTCTCGCAAAAATTAAATTTTTTTGGTATTTTGCCTAAACA
ACTTCTTGAGTTCACAAAAACGCTTCAAATAAGGCAAAATAGAACAGATT
TACACTGTCATTCGCCAAAATTTGTTCCCGCTAAAATTAAAGAAATTCAT
CAATCGCAAAAATTTGAAAATTTTAAGGATTTTTGCCACTCGTCAAAATT
AGTTCCCGCCAAAATAAGTTCCCTTAAGGTAATTGAGTTTTTTTTTTAGA
ATANCAAAATTAGTTCCCGCCAAAATAAGTTTCCTTAAGGTAATTGAGTT
GTTTTTTTTTAGAATGTAAGTAATTGCCTTATGAGTAAGCAACAGCCTTG
GTAATAGGAACAACGAACTTGTTTTGACTTTCCTTCAAAAGTATTTATGA
AATAAGGTAAGAAAAGTAATAGAAAATACAACCTATGCCAGAAAAACCTC
CCAAATTAAATTGTCTTTTATTTTAGTGACTATTCCCCGAATGACATTAT
TCAAAACAAGTCGACTATACGTCGATCCCACAACTTACTCACATGTGGAT
GAAGCTGTCGAAGAATTTGCGTTGGAACTTGACCGAAGCTGCTTGACTAT
GGACCAACTTATTGGAGGTGGTGAATTTGCAAATGTCTTCAAAGGAATCT
TGAGTACTGAGAGCAGAAACAGTGACGTTGCAATCAAAGTTCTAAAGGTA
ATACAATCGAGTCTCAATAATTCAAACCTCTATTACTCGAATGACTATTT
AACTCGAATGAGTTTTCTGGTCCCCAAAATTGATAATGCCTGAAAAACCT
TACTCTACACAGCTCTACAACTCGAAATTTCCTTAATTCGAATAAATTTG
ATATATGCACAAGTATAAAAAATCTTGGGAAAACTTAAGCATTCTTTGAA
TGTACGAGTCTCTTTATGATATTTCAAAACAAAAGCCTTCCATATTACAA
TAAGGCGTGTATCTAGCGCATTACATGAGCATGGAATAAACATATTACTT
ATCTTACTTAAGATGTATTTGCTAAGAATAATGGGCTAAAAAAATATTCT
CCAAAAGCTTATTTAAAAAAACGTGTAGTTCTTGTAGTGTGGTTTTAAGA
AAAGGAAGCCATAATTTTACTTCCAAAGTATAGAAGACATAACGAATGAA
CTAGTTGTTTACCTTTTGATACAATTTTTCGTCTAACACATAATTTCTTC
ATTTCCATCAGAGTGGAGCAAACCGTAGTGATCGTGATGATTTCTTAAGT
GAAGCTGCCATCCTCGGACAATTCTCCGATCCCAATGTTGTATCTATAGA
AGGCGTCGTTCTAAAAGGTAAAATTTTTTCACTATTGTGGAAAATATGTG
TGAACATTTGCTAGCAATTGTATTTAAATTCTCAGCTGGCACACAACGTT
GTTTCAACACCCATCTAACGTTATGTTGACGTTGTGAACGTTAGATAAAC
GTTAAAAGAACGTTGTGTGCCAGCTGGATAGATTTACCAAGAGTGCTCAG
TGATGGTACAATACATTTACAGTCATAATAGGGCTTAAGAAAAATGCAAG
TGAATCGATTCGGGGTGGAGCACAGATTTATGACGTTATTGGCTTTTTTT
TTTTGCATCGGTGCTTCAAAGATGAAGAAAAAGTAATGTTATTTCGGTGT
CAAAGCATGCCCTATGGCGACAAATTATGGGTTTTTGGTCGTTGTTGACA
GTGACCAAGAAAAATGCGTCAATCCCCCCCCCCACCCCAATATAGTACCA
ATTCAGTAGCCTTGAAACCAGAGCAATTCGCATATATTTCTTTATGGACG
TGGTACGAAGAATCTCCGGTTTTCTCATAAGGCATTTCGTATGTGCTTTA
ACTCAGTTGTTACTTTTTAAATCTTATACAACAAACATATATCTACTTTT
ACTCAACACTGATTTGCAATTTATTCTCCAGATTACCCAAGTCTGATTGT
ATTGGAATATATGGCAAACGGATCTCTGGACAAGTACCTGGTGGTAAGTG
ATTCAATAATTATGATCACCCTTTTTGGGAAATANATCGTGATGATTTCT
TAAGTGAAGCTGCCATCCTCGGACAATTCTCCGATCCCAATGTTGTATCT
ATAGAAGGCGTCGTTCTAAAAGGTAAAATTTTTTCACTATTGTGGAAAAT
ATGTGTGAACATTTGCTAGCAATTGTATTTAAATTCTCAGCTGGCACACA
ACGTTGTTTCAACACCCATCTAACGTTATGTTGACGTTGTGAACGTTAGA
TAAACGTTAAAAGAACGTTGTGTGCCAGCTGGATAGATTTACCAAGAGTG
CTCAGTGATGGTACAATACATTTACAGTCATAATAGGGCTTAAGAAAAAT
GCAAGTGAATCGATTCGGGGTGGAGCACAGATTTATGACGTTATTGGCTT
TTTTTTTTTGCATCGGTGCTTCAAAGATGAAGAAAAAGTAATGTTATTTC
GGTGTCAAAGCATGCCCTATGGCGACAAATTATGGGTTTTTGGTCGTTGT
TGACAGTGACCAAGAAAAATGCGTCAATACCCCCCCCCCACCCCAATATA
GTACCAATTCAGTAACCTTGAAACCAGAGCAATTTGCATATATTTCTTTA
TGGACTTGGTACGAACAATCTCCGGTTTTCTCATAAGGCATTTCGTATGT
GCTTTAACTCAGTTGTTACTTTTTTTGTAAATCTTATACAACAAACATAT
ATCTACTTTTACTCAACACTGATTCGCAATTTATTCTCCAGATTACCCAA
GTTTGATTGTATTGGAATATATGGCAAACGGATCTCTGGACAAGTACCTG
GTGGTGAGTGATTCAATAATTATGATCACCCTTATTGGGAAATCGTCATT
ACAATTTTCAAGAAAAAAGCCATAGGTATTTTGTGGATTTCATCATGGTC
CCCTATTTCCTTCCTCTTTTTTTACTAACACCAACGTTTAAGTAGAAGAA
TAGCTAAATAATCCAATAGCTATAAACTTTTAATGAAGTTTGGTACAAAA
TTAAAAAAAAATCCCAATTCTCTACCAAAAGGATTAAGTTAGCTGGCATC
AGGAAATAATTATTTATTCTTCTATTTTTCTATCTTAGAAAAATGATTCA
CAATTCAGTGTAGCCAAATTATTGGGTATGGCACGTGGTGTTGCATCAGG
GATGAAATATCTGTCAGACCTTGGATTCATACACAGGGTAAGTGAAATTA
AATTGATCCTACTTTACTCGGATTAAATTTGGCGAGTAAAAAAAATCGCG
AAATTTTCTGGATTTAATTTCGCGAGTCAGAGTTCAAAAAAATTTTGCGT
GGATTAAATTTCGCGAGTAAGCCTGAAAACAGCTGAAAAATAGCCATTTT
TGCCAAAAATGGAGACTTTGGACTGGTTTCTCCTCAGAAAATGCGATTTT
AAAAGCTGGTGGATTTAGCCACGATAAACTTCCAACCATGAATAGGGTCG
ATAAACTTATTTAGATTAATCAAACGTTGTATGGATGTTATAGAAAGCGG
GTATTCTTTTAAAATTTATGCCAGCATTGAAATGACTTCCAGAGCTAAGC
ATCNGTAAGCCTGAAAACAGCTGAAAAATAGCCATTTTTGCCAAAAATGG
AAAATTTGTACTGGTTTCTCCTCAGAAAATGCGATTTTTAAAGCTGGTGG
ATTTAGCCACGATAAACTTCCAACCATGAATAGGGTCGATAAACTTATTT
AGATTAATCAAACGTTGTATGGAAGTTATAGTTATTAGAAAGCGGGTATT
CTTTTAAAATTTATGCCAGCATTGAAATGACTTTCAGAGCTAAGCATGGT
ACATCACTACATTAAAGAGAAACATAACACCGCAAAATGGATGGCTTTTG
AGCTTATTAGCCTGGACGTACGATAAAGTCCTAAGGTTTCTTCAAAATTT
GATCAAAGATTTGCTAAAAGATCTTTCGTGCGTGCCGCCATAAATGGCAA
ATGAAACCTATTTCTGATAATTTAAGGTCACTCGAAATCATTTTATGGCT
TTAAGAATCATGTCAAAAGACAAACGAAACGAAACGAAAAAGAAAGCAAA
ACTAAATTTCTTCTTTTCCATTTCTTTGACAGGACTTGGCAGCAAGAAAT
GTTTTAGTGAACAGTGAAGATTGCTGTAAGATTGCAGATTTTGGCATGAG
TCGTGAACTGAAAACAGATGATACCTATGATACAAAGGTAACAAAATTTC
TGTGTTTTTTTTTCTGTAAACAAGTTGCCAGTATTCTTGGTAAGTGCCAC
ATTACAATGTCTTCTTACATTACGGAACTAACAGCTGATTGTTTGTAAGT
GGCGTAAAATCAGTCAATATGTCACTTGCAACCAATCAGCTGTTGGATCC
GTGGAAGACATTGCAATGATGCATATCATGGATTAAGGAAATGCACTACT
AGTATCTCTTCTGATATTACGCAGGTTGATGTGCTTAGATTTTTGAGCAA
ATTTAAAAAAGATTAATAGATTAGAGAGATTGAAGAGAGATATCTTGATT
TTAAGTTCATTCTCTTGTTTTTCAGGGTGGAAAGATCCCGATAAAATGGA
CAGCACCCGAAGCTATCGAATACAAAAAGTTCACCACAGCCTCTGATGTG
TGGTCTTACGGTATCGTATGCTGGGAAATCTTCTCTTATGGTGAAAGACC
TTACTGGGAATGGAGCAATTACGAGGTAGGTTTCAAGGACAGGGCAGAAT
AGTACCATTAAAGATTCCACTGTCTCTTTCGAAATCCTAATGGAGATGGA
AATTATATTGTTTCAAGAATTTTTTATCCAGTTGAGATCTTTATGGAGTG
AAATATTTTCCATGCACTTTTGAATGGGGATAAAATCAACTGTCCAGTGG
GGCTAAAATTGTAGCGGATTTCTTCCACCGGAAATGAAATTTCGGACAAA
TTTTACGAGGGTGTCTAAAGATTAATGCCTCATAGGATGACCCTAATCAA
ATTTAAATGTATTTGATATATTGGCTGGGTCAAAGGCCATCTGAAGGCAA
ACATTTGAAGGAAAAAAAGTCCGGTGTCCACTTTCGCGCGAAGCGCGCGA
AACTTTTCACGTTATTTGTAACGTCATTGGTTGATTGGTTGATTAAAAAA
AGAAGCAATTCCATTGGTCAAAATTGACGTAACGGTTGAAAAAAGTTGAA
CTTCCTTCAACTTTTTTTTTATTCGCGCGAAACTTTTTTATGACGTAATC
TTTTCTTCAGGCAAAAACGGCTAAGAAAAAATCTTTCGCGCGCTTCGCAC
GAAAGTGGACACCGGCCTTGAAAAACCATAAATCCCTTTAAAAACCCATT
AGAAAAGTGAAGTAGAAATCATCTTCTAAAGAAAAAATTCAATGAGCTAA
TAATTTATTTTTATTTTTTTGAAGGTTATGGAAAGACTTTCGACTGGCTA
TCGGTTACCTCCACCAATGGTAAGAAAAGAAATTTTAAATCTTTGTAATT
TTGTAGAACTTATTAAACTATTGATATTAAGAAAGAAATAAGAAAGTTAA
AAGATTAACCGTGATATTTTAGGAGAAAAGCTACGATCTTTGAATAATAA
TTCACGGTAAAAGACTTCTCATACGATGCAGATTTCAATCGAACCCAAAA
GTCTATCTTTTATTCATCAAATCATTAACCAACACCTCTTTCTTCATAGG
AATGTCCTAAAGGAATCCATGATCTGATGTTACAATGTTGGCACAAAGAT
CGTTTGAAGAGACCACGTTTCTCCAATATTCTACAGAAAGTGGAAGAATG
GTTGAAGAATCCTGATCGACTGACTGATATCGCATCTGTTATTACCAAAA
GGTGAGGTTCTTTTCTCATCTGCAATGGGCTTTCCCAGAGAGGGGGTGGA
GGATATAACATTTTTTTGGAAATTTACCCCCCCCCCCAGACATTGTGACC
TTTAAAACCCTGGACAGCATGTCTACTCCCCTCTCCGGACAAGCATTAGT
TGACCCCCTGGACACTTAAAATTATCCTCAAACAGAGTAAAATTACCCTC
AAACAGAGCAAGTCCCCCGGACAAGGCAAATTTTGTAGATTTTTTACTAC
CCCCGGGACACTATATCCTCCACCCCCATGTATGAACATTTTCTGGAAGC
GCCCAATACTATTATTCTGAATCTAAGTTTAATGAAGGTCTTATGTTGAG
GATTTCTATCTAAAGAGCAGGGGAGGCAGATTCTTGTCTTTCTTGGTAAA
ATCATGGTCAGTTTATGCATTTCTGTGCATTTTAGCGTTTAGCAGATTTT
AAAGTTCGGGCGAGAATGACATTTTCAGGCTTTCTACTTTATCTAATCGG
ATATTTCGATTTGGGAGGAGTGTAATGGCTTTTAGGCTATATTCTGCGTA
GTCAGACCATTCACAAGCTTTTAGATCCTCAGATCCTAAGATAACTCTTA
GGTCTCGTGTTAAACTCAGAGTTAAAACTCTACTTTCAAACCCTAAGTTA
AGAAGGCACTTAAAAACTAATTGCGATTTTAAAAATTTTGCACGGAAATT
CCTTTTGTGCCAAATATTATCGCCATAGTTGCCATTAATGGTCTCTAGCT
AAATTTTCAAAGGGAATTGAGTTTCTTATTGACGGTGACGTTCGATCTCT
ACCTGAAGACTCCGATGACTAGCTACCATGGAAACTATTTTAACTTGACA
AATAATCAGCCTCTTCTTCTTCTTCTTCTTCTTCCCAATCGAGAAATTCA
CTTCAATCTCTGTATACTCCTCAGTTAAACGAACGATTTTTTACCCATAT
CCAAAGTACATTCATCTTACCAGCGAGACTAAAATGACTCTAGAAACGTT
TCTGAAATTACAAAAAGAATTATATCAATATCTCTCTTTTCTATCATTTT
AATAGGGACGAAAATTTGGATTATTCAGTACTGGATGATTTAGCAAGCTG
GTTAGAAGCAATAAATATGAAACAATATTTGAAAATGTTTACCGAGAGTG
GTTATATGACACCCAAAGATATTCTCTATTTGACCAATGAAGATCTAGAA
TCGCTTGGTGTTGGTTTGATTGGACATCGCAAGAAACTGTTGAAAGCAAT
TAAAAACACCAAAAACCAGGTAAGGTCTTAAAATTATAACATTACCTTGT
ATCAGTGAAAGGGTTGCCTAGGATATCTCCTTGTGACCAAAAACAAACCA
ATCACTATAAAGGATGAAAATTAAAAACTTTTTTGATGAATCTAGCAAAG
CTTAAATCTCTTCACCTTCAATGTTAAACATTTTCTTGAAATAATCGAAA
TCAATATTCTTCCAATCATGATCTATCTTTTCAGAATTCTGAATTCAGAA
TTTTTTGAGCAATCACCAATTATCAATTCCATTTTCTTTTCCTTCTTCAG
ACTGAAAGCACCAACAAATCAGATACTGACAGCAAAGCATCCAAAGTGAG
TCGAACCAGTAGTTTCGCAGGATTCGGGAGCTCTCTGAGCAAAAAAGTCT
CATTTCTGGCAAGTCCTAATTCATCAATATCCTTTAAGAAGACAGTCGGA
AAACGAACGTCACTCGGATATCAATTGCAATGATTCTGATTGGCTAGATA
TTAAGCAGTAGTGAATCTGATTGGATGAATAACGAGAAGTAGCGAATCTG
ATTGGATGAATATCAAGAAGTAGTGAATCTGATTGGATGATTATCAAGAA
GTAGTGAATCTGATTGGATGAATATCAAGAAGTAGCGAATCTGATTGGAT
GAATATCAAGAAGTAGTGAATCTGATTGGATGAGTATCAAGAAGTAGTGA
ATCTGATTGAATGAATATCAAGAAGTAGCGAATCTGATTAGACGATTATC
AAGAAGTAGTGAATCTGATTGGTTGGATAAAGAGCAGTGGATCTGATTGG
ATAAATATCAAGCAGTAGTGAATCTGATTGGTTGGATACAAAGCAGTGCA
GTGGAAATCTGATTGGTTAAAAATCGACAATAAGCTATGAATCTGATGGT
TGAATGTTAAAAAAAATGCAGGAATAATGAAGATAACTAATCTGGATGAA
TGAATATAAACAAAAAGTCACGACTCTGATAGGGAGATAATTTACAAAAG
ATATGAATGAATGAACAATGGATAATCAACAGATATTGGGTGAACAATAA
ACTTCGAGAATGATTGGTTGATAACAAACAATGGACAGTGTTAATTGATG
ACGTTCACGAAAGAACCAAAGTCTCATGATGAACTAATGAAATTTTTTAG
CTAAAATGCATGCATGTATGAATAACAATTAACCTAATCATAGAAAGCGT
ATAACATATATGAGAACGATGTTGCATGTGATCAAAGTCATTTCGTAATC
GAATTCTTTTTTTGGCGATTGACAACTGTTGGTAGATCCTGAATCAAAAT
AGATAAAAATGCAGATAGTTGTTCCTATCAACAAAACAAAAAAGCTAGAA
ATCTTTATTTTATAAATGATATGCACCAACTGTATGACTGTATTTCTTTC
TTTACGTCACTTGCAACAAATCAGCTGTTTTGAATAAAGTTAGGAGACAT
TGCAGGGGTGCATTTCTTAAATTAACGGTTTACGAAAAAGTACAAATGTA
TGAGCTTCAACATCAAATCTTCACGAACAGTTTTTTTTGTGACGAAACTG
ATATAATTTTTTCAATTTTAACAAAGGAAGGGTCAACTCAATAAGTTAAA
TTTTATTTGTAAATATTTTTACCACGCAAATCTTTTTTTTTTGAAAATAA
CTAACGGATGAAATGAAACACACGACTCATTTTATAAATCAATTTTTTAT
GTTTTTACTATATTTTTTTATATTTTGTACATAAATCCTTTTATAACTTT
TGAGAATTTTTTACAGTGCTATTTATGAAAACAAACATTTATATTATAAC
TCTACATAAATCTTGTGCTTCGATATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000336XLOC_000336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000566-exon-sc0000002-1575043694:747362..748372TCONS_00000566-exon-sc0000002-1575043694:747362..748372Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:746684..746956TCONS_00000566-exon-sc0000002-1575043694:746684..746956Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:746362..746531TCONS_00000566-exon-sc0000002-1575043694:746362..746531Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:745524..745746TCONS_00000566-exon-sc0000002-1575043694:745524..745746Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:744676..744896TCONS_00000566-exon-sc0000002-1575043694:744676..744896Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:744056..744161TCONS_00000566-exon-sc0000002-1575043694:744056..744161Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:743380..743441TCONS_00000566-exon-sc0000002-1575043694:743380..743441Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:742186..742284TCONS_00000566-exon-sc0000002-1575043694:742186..742284Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:741186..741290TCONS_00000566-exon-sc0000002-1575043694:741186..741290Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:740698..740847TCONS_00000566-exon-sc0000002-1575043694:740698..740847Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:739954..739998TCONS_00000566-exon-sc0000002-1575043694:739954..739998Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:739572..739723TCONS_00000566-exon-sc0000002-1575043694:739572..739723Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:738304..738517TCONS_00000566-exon-sc0000002-1575043694:738304..738517Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1575043694:736495..738022TCONS_00000566-exon-sc0000002-1575043694:736495..738022Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:747362..748372TCONS_00000566-exon-sc0000002-1510915933:747362..748372Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:746684..746956TCONS_00000566-exon-sc0000002-1510915933:746684..746956Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:746362..746531TCONS_00000566-exon-sc0000002-1510915933:746362..746531Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:745524..745746TCONS_00000566-exon-sc0000002-1510915933:745524..745746Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:744676..744896TCONS_00000566-exon-sc0000002-1510915933:744676..744896Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:744056..744161TCONS_00000566-exon-sc0000002-1510915933:744056..744161Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:743380..743441TCONS_00000566-exon-sc0000002-1510915933:743380..743441Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:742186..742284TCONS_00000566-exon-sc0000002-1510915933:742186..742284Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:741186..741290TCONS_00000566-exon-sc0000002-1510915933:741186..741290Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:740698..740847TCONS_00000566-exon-sc0000002-1510915933:740698..740847Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:739954..739998TCONS_00000566-exon-sc0000002-1510915933:739954..739998Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:739572..739723TCONS_00000566-exon-sc0000002-1510915933:739572..739723Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:738304..738517TCONS_00000566-exon-sc0000002-1510915933:738304..738517Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1510915933:736495..738022TCONS_00000566-exon-sc0000002-1510915933:736495..738022Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:747362..748372TCONS_00000566-exon-sc0000002-1491911889:747362..748372Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:746684..746956TCONS_00000566-exon-sc0000002-1491911889:746684..746956Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:746362..746531TCONS_00000566-exon-sc0000002-1491911889:746362..746531Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:745524..745746TCONS_00000566-exon-sc0000002-1491911889:745524..745746Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:744676..744896TCONS_00000566-exon-sc0000002-1491911889:744676..744896Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:744056..744161TCONS_00000566-exon-sc0000002-1491911889:744056..744161Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:743380..743441TCONS_00000566-exon-sc0000002-1491911889:743380..743441Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:742186..742284TCONS_00000566-exon-sc0000002-1491911889:742186..742284Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:741186..741290TCONS_00000566-exon-sc0000002-1491911889:741186..741290Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:740698..740847TCONS_00000566-exon-sc0000002-1491911889:740698..740847Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:739954..739998TCONS_00000566-exon-sc0000002-1491911889:739954..739998Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:739572..739723TCONS_00000566-exon-sc0000002-1491911889:739572..739723Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:738304..738517TCONS_00000566-exon-sc0000002-1491911889:738304..738517Clytia hemisphaericaexon
TCONS_00000566-exon-sc0000002-1491911889:736495..738022TCONS_00000566-exon-sc0000002-1491911889:736495..738022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:736495..748372 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.220917	0	0.142908	3.52229	2.45516	0	0.662273	4.83138	4.86723	3.06342	4.86428	3.29438	5.0191	0	2.82831e-10	5.8207e-09	0	0	6.70305e-07	0.132248	0.156448	0.158486	0.182684	0.284534	0.237557	0	1.04587e-05	0.0664199	0.0725041
Blast
[Close]
BLAST of TCONS_00000566 vs. Swiss-Prot (Human)
Match: EPHA7 (Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 PE=1 SV=3)

HSP 1 Score: 411.764 bits (1057), Expect = 7.633e-123
Identity = 188/386 (48.70%), Postives = 271/386 (70.21%), Query Frame = 3 
Query: 1701 FKTSRLYVDPTTYSHVDEAVEEFALELDRSCLTMDQLIGGGEFANVFKGILSTES-RNSDVAIKVLKSGANRSDRDDFLSEAAILGQFSDPNVVSIEGVVLKDYPSLIVLEYMANGSLDKYLVKNDSQFSVAKLLGMARGVASGMKYLSDLGFIHRDLAARNVLVNSEDCCKIADFGMSRELKTD--DTYDTKGGKIPIKWTAPEAIEYKKFTTASDVWSYGIVCWEIFSYGERPYWEWSNYEVMERLSTGYRLPPPMECPKGIHDLMLQCWHKDRLKRPRFSNILQKVEEWLKNPDRLTDIASVITK-----RDENL-DYSVLDDLASWLEAINMKQYLKMFTESGYMTPKDILYLTNEDLESLGVGLIGHRKKLLKAIKNTKNQ 2831
            F  ++ Y+DP TY   + AV +FA ELD SC+ ++++IG GEF  V  G L     R+  VAIK LK G     R DFL EA+I+GQF  PNVV +EGVV +  P +IV+E+M NG+LD +L K+D QF+V +L+GM RG+A+GM+YL+D+G++HRDLAARN+LVNS   CK++DFG+SR ++ D    Y T GGKIP++WTAPEAI+Y+KFT+ASDVWSYGIV WE+ SYGERPYW+ SN +V++ +  GYRLP PM+CP G+H LML CW K+R +RP+F  I+  +++ ++NP+ L       ++      D+N  D++    +  WL+AI M++Y   FT +GY + + +  +T ED+ SLG+ L+GH+KK++ +I+  + Q
Sbjct:  602 FPGTKTYIDPETYEDPNRAVHQFAKELDASCIKIERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPAPMDCPAGLHQLMLDCWQKERAERPKFEQIVGILDKMIRNPNSLKTPLGTCSRPISPLLDQNTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQ 987
The following BLAST results are available for this feature:
BLAST of TCONS_00000566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EPHA77.633e-12348.70Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 ... [more]
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