TCONS_00000563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000563
Unique NameTCONS_00000563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000563 ID=TCONS_00000563|Name=TCONS_00000563|organism=Clytia hemisphaerica|type=transcript|length=1441bp
CGCAGCTACCATTATGAAGTCATTTTATGATAAGAGCATAGATATGAGAG
AGAAAAAAAGGATTTGCTATCTTTGCAAATATATACATCATTGTAAAAAC
TATATAATATTGATTGATTAGCTCAGTTATTTAGTGTGTTAGAATTGATC
ATTTTAATCTGACTTCAGTagtctaaattttcaaaacagttGTTATACAG
AGGAAAGTTTCGGTAAATCAAATATTTGAAGCAATCATGGGAGGAGTATG
TGTCAAGTACTCATtgcttattttcaattttatattCTGGATTATTGGGA
TCGCACTCATCAGCCTTGGAGCGtatctaaaatcgaaatatggaGATTAC
TTATCTTATAACGAGAGTGACAAATTTATATCAATGTCAATGTTTCTTAT
CATTCTTGgtctgtttatttttttaattgcttTCCTCGGATGTTTTGGTG
TTTTCAGAGAGAACCAATTTCTGATTACATGTTTTGCTGTTTGCATGGCT
GTCATTATGATCCTTGAGATTACTGCTGGAATTCTTGGTTATGTTTATAG
AGGAAAGGTTGAAACAATAGTTGACAACACTTTAAATCAAGCTGTCAGTA
AGTATTTTGACCAAAACCAACCAGGAGCTAAAACACTCTTAGATTGGGCT
CAACAACAGTTTGACTGCTGTGGTATCGAAGGTTTTAATGATTATCAACA
ACCATCGAAGAATTCAACTGATTTTTGTTACCAATCGGGTGGAGTAGCTT
CATGTTATTCTGATAACAAGTGTGATTCCGGAGAGCAATACAAAGAAGGC
TGTAAACAGAATGTAATTGACCTTGCTGAAAATAATATGTTGCTATGTGG
AGCTGTTGCATTAGCATTCGCTGGAATTCAAATACTTGGACTGATTCTTG
CTTGCTGTCTAATAAgagtaataaaatataattacatgTATGTTTAAAGA
CGATATATATTGAAACAAGAGAATTCCTTGgattaatctcatggttgatt
gaaattcgattgacgtttttgcttacgttaatttgaaatttcctgcgaac
ttgtaatttccctcctagcttttgtaaattccctcctagattttgtaatt
tcccgcaaaagtgaaatttccatcgtttggaaattcatcacctttttcga
aTTCTTACTAACTTTGAAGGCTTAcgtaaatggaatactatccaattaaa
actcgattcgcatttctatgactttttgagacctctttttaaagtttcag
attaatttccagtgttaaattgacgtcttcCAGAATTggtagaatttcaa
tccaaaccatgagattaaccaggaatctcATGCTTGTCtccgtgaaattc
tggataaattaccctcggtcaaatttcgaaatgttttaaatttccctcgt
tgcactcgggaaatttcaaaaaatttcaaaatttacctCGG
Run BLAST on NCBI

protein sequence of TCONS_00000563-protein

>TCONS_00000563-protein ID=TCONS_00000563-protein|Name=TCONS_00000563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MGGVCVKYSLLIFNFIFWIIGIALISLGAYLKSKYGDYLSYNESDKFISM
SMFLIILGLFIFLIAFLGCFGVFRENQFLITCFAVCMAVIMILEITAGIL
GYVYRGKVETIVDNTLNQAVSKYFDQNQPGAKTLLDWAQQQFDCCGIEGF
NDYQQPSKNSTDFCYQSGGVASCYSDNKCDSGEQYKEGCKQNVIDLAENN
MLLCGAVALAFAGIQILGLILACCLIRVIKYNYMYV
Run BLAST on NCBI

transcript from alignment at sc0000002:702889..705918-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000563 ID=TCONS_00000563|Name=TCONS_00000563|organism=Clytia hemisphaerica|type=transcript|length=3030bp|location=Sequence derived from alignment at sc0000002:702889..705918- (Clytia hemisphaerica)
CGCAGCTACCATTATGAAGTCATTTTATGATAAGAGCATAGATATGAGAG
AGAAAAAAAGGATTTGCTATCTTTGCAAATATATACATCATTGTAAAAAC
TATATAATATTGATTGATTAGCTCAGTTATTTAGTGTGTTAGAATTGATC
ATTTTAATCTGACTTCAGTAGTCTAAATTTTCAAAACAGTTGTTATACAG
AGGAAAGTTTCGGTAAATCAAATATTTGAAGCAATCATGGGAGGAGTATG
TGTCAAGTACTCATTGCTTATTTTCAATTTTATATTCTGGGTAAGTTTAG
TGATCAGGTCAACATTTAGGGGCCGTCCACATAGTACGTACGCACTAAAA
TGTCGAAAATCAAGTATTTCCTCCCCCATATACGCAAGCGTACGCAAATG
GCTATACCCCCTGGTAAGTACATAATTTTTCATTCACCCCCTCCCTCTAC
CATGAAAAGCACAGGTCGAAATCATATATCGACGCTGTGCCGACCAATCC
AGATTCTATTCAGCGCGCAATCAACGCAGAGAAAAGTAACCATGACGACT
ATCCAAGATCTTGGATGAAGTTCAAAGTTGATATTTTTATTCCCGTCGTT
AAAAACACAACTGAAAAATATCATCGATGCTTTTTAAAAAGAGTCAGTGA
TAGAGAATCATAACATAAAGTCTGTCTATTATTTCGATTCAATTAAAGTG
ACATTTCCACAATTAAGAGTTTATTTTATAGTAATTACTGTTATACATTT
GGGGATCATGTAAAAGATAATTTTTCTCTGCGTACGTACATTTTCCTTTG
ACCCCTCCCCTCCCCCTGTACGCAAGTATACCTTTTTTAGAAACCCCCCC
CCCTTAGTGCGTACATACTATGTGGACGACCCCTTACGACATTTACTTTC
TCCATTTTTTGGGCAAATTTTGCATCTCATCTTACAGGGTCTAAATTTCG
TTTGTTCAACTGTCAAGATCCAATCTTTGCTCCCTGTATATAAGTGGATC
TAACAGAGGATTTTCAAAATTGTAGTGAACAAGGTTCTTTCAGGGGACTT
CTCTTTTTTTTTTACCTCAGGGTCAGTTTTCGGTAAAGAAGGGGTGATCC
GCCTGGTCTGTGATACAGGGAAGTCATTCCAAAACTATTTCGAACCTAAT
AAATATTCATGTCATTGACTTTCCAAAGACTCAAGACCGAAATATGGTTA
CGGTACTCTTAAAAACAGCAACTCCGGCCATTTTTTAGCATGAAATCAAC
AGAACTTCAGCGAATTTGCTAAAATTAGTTCTGGTTTGATGCAATCTAAA
TATTCAAGTTGTCACTTTTAACACATATACTTCTCGACGACTAGTGGACG
CCTGTCCTAGGACAAGGACTTTGAAAGTAGTCATTGTTCGAAAGATATTC
AAGCTCTTCCGTTCATTACTTTCAGATTATTGGGATCGCACTCATCAGCC
TTGGAGCGTATCTAAAATCGAAATATGGAGATTACTTATCTTATAACGAG
AGTGACAAATTTATATCAATGTCAATGTTTCTTATCATTCTTGGTCTGTT
TATTTTTTTAATTGCTTTCCTCGGATGTTTTGGTGTTTTCAGAGAGAACC
AATTTCTGATTACATGTTTTGCTGTTTGCATGGCTGTCATTATGATCCTT
GAGATTACTGCTGGAATTCTTGGTTATGTTTATAGAGGAAAGGTATGTGT
TCCTCATCTGGTTTTAGACCATCCAAAAGCGTTTGATGATTTTTTTCAAT
CTCTGCCTAAAACTTTTGCCTAATCAAGTCGAATGTGAAAATGAAAATCG
GTCTTGCAATAATTCGTCAATAAAACGTGGCCGTATTGAACTATTTTCTA
ATGCCCCTAAACTTCTAACTCTTAAAAGGAGACCACTAAAAACAGAGATT
TGGGTGTGAGTTTGCTTCTCAAAAATTCAACTTTCCATAATATACAGGTT
GAAACAATAGTTGACAACACTTTAAATCAAGCTGTCAGTAAGTATTTTGA
CCAAAACCAACCAGGAGCTAAAACACTCTTAGATTGGGCTCAACAACAGT
TTGACTGCTGTGGTATCGAAGGTTTTAATGATTATCAACAACCATCGAAG
AATTCAACTGATTTTTGTTACCAATCGGGTGGAGTAGCTTCATGTTATTC
TGATAACAAGTGTGATTCCGGAGAGCAATACAAAGAAGGCTGTAAACAGA
ATGTAATTGACCTTGCTGAAAATAATATGTTGCTATGTGGAGCTGTTGCA
TTAGCATTCGCTGGAATTCAAGTTAGTATGATTTGATAATTACAATAATT
TGTTAGTGAAGTTATTTTTTCCCCCAGAAAAGAAAACATCCCGAGTATCT
ACTTCTAACTTACAAGATAATAATTTTTATCTAGATTTAGGTCTTAGCTG
TATCAGTTCATGAACACGGTCAACTACCATCTTACGATCTTAATTTATTT
TTATTCGATTTTCATTTTAGATACTTGGACTGATTCTTGCTTGCTGTCTA
ATAAGAGTAATAAAATATAATTACATGTATGTTTAAAGACGATATATATT
GAAACAAGAGAATTCCTTGGATTAATCTCATGGTTGATTGAAATTCGATT
GACGTTTTTGCTTACGTTAATTTGAAATTTCCTGCGAACTTGTAATTTCC
CTCCTAGCTTTTGTAAATTCCCTCCTAGATTTTGTAATTTCCCGCAAAAG
TGAAATTTCCATCGTTTGGAAATTCATCACCTTTTTCGAATTCTTACTAA
CTTTGAAGGCTTACGTAAATGGAATACTATCCAATTAAAACTCGATTCGC
ATTTCTATGACTTTTTGAGACCTCTTTTTAAAGTTTCAGATTAATTTCCA
GTGTTAAATTGACGTCTTCCAGAATTGGTAGAATTTCAATCCAAACCATG
AGATTAACCAGGAATCTCATGCTTGTCTCCGTGAAATTCTGGATAAATTA
CCCTCGGTCAAATTTCGAAATGTTTTAAATTTCCCTCGTTGCACTCGGGA
AATTTCAAAAAATTTCAAAATTTACCTCGG

Coding sequence (CDS) from alignment at sc0000002:702889..705918-

>TCONS_00000563 ID=TCONS_00000563|Name=TCONS_00000563|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000002:702889..705918- (Clytia hemisphaerica)
ATACTTGGACTGATTCTTGCTTGCTGTCTAATAAGAGTAATAAAATATAA
TTACATGTATGTTTAAGTTGAAACAATAGTTGACAACACTTTAAATCAAG
CTGTCAGTAAGTATTTTGACCAAAACCAACCAGGAGCTAAAACACTCTTA
GATTGGGCTCAACAACAGTTTGACTGCTGTGGTATCGAAGGTTTTAATGA
TTATCAACAACCATCGAAGAATTCAACTGATTTTTGTTACCAATCGGGTG
GAGTAGCTTCATGTTATTCTGATAACAAGTGTGATTCCGGAGAGCAATAC
AAAGAAGGCTGTAAACAGAATGTAATTGACCTTGCTGAAAATAATATGTT
GCTATGTGGAGCTGTTGCATTAGCATTCGCTGGAATTCAAATTATTGGGA
TCGCACTCATCAGCCTTGGAGCGTATCTAAAATCGAAATATGGAGATTAC
TTATCTTATAACGAGAGTGACAAATTTATATCAATGTCAATGTTTCTTAT
CATTCTTGGTCTGTTTATTTTTTTAATTGCTTTCCTCGGATGTTTTGGTG
TTTTCAGAGAGAACCAATTTCTGATTACATGTTTTGCTGTTTGCATGGCT
GTCATTATGATCCTTGAGATTACTGCTGGAATTCTTGGTTATGTTTATAG
AGGAAAGATGGGAGGAGTATGTGTCAAGTACTCATTGCTTATTTTCAATT
TTATATTCTGGATACTTGGACTGATTCTTGCTTGCTGTCTAATAAGAGTA
ATAAAATATAATTACATGTATGTTTAAGTTGAAACAATAGTTGACAACAC
TTTAAATCAAGCTGTCAGTAAGTATTTTGACCAAAACCAACCAGGAGCTA
AAACACTCTTAGATTGGGCTCAACAACAGTTTGACTGCTGTGGTATCGAA
GGTTTTAATGATTATCAACAACCATCGAAGAATTCAACTGATTTTTGTTA
CCAATCGGGTGGAGTAGCTTCATGTTATTCTGATAACAAGTGTGATTCCG
GAGAGCAATACAAAGAAGGCTGTAAACAGAATGTAATTGACCTTGCTGAA
AATAATATGTTGCTATGTGGAGCTGTTGCATTAGCATTCGCTGGAATTCA
AATTATTGGGATCGCACTCATCAGCCTTGGAGCGTATCTAAAATCGAAAT
ATGGAGATTACTTATCTTATAACGAGAGTGACAAATTTATATCAATGTCA
ATGTTTCTTATCATTCTTGGTCTGTTTATTTTTTTAATTGCTTTCCTCGG
ATGTTTTGGTGTTTTCAGAGAGAACCAATTTCTGATTACATGTTTTGCTG
TTTGCATGGCTGTCATTATGATCCTTGAGATTACTGCTGGAATTCTTGGT
TATGTTTATAGAGGAAAGATGGGAGGAGTATGTGTCAAGTACTCATTGCT
TATTTTCAATTTTATATTCTGGATACTTGGACTGATTCTTGCTTGCTGTC
TAATAAGAGTAATAAAATATAATTACATGTATGTTTAAGTTGAAACAATA
GTTGACAACACTTTAAATCAAGCTGTCAGTAAGTATTTTGACCAAAACCA
ACCAGGAGCTAAAACACTCTTAGATTGGGCTCAACAACAGTTTGACTGCT
GTGGTATCGAAGGTTTTAATGATTATCAACAACCATCGAAGAATTCAACT
GATTTTTGTTACCAATCGGGTGGAGTAGCTTCATGTTATTCTGATAACAA
GTGTGATTCCGGAGAGCAATACAAAGAAGGCTGTAAACAGAATGTAATTG
ACCTTGCTGAAAATAATATGTTGCTATGTGGAGCTGTTGCATTAGCATTC
GCTGGAATTCAAATTATTGGGATCGCACTCATCAGCCTTGGAGCGTATCT
AAAATCGAAATATGGAGATTACTTATCTTATAACGAGAGTGACAAATTTA
TATCAATGTCAATGTTTCTTATCATTCTTGGTCTGTTTATTTTTTTAATT
GCTTTCCTCGGATGTTTTGGTGTTTTCAGAGAGAACCAATTTCTGATTAC
ATGTTTTGCTGTTTGCATGGCTGTCATTATGATCCTTGAGATTACTGCTG
GAATTCTTGGTTATGTTTATAGAGGAAAGATGGGAGGAGTATGTGTCAAG
TACTCATTGCTTATTTTCAATTTTATATTCTGGATACTTGGACTGATTCT
TGCTTGCTGTCTAATAAGAGTAATAAAATATAATTACATGTATGTTTAAG
TTGAAACAATAGTTGACAACACTTTAAATCAAGCTGTCAGTAAGTATTTT
GACCAAAACCAACCAGGAGCTAAAACACTCTTAGATTGGGCTCAACAACA
GTTTGACTGCTGTGGTATCGAAGGTTTTAATGATTATCAACAACCATCGA
AGAATTCAACTGATTTTTGTTACCAATCGGGTGGAGTAGCTTCATGTTAT
TCTGATAACAAGTGTGATTCCGGAGAGCAATACAAAGAAGGCTGTAAACA
GAATGTAATTGACCTTGCTGAAAATAATATGTTGCTATGTGGAGCTGTTG
CATTAGCATTCGCTGGAATTCAAATTATTGGGATCGCACTCATCAGCCTT
GGAGCGTATCTAAAATCGAAATATGGAGATTACTTATCTTATAACGAGAG
TGACAAATTTATATCAATGTCAATGTTTCTTATCATTCTTGGTCTGTTTA
TTTTTTTAATTGCTTTCCTCGGATGTTTTGGTGTTTTCAGAGAGAACCAA
TTTCTGATTACATGTTTTGCTGTTTGCATGGCTGTCATTATGATCCTTGA
GATTACTGCTGGAATTCTTGGTTATGTTTATAGAGGAAAGATGGGAGGAG
TATGTGTCAAGTACTCATTGCTTATTTTCAATTTTATATTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000334XLOC_000334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000563-exon-sc0000002-1575043694:705629..705918TCONS_00000563-exon-sc0000002-1575043694:705629..705918Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1575043694:704227..704493TCONS_00000563-exon-sc0000002-1575043694:704227..704493Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1575043694:703648..703971TCONS_00000563-exon-sc0000002-1575043694:703648..703971Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1575043694:702889..703448TCONS_00000563-exon-sc0000002-1575043694:702889..703448Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1510915933:705629..705918TCONS_00000563-exon-sc0000002-1510915933:705629..705918Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1510915933:704227..704493TCONS_00000563-exon-sc0000002-1510915933:704227..704493Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1510915933:703648..703971TCONS_00000563-exon-sc0000002-1510915933:703648..703971Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1510915933:702889..703448TCONS_00000563-exon-sc0000002-1510915933:702889..703448Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1491911889:705629..705918TCONS_00000563-exon-sc0000002-1491911889:705629..705918Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1491911889:704227..704493TCONS_00000563-exon-sc0000002-1491911889:704227..704493Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1491911889:703648..703971TCONS_00000563-exon-sc0000002-1491911889:703648..703971Clytia hemisphaericaexon
TCONS_00000563-exon-sc0000002-1491911889:702889..703448TCONS_00000563-exon-sc0000002-1491911889:702889..703448Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000563-proteinTCONS_00000563-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:702889..705918 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96298	3.13884	1.43293	2.12903	5.69302	4.38279	23.1728	23.1807	13.9384	14.743	14.6858	10.6283	15.6037	12.9713	2.50656	2.72015	23.6674	31.4201	24.6887	36.7538	36.0513	31.9212	18.8507	24.1105	19.9725	26.3436	21.464	12.0065	33.1531	23.7468
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00000563 vs. Swiss-Prot (Human)
Match: CD63 (CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.238e-19
Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 3 
Query:  456 RENQFLITCFAVCMAVIMILEITAGILGYVYRGKVETIVDNTLNQAVSKYFDQNQPGAKTLLDWAQQQFDCCGIEGFNDYQQ-PS--KNST-DFCYQSGGVASCYSDNKCDSGEQYKEGCKQNVIDLAENNMLLCGAVALAFAGIQILGLILACCLIRVIKYNY 935
            +EN  L+  FA+ +++IM++E+ A I GYV+R KV +  +N   Q +  Y   N     ++LD  Q  F CCG   + D+++ PS  KN   D C  +  V    + N+      +KEGC + +      N+L+  A AL  A +++LG++ ACCL++ I+  Y
Sbjct:   77 KENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTA--SILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGINFNE---KAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGY 235
The following BLAST results are available for this feature:
BLAST of TCONS_00000563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CD631.238e-1932.93CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2[more]
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