TCONS_00000565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000565
Unique NameTCONS_00000565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000565 ID=TCONS_00000565|Name=TCONS_00000565|organism=Clytia hemisphaerica|type=transcript|length=2434bp
GATTTCTTAAGTGAAGCTGCCATCCTCGGACAATTCTCCGATCCCAATGT
TGTATCTATAGAAGGCGTCGTTCTAAAAGATTACCCAAGTTTGATTGTAT
TGGAATATATGGCAAACGGATCTCTGGACAAGTACCTGGTGAAAAATGAT
TCACAATTCAGTGTAGCCAAATTATTGGGTATGGCACGTGGTGTTGCATC
AGGGATGAAATATCTGTCAGACCTTGGATTCATACACAGGGACTTGGCAG
CAAGAAATGTTTTAGTGAACAGTGAAGATTGCTGTAAGATTGCAGATTTT
GGCATGAGTCGTGAACTGAAAACAGATGATACCTATGATACAAAGGGTGG
AAAGATCCCGATAAAATGGACAGCACCCGAAGCTATCGAATACAAAAAGT
TCACCACAGCCTCTGATGTGTGGTCTTACGGTATCGTATGCTGGGAAATC
TTCTCTTATGGTGAAAGACCTTACTGGGAATGGAGCAATTACGAGgtTAT
GGAAAGACTTTCGACTGGCTATCGGTTACCTCCACCAATgGAATGTCCTA
AAGGAATCCATGATCTGATGTTACAATGTTGGCACAAAGATCGTTTGAAG
AGACCACGTTTCTCCAATATTCTACAGAAAGTGGAAGAATGGTTGAAGAA
TCCTGATCGACTGACTGATATCGCATCTGTTATTACCAAAAGGGACGAAA
ATTTGGATTATTCAGTACTGGATGATTTAGCAAGCTGGTTAGAAGCAATA
AATatgaaacaatatttgaaaatgtttaccgAGAGTGGTTATATGACACC
CAAAGATATTCTCTATTTGACCAATGAAGATCTAGAATCGCTTGGTGTTG
GTTTGATTGGACATCGCAAGAAACTGTTGAAAGCaattaaaaacaccaaa
aaccagACTGAAAGCACCAACAAATCAGATACTGACAGCAAAGCATCCAA
AGTGAGTCGAACCAGTAGTTTCGCAGGATTCGGGAGCTCTCTGAGCAAAA
AAGTCTCATTTCTGGCAAGTCCTAATTCATCAATATCCTTTAAGAAGACA
GTCGGAAAACGAACGTCACTCGGATATCAATTGCAATGATTCTGATTGGC
TAGATATTAAGCAGTAgtgaatctgattggatgaataacGAGAAGTAgcg
aatctgattggatgaatatcAAGAAGTAgtgaatctgattggatgattaT
CAAGAAGTAgtgaatctgattggatgaatatcAAGAAGTAgcgaatctga
ttggatgaatatcAAGAAGTAgtgaatctgattggatgagtATCAAGAAG
TAGTGAATCTGATTGAATGAATATCAAGAAGTAGCGAATCTGATTAGACG
ATTATCAAGAAGTagtgaatctgattggttggaTAAAGAGCAGTGGATCT
GATTGGATAAATATCAAGCAGTagtgaatctgattggttggaTACAAAGC
AGTGCAGTggaaatctgattggttaaaaatcGACAATAAGCTATGAATCT
GATGGttgaatgttaaaaaaaatgcaGGAATAATGAAGATAACTAATCTG
GATGAATGAATATAAACAAAAAGTCACGACTCTGATAGGGAGATAATTTA
CAAAAGATATGAATGAATGAACAATGGATAATCAACAGATATTGGGTGAA
CAATAAACTTCGAGAATGATTGGTTGATAACAAACAATGGACAGTGTTAA
TTGATGACGTTCACGAAAGAACCAAAGTCTCATGATGAACTAATGAaatt
ttttagctaaaatgcATGCATGTATGAATAACAATTAACCTAATCATAGA
AAGCGTATAACATATATGAGAACGATGTTGCATGTGATCAAAGTCATTTC
GTAATCGAATTCTTTTTTTGGCGATTGACAACTGTTGGTAGATCCTGAat
caaaatagataaaaatgcaGATAGTTGTTCctatcaacaaaacaaaaaag
ctagaaatctttattttataaatgaTATGCACCAACTGTATGACTGTATT
TCTTTctttacgtcacttgcaacaAATCAGCTGTTTTGAATAAAGTTAGG
AGACATTGCAGGGGTGCATTTCTTAAATTAACGGTTTACGAAAAAGTACA
AATGTATGAGCTTCAACATCAAATCTTCACGAACAGTTTTTTTTGTGACG
AAACTgatataattttttcaattttaacaaaGGAAGGGTCAACTCAATAA
Gttaaattttatttgtaaatatttttaccacgcaaatcttttttttttga
aaataactaaCGGATGAAATGAAACACACGACTCATTttataaatcaatt
ttttatgtttttactatatttttttatattttgtacataaatccttttat
aacttttgagaattttttacaGTGCTATTTATGAAAACAAACATTTATAT
TATAACTCTACATAAATCTTGTGCTTCGATATCG
Run BLAST on NCBI

transcript from alignment at sc0000002:736495..743329-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000565 ID=TCONS_00000565|Name=TCONS_00000565|organism=Clytia hemisphaerica|type=transcript|length=6835bp|location=Sequence derived from alignment at sc0000002:736495..743329- (Clytia hemisphaerica)
GATTTCTTAAGTGAAGCTGCCATCCTCGGACAATTCTCCGATCCCAATGT TGTATCTATAGAAGGCGTCGTTCTAAAAGGTAAAATTTTTTCACTATTGT GGAAAATATGTGTGAACATTTGCTAGCAATTGTATTTAAATTCTCAGCTG GCACACAACGTTGTTTCAACACCCATCTAACGTTATGTTGACGTTGTGAA CGTTAGATAAACGTTAAAAGAACGTTGTGTGCCAGCTGGATAGATTTACC AAGAGTGCTCAGTGATGGTACAATACATTTACAGTCATAATAGGGCTTAA GAAAAATGCAAGTGAATCGATTCGGGGTGGAGCACAGATTTATGACGTTA TTGGCTTTTTTTTTTTGCATCGGTGCTTCAAAGATGAAGAAAAAGTAATG TTATTTCGGTGTCAAAGCATGCCCTATGGCGACAAATTATGGGTTTTTGG TCGTTGTTGACAGTGACCAAGAAAAATGCGTCAATACCCCCCCCCCACCC CAATATAGTACCAATTCAGTAACCTTGAAACCAGAGCAATTTGCATATAT TTCTTTATGGACTTGGTACGAACAATCTCCGGTTTTCTCATAAGGCATTT CGTATGTGCTTTAACTCAGTTGTTACTTTTTTTGTAAATCTTATACAACA AACATATATCTACTTTTACTCAACACTGATTCGCAATTTATTCTCCAGAT TACCCAAGTTTGATTGTATTGGAATATATGGCAAACGGATCTCTGGACAA GTACCTGGTGGTGAGTGATTCAATAATTATGATCACCCTTATTGGGAAAT CGTCATTACAATTTTCAAGAAAAAAGCCATAGGTATTTTGTGGATTTCAT CATGGTCCCCTATTTCCTTCCTCTTTTTTTACTAACACCAACGTTTAAGT AGAAGAATAGCTAAATAATCCAATAGCTATAAACTTTTAATGAAGTTTGG TACAAAATTAAAAAAAAATCCCAATTCTCTACCAAAAGGATTAAGTTAGC TGGCATCAGGAAATAATTATTTATTCTTCTATTTTTCTATCTTAGAAAAA TGATTCACAATTCAGTGTAGCCAAATTATTGGGTATGGCACGTGGTGTTG CATCAGGGATGAAATATCTGTCAGACCTTGGATTCATACACAGGGTAAGT GAAATTAAATTGATCCTACTTTACTCGGATTAAATTTGGCGAGTAAAAAA AATCGCGAAATTTTCTGGATTTAATTTCGCGAGTCAGAGTTCAAAAAAAT TTTGCGTGGATTAAATTTCGCGAGTAAGCCTGAAAACAGCTGAAAAATAG CCATTTTTGCCAAAAATGGAGACTTTGGACTGGTTTCTCCTCAGAAAATG CGATTTTAAAAGCTGGTGGATTTAGCCACGATAAACTTCCAACCATGAAT AGGGTCGATAAACTTATTTAGATTAATCAAACGTTGTATGGATGTTATAG AAAGCGGGTATTCTTTTAAAATTTATGCCAGCATTGAAATGACTTCCAGA GCTAAGCATCNGTAAGCCTGAAAACAGCTGAAAAATAGCCATTTTTGCCA AAAATGGAAAATTTGTACTGGTTTCTCCTCAGAAAATGCGATTTTTAAAG CTGGTGGATTTAGCCACGATAAACTTCCAACCATGAATAGGGTCGATAAA CTTATTTAGATTAATCAAACGTTGTATGGAAGTTATAGTTATTAGAAAGC GGGTATTCTTTTAAAATTTATGCCAGCATTGAAATGACTTTCAGAGCTAA GCATGGTACATCACTACATTAAAGAGAAACATAACACCGCAAAATGGATG GCTTTTGAGCTTATTAGCCTGGACGTACGATAAAGTCCTAAGGTTTCTTC AAAATTTGATCAAAGATTTGCTAAAAGATCTTTCGTGCGTGCCGCCATAA ATGGCAAATGAAACCTATTTCTGATAATTTAAGGTCACTCGAAATCATTT TATGGCTTTAAGAATCATGTCAAAAGACAAACGAAACGAAACGAAAAAGA AAGCAAAACTAAATTTCTTCTTTTCCATTTCTTTGACAGGACTTGGCAGC AAGAAATGTTTTAGTGAACAGTGAAGATTGCTGTAAGATTGCAGATTTTG GCATGAGTCGTGAACTGAAAACAGATGATACCTATGATACAAAGGTAACA AAATTTCTGTGTTTTTTTTTCTGTAAACAAGTTGCCAGTATTCTTGGTAA GTGCCACATTACAATGTCTTCTTACATTACGGAACTAACAGCTGATTGTT TGTAAGTGGCGTAAAATCAGTCAATATGTCACTTGCAACCAATCAGCTGT TGGATCCGTGGAAGACATTGCAATGATGCATATCATGGATTAAGGAAATG CACTACTAGTATCTCTTCTGATATTACGCAGGTTGATGTGCTTAGATTTT TGAGCAAATTTAAAAAAGATTAATAGATTAGAGAGATTGAAGAGAGATAT CTTGATTTTAAGTTCATTCTCTTGTTTTTCAGGGTGGAAAGATCCCGATA AAATGGACAGCACCCGAAGCTATCGAATACAAAAAGTTCACCACAGCCTC TGATGTGTGGTCTTACGGTATCGTATGCTGGGAAATCTTCTCTTATGGTG AAAGACCTTACTGGGAATGGAGCAATTACGAGGTAGGTTTCAAGGACAGG GCAGAATAGTACCATTAAAGATTCCACTGTCTCTTTCGAAATCCTAATGG AGATGGAAATTATATTGTTTCAAGAATTTTTTATCCAGTTGAGATCTTTA TGGAGTGAAATATTTTCCATGCACTTTTGAATGGGGATAAAATCAACTGT CCAGTGGGGCTAAAATTGTAGCGGATTTCTTCCACCGGAAATGAAATTTC GGACAAATTTTACGAGGGTGTCTAAAGATTAATGCCTCATAGGATGACCC TAATCAAATTTAAATGTATTTGATATATTGGCTGGGTCAAAGGCCATCTG AAGGCAAACATTTGAAGGAAAAAAAGTCCGGTGTCCACTTTCGCGCGAAG CGCGCGAAACTTTTCACGTTATTTGTAACGTCATTGGTTGATTGGTTGAT TAAAAAAAGAAGCAATTCCATTGGTCAAAATTGACGTAACGGTTGAAAAA AGTTGAACTTCCTTCAACTTTTTTTTTATTCGCGCGAAACTTTTTTATGA CGTAATCTTTTCTTCAGGCAAAAACGGCTAAGAAAAAATCTTTCGCGCGC TTCGCACGAAAGTGGACACCGGCCTTGAAAAACCATAAATCCCTTTAAAA ACCCATTAGAAAAGTGAAGTAGAAATCATCTTCTAAAGAAAAAATTCAAT GAGCTAATAATTTATTTTTATTTTTTTGAAGGTTATGGAAAGACTTTCGA CTGGCTATCGGTTACCTCCACCAATGGTAAGAAAAGAAATTTTAAATCTT TGTAATTTTGTAGAACTTATTAAACTATTGATATTAAGAAAGAAATAAGA AAGTTAAAAGATTAACCGTGATATTTTAGGAGAAAAGCTACGATCTTTGA ATAATAATTCACGGTAAAAGACTTCTCATACGATGCAGATTTCAATCGAA CCCAAAAGTCTATCTTTTATTCATCAAATCATTAACCAACACCTCTTTCT TCATAGGAATGTCCTAAAGGAATCCATGATCTGATGTTACAATGTTGGCA CAAAGATCGTTTGAAGAGACCACGTTTCTCCAATATTCTACAGAAAGTGG AAGAATGGTTGAAGAATCCTGATCGACTGACTGATATCGCATCTGTTATT ACCAAAAGGTGAGGTTCTTTTCTCATCTGCAATGGGCTTTCCCAGAGAGG GGGTGGAGGATATAACATTTTTTTGGAAATTTACCCCCCCCCCCAGACAT TGTGACCTTTAAAACCCTGGACAGCATGTCTACTCCCCTCTCCGGACAAG CATTAGTTGACCCCCTGGACACTTAAAATTATCCTCAAACAGAGTAAAAT TACCCTCAAACAGAGCAAGTCCCCCGGACAAGGCAAATTTTGTAGATTTT TTACTACCCCCGGGACACTATATCCTCCACCCCCATGTATGAACATTTTC TGGAAGCGCCCAATACTATTATTCTGAATCTAAGTTTAATGAAGGTCTTA TGTTGAGGATTTCTATCTAAAGAGCAGGGGAGGCAGATTCTTGTCTTTCT TGGTAAAATCATGGTCAGTTTATGCATTTCTGTGCATTTTAGCGTTTAGC AGATTTTAAAGTTCGGGCGAGAATGACATTTTCAGGCTTTCTACTTTATC TAATCGGATATTTCGATTTGGGAGGAGTGTAATGGCTTTTAGGCTATATT CTGCGTAGTCAGACCATTCACAAGCTTTTAGATCCTCAGATCCTAAGATA ACTCTTAGGTCTCGTGTTAAACTCAGAGTTAAAACTCTACTTTCAAACCC TAAGTTAAGAAGGCACTTAAAAACTAATTGCGATTTTAAAAATTTTGCAC GGAAATTCCTTTTGTGCCAAATATTATCGCCATAGTTGCCATTAATGGTC TCTAGCTAAATTTTCAAAGGGAATTGAGTTTCTTATTGACGGTGACGTTC GATCTCTACCTGAAGACTCCGATGACTAGCTACCATGGAAACTATTTTAA CTTGACAAATAATCAGCCTCTTCTTCTTCTTCTTCTTCTTCCCAATCGAG AAATTCACTTCAATCTCTGTATACTCCTCAGTTAAACGAACGATTTTTTA CCCATATCCAAAGTACATTCATCTTACCAGCGAGACTAAAATGACTCTAG AAACGTTTCTGAAATTACAAAAAGAATTATATCAATATCTCTCTTTTCTA TCATTTTAATAGGGACGAAAATTTGGATTATTCAGTACTGGATGATTTAG CAAGCTGGTTAGAAGCAATAAATATGAAACAATATTTGAAAATGTTTACC GAGAGTGGTTATATGACACCCAAAGATATTCTCTATTTGACCAATGAAGA TCTAGAATCGCTTGGTGTTGGTTTGATTGGACATCGCAAGAAACTGTTGA AAGCAATTAAAAACACCAAAAACCAGGTAAGGTCTTAAAATTATAACATT ACCTTGTATCAGTGAAAGGGTTGCCTAGGATATCTCCTTGTGACCAAAAA CAAACCAATCACTATAAAGGATGAAAATTAAAAACTTTTTTGATGAATCT AGCAAAGCTTAAATCTCTTCACCTTCAATGTTAAACATTTTCTTGAAATA ATCGAAATCAATATTCTTCCAATCATGATCTATCTTTTCAGAATTCTGAA TTCAGAATTTTTTGAGCAATCACCAATTATCAATTCCATTTTCTTTTCCT TCTTCAGACTGAAAGCACCAACAAATCAGATACTGACAGCAAAGCATCCA AAGTGAGTCGAACCAGTAGTTTCGCAGGATTCGGGAGCTCTCTGAGCAAA AAAGTCTCATTTCTGGCAAGTCCTAATTCATCAATATCCTTTAAGAAGAC AGTCGGAAAACGAACGTCACTCGGATATCAATTGCAATGATTCTGATTGG CTAGATATTAAGCAGTAGTGAATCTGATTGGATGAATAACGAGAAGTAGC GAATCTGATTGGATGAATATCAAGAAGTAGTGAATCTGATTGGATGATTA TCAAGAAGTAGTGAATCTGATTGGATGAATATCAAGAAGTAGCGAATCTG ATTGGATGAATATCAAGAAGTAGTGAATCTGATTGGATGAGTATCAAGAA GTAGTGAATCTGATTGAATGAATATCAAGAAGTAGCGAATCTGATTAGAC GATTATCAAGAAGTAGTGAATCTGATTGGTTGGATAAAGAGCAGTGGATC TGATTGGATAAATATCAAGCAGTAGTGAATCTGATTGGTTGGATACAAAG CAGTGCAGTGGAAATCTGATTGGTTAAAAATCGACAATAAGCTATGAATC TGATGGTTGAATGTTAAAAAAAATGCAGGAATAATGAAGATAACTAATCT GGATGAATGAATATAAACAAAAAGTCACGACTCTGATAGGGAGATAATTT ACAAAAGATATGAATGAATGAACAATGGATAATCAACAGATATTGGGTGA ACAATAAACTTCGAGAATGATTGGTTGATAACAAACAATGGACAGTGTTA ATTGATGACGTTCACGAAAGAACCAAAGTCTCATGATGAACTAATGAAAT TTTTTAGCTAAAATGCATGCATGTATGAATAACAATTAACCTAATCATAG AAAGCGTATAACATATATGAGAACGATGTTGCATGTGATCAAAGTCATTT CGTAATCGAATTCTTTTTTTGGCGATTGACAACTGTTGGTAGATCCTGAA TCAAAATAGATAAAAATGCAGATAGTTGTTCCTATCAACAAAACAAAAAA GCTAGAAATCTTTATTTTATAAATGATATGCACCAACTGTATGACTGTAT TTCTTTCTTTACGTCACTTGCAACAAATCAGCTGTTTTGAATAAAGTTAG GAGACATTGCAGGGGTGCATTTCTTAAATTAACGGTTTACGAAAAAGTAC AAATGTATGAGCTTCAACATCAAATCTTCACGAACAGTTTTTTTTGTGAC GAAACTGATATAATTTTTTCAATTTTAACAAAGGAAGGGTCAACTCAATA AGTTAAATTTTATTTGTAAATATTTTTACCACGCAAATCTTTTTTTTTTG AAAATAACTAACGGATGAAATGAAACACACGACTCATTTTATAAATCAAT TTTTTATGTTTTTACTATATTTTTTTATATTTTGTACATAAATCCTTTTA TAACTTTTGAGAATTTTTTACAGTGCTATTTATGAAAACAAACATTTATA TTATAACTCTACATAAATCTTGTGCTTCGATATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000336XLOC_000336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000565-exon-sc0000002-1575043694:743251..743329TCONS_00000565-exon-sc0000002-1575043694:743251..743329Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1575043694:742570..742631TCONS_00000565-exon-sc0000002-1575043694:742570..742631Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1575043694:742186..742284TCONS_00000565-exon-sc0000002-1575043694:742186..742284Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1575043694:741186..741290TCONS_00000565-exon-sc0000002-1575043694:741186..741290Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1575043694:740698..740847TCONS_00000565-exon-sc0000002-1575043694:740698..740847Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1575043694:739954..739998TCONS_00000565-exon-sc0000002-1575043694:739954..739998Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1575043694:739572..739723TCONS_00000565-exon-sc0000002-1575043694:739572..739723Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1575043694:738304..738517TCONS_00000565-exon-sc0000002-1575043694:738304..738517Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1575043694:736495..738022TCONS_00000565-exon-sc0000002-1575043694:736495..738022Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1510915933:743251..743329TCONS_00000565-exon-sc0000002-1510915933:743251..743329Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1510915933:742570..742631TCONS_00000565-exon-sc0000002-1510915933:742570..742631Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1510915933:742186..742284TCONS_00000565-exon-sc0000002-1510915933:742186..742284Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1510915933:741186..741290TCONS_00000565-exon-sc0000002-1510915933:741186..741290Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1510915933:740698..740847TCONS_00000565-exon-sc0000002-1510915933:740698..740847Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1510915933:739954..739998TCONS_00000565-exon-sc0000002-1510915933:739954..739998Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1510915933:739572..739723TCONS_00000565-exon-sc0000002-1510915933:739572..739723Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1510915933:738304..738517TCONS_00000565-exon-sc0000002-1510915933:738304..738517Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1510915933:736495..738022TCONS_00000565-exon-sc0000002-1510915933:736495..738022Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1491911889:743251..743329TCONS_00000565-exon-sc0000002-1491911889:743251..743329Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1491911889:742570..742631TCONS_00000565-exon-sc0000002-1491911889:742570..742631Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1491911889:742186..742284TCONS_00000565-exon-sc0000002-1491911889:742186..742284Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1491911889:741186..741290TCONS_00000565-exon-sc0000002-1491911889:741186..741290Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1491911889:740698..740847TCONS_00000565-exon-sc0000002-1491911889:740698..740847Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1491911889:739954..739998TCONS_00000565-exon-sc0000002-1491911889:739954..739998Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1491911889:739572..739723TCONS_00000565-exon-sc0000002-1491911889:739572..739723Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1491911889:738304..738517TCONS_00000565-exon-sc0000002-1491911889:738304..738517Clytia hemisphaericaexon
TCONS_00000565-exon-sc0000002-1491911889:736495..738022TCONS_00000565-exon-sc0000002-1491911889:736495..738022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:736495..743329 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.117467 0.0144514 0 0 0 0 0 0 0.000267772 0 0 2.14633e-10 0 0 0 0 0 0.0884541 0 0.0254887 0.0303913 0 0 0 0 0 0 3.60656e-06
Blast
BLAST of TCONS_00000565 vs. Swiss-Prot (Human)
Match: EPHA7 (Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 PE=1 SV=3)

HSP 1 Score: 354.369 bits (908), Expect = 7.922e-107
Identity = 156/310 (50.32%), Postives = 228/310 (73.55%), Query Frame = 1
Query:    1 DFLSEAAILGQFSDPNVVSIEGVVLKDYPSLIVLEYMANGSLDKYLVKNDSQFSVAKLLGMARGVASGMKYLSDLGFIHRDLAARNVLVNSEDCCKIADFGMSRELKTDD--TYDTKGGKIPIKWTAPEAIEYKKFTTASDVWSYGIVCWEIFSYGERPYWEWSNYEVMERLSTGYRLPPPMECPKGIHDLMLQCWHKDRLKRPRFSNILQKVEEWLKNPDRLTDIASVITKR-----DENL-DYSVLDDLASWLEAINMKQYLKMFTESGYMTPKDILYLTNEDLESLGVGLIGHRKKLLKAIKNTKNQ 906
            DFL EA+I+GQF  PNVV +EGVV +  P +IV+E+M NG+LD +L K+D QF+V +L+GM RG+A+GM+YL+D+G++HRDLAARN+LVNS   CK++DFG+SR ++ D    Y T GGKIP++WTAPEAI+Y+KFT+ASDVWSYGIV WE+ SYGERPYW+ SN +V++ +  GYRLP PM+CP G+H LML CW K+R +RP+F  I+  +++ ++NP+ L       ++      D+N  D++    +  WL+AI M++Y   FT +GY + + +  +T ED+ SLG+ L+GH+KK++ +I+  + Q
Sbjct:  678 DFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPAPMDCPAGLHQLMLDCWQKERAERPKFEQIVGILDKMIRNPNSLKTPLGTCSRPISPLLDQNTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQ 987          
The following BLAST results are available for this feature:
BLAST of TCONS_00000565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EPHA77.922e-10750.32Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 ... [more]
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