TCONS_00000563-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000563-protein
Unique NameTCONS_00000563-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000563-protein ID=TCONS_00000563-protein|Name=TCONS_00000563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MGGVCVKYSLLIFNFIFWIIGIALISLGAYLKSKYGDYLSYNESDKFISM
SMFLIILGLFIFLIAFLGCFGVFRENQFLITCFAVCMAVIMILEITAGIL
GYVYRGKVETIVDNTLNQAVSKYFDQNQPGAKTLLDWAQQQFDCCGIEGF
NDYQQPSKNSTDFCYQSGGVASCYSDNKCDSGEQYKEGCKQNVIDLAENN
MLLCGAVALAFAGIQILGLILACCLIRVIKYNYMYV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000334XLOC_000334Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000563TCONS_00000563Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 203..229
score: 33.33
coord: 47..73
score: 31.99
coord: 8..31
score: 36.44
coord: 74..102
score: 29.93
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 2..235
e-value: 4.5E-50
score: 168.0
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 6..227
e-value: 1.8E-49
score: 168.4
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 102..201
e-value: 3.6E-13
score: 49.2
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 102..201
NoneNo IPR availableCDDcd03127tetraspanin_LELcoord: 102..201
e-value: 6.1052E-14
score: 63.6775

Blast
[Close]
BLAST of TCONS_00000563-protein vs. Swiss-Prot (Human)
Match: CD63 (CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.605e-31
Identity = 73/236 (30.93%), Postives = 125/236 (52.97%), Query Frame = 0 
Query:    2 GGVCVKYSLLIFNFIFWIIGIALISLGAYLKSKYGDYLSYNESDKFISMSMFLIILGLFIFLIAFLGCFGVFRENQFLITCFAVCMAVIMILEITAGILGYVYRGKVETIVDNTLNQAVSKYFDQNQPGAKTLLDWAQQQFDCCGIEGFNDYQQ-P--SKNS-TDFCYQSGGVASCYSDNKCDSGEQYKEGCKQNVIDLAENNMLLCGAVALAFAGIQILGLILACCLIRVIKYNY 233
            G  CVK+ L +    F    + LI++G   +      +    +   + + + +I +G+F+FL+AF+GC G  +EN  L+  FA+ +++IM++E+ A I GYV+R KV +  +N   Q +  Y   N     ++LD  Q  F CCG   + D+++ P  SKN   D C  +  V    + N+      +KEGC + +      N+L+  A AL  A +++LG++ ACCL++ I+  Y
Sbjct:    6 GMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSL-LPVVIIAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTA--SILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGINFNE---KAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGY 235
The following BLAST results are available for this feature:
BLAST of TCONS_00000563-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CD633.605e-3130.93CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2[more]
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