TCONS_00000556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000556
Unique NameTCONS_00000556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000556 ID=TCONS_00000556|Name=TCONS_00000556|organism=Clytia hemisphaerica|type=transcript|length=2343bp
aTTTATCATAGTGGTATTaaggttaaataaaaaaaaaaaaaaagagagaa
aagaaaaaaaaagagagagaacAATAGCCCTTAAAGAAAATATGCTAACA
GTCGATACGTTTACGAGTAGTAATAGTCCTCTCGAGTATACAAACGCACC
TCTGGTTACTACAACTAGTAATAAGGCTAAACTAAGTCACCGTCAAACAC
ACACGCGGGAGAGTTCAAATCAGAATAGAAAAGCAAGTAGTGCGCGTCAC
TTGGCAGAGAATTTGAGAATTCGTATTAAACCAAAACATGGAACGACAAA
CAAAAACCAATTTTGTTGTTCaacatcaaaaaatggtgaTGGTTCTAATG
AAGGATGTTGTGGGTTATTGAAGTCTACAAAGTTGGGTAAATTTTGTCGT
ACTGTTTGTAGTTGTGTTGCTCAAACGATGGCTAATCaagatgaaataaa
aattcCTGAACCGTTGGTAACAAATGGACAAGTGGATCGACGTAGAGTTT
GTATCAATATATCTGGCAAAAAATATGAGACTTTAGAAAGCACACTGGCG
AAATATCCTGAAACTTTATTGGCTTTACCACAGAGAGAATTATTTTTTGA
TAGTTTAAATggtgaatatttttttgatcgTAATAGAAAGGCATTTGGTG
CTATTTTAACTTATTGCCAAACGGGTGTACTGGTGAAGCCCGCAAATTTG
GATGATCGTATATTTGCTGCAGAATTaagattttttggttttgaagcaGA
AAGTCAAGCACATATACCACAAAACCCTATAAATGAATCCGAAAATCTAC
TAccacaaaacaaaatattacgGAAACTATGGCAGCTATTTGAATTCCCG
GACACTTCTTTCGTAGCTCGTATTGTCTCTCTTTTCTCTATGTCTGTCAT
TCTTTTATCCATTGTTATGTTCTGTATTGAAACTTTACCAGAATTTAAAG
AACCTACTTATAAAACGTGGATCGATTCAAATAATAGAACCAGAAAGGAG
GTCAAAGGATTTACAACGAAGCGTGTTTATGAGCCAGTATTCGCTACAAC
CGAGGCAGCTTGTATAGCATGGTTTACCTTTGAATATTGTATACGACTCA
TTGCATCACCTcgtaaatttcaatttttatatcAACCGTTAAATATGATT
GATTTGGTTGCGATTATACCATTTTATATCATGTTGGTGCTAAAACAGAC
AAATACAAATGTATCCAGTCTATCGATATTACGTGTACTGAGGCTAGTTC
GTGTTTTCCGTATTTTCAAATTATCAAGATACAGCAAAGGCTTGAAGATA
CTTGGTTACACATTTAGGGCCAGTTTGCAAGAGTTGGGTCTTCTGGCGTT
CTTCTTACTAATTGGCATCATTTTATTTGCATCGGCTGCTTACTATTGTG
AAGAACAAGTCAAAGACACCAAATTTCGAAGTATCATTCATGGCTTCTGG
TGGGCTATTGTTACTATGACAACTGTTGGTTATGGTGATATGACGCCTGA
AACACTAGGTGGTCAACTCGTGGGTTCATTCTGTGTGTTGGTTGGTGTCT
TAGCTATTGCATTCCCAGTACCTGTCATTGTCAACAATTTCACATATTAT
TACACGCNgctcccaaaatctgaacaaatttttacaaaatttctgaaatt
tcatttaaaacttggctcggggtgaatcataagcatgattcttaagcata
taataagcataaattattcatggatgctttgagaacttaagcatacacga
gcctgaccaaggggcatacacttgcttataaaaaaaaaaacatgtataat
aaAAGATAGCAATAGCCACAGTCTAAACTAAACGTGACAAATGTTAATTA
TTATAGATTATTTTCACAACATTAGTGTGCGGATCAACANGAATCCGATT
TAAATCCCGATATTAATCGGAATGAGACTTGTAAGAGTCGGAAGAAAAGT
GGTGCAAATGGTTTATTAAGCCTGCAAGATGACGACGAGGATGAAATTCA
TTACGATCTTGAATCACCAGTGTGAGAGGTTAACTGATAGAGTGTGTTTT
TGACCCTCCTCCTGCTACTATGAAAGGTGGCTGGAAAGGTGCTCCATAAT
TGGAAAGAACCTGTCTGATGAAATAATGGTCGAAATCCTGCTTTAAAGCT
GTTAAAAAATCTACCGACAAAACATCATGGATACTATGAATATGAAGAAG
AATCGAGTTCCACCATCCATGATTTGAATCATAGCCAGttcttgaagttt
tctttaccATCACTGGCATCGAACATAAAGCTGTAGATTTTTACAACGGA
GATCGTTAAACCAGAGATCAGAAATTTTGATACTtcgtataca
Run BLAST on NCBI

protein sequence of TCONS_00000556-protein

>TCONS_00000556-protein ID=TCONS_00000556-protein|Name=TCONS_00000556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
FIIVVLRLNKKKKKERKEKKRERTIALKENMLTVDTFTSSNSPLEYTNAP
LVTTTSNKAKLSHRQTHTRESSNQNRKASSARHLAENLRIRIKPKHGTTN
KNQFCCSTSKNGDGSNEGCCGLLKSTKLGKFCRTVCSCVAQTMANQDEIK
IPEPLVTNGQVDRRRVCINISGKKYETLESTLAKYPETLLALPQRELFFD
SLNGEYFFDRNRKAFGAILTYCQTGVLVKPANLDDRIFAAELRFFGFEAE
SQAHIPQNPINESENLLPQNKILRKLWQLFEFPDTSFVARIVSLFSMSVI
LLSIVMFCIETLPEFKEPTYKTWIDSNNRTRKEVKGFTTKRVYEPVFATT
EAACIAWFTFEYCIRLIASPRKFQFLYQPLNMIDLVAIIPFYIMLVLKQT
NTNVSSLSILRVLRLVRVFRIFKLSRYSKGLKILGYTFRASLQELGLLAF
FLLIGIILFASAAYYCEEQVKDTKFRSIIHGFWWAIVTMTTVGYGDMTPE
TLGGQLVGSFCVLVGVLAIAFPVPVIVNNFTYYYTXLPKSEQIFTKFLKF
HLKLGSG
Run BLAST on NCBI

transcript from alignment at sc0000002:503549..517499-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000556 ID=TCONS_00000556|Name=TCONS_00000556|organism=Clytia hemisphaerica|type=transcript|length=13951bp|location=Sequence derived from alignment at sc0000002:503549..517499- (Clytia hemisphaerica)
ATTTATCATAGTGGTATTAAGGTTAAATAAAAAAAAAAAAAAAGAGAGAA AAGAAAAAAAAAGAGAGAGAACAATAGCCCTTAAAGAAAATATGCTAACA GTCGATACGTTTACGAGTAGTAATAGTCCTCTCGAGTATACAAACGCACC TCTGGTTACTACAACTAGTAATAAGGCTAAACTAAGTCACCGTCAAACAC ACACGCGGGAGAGTTCAAATCAGAATAGAAAAGCAAGTAGTGCGCGTCAC TTGGCAGAGAATTTGAGAATTCGTATTAAACCAAAACATGGAACGACAAA CAAAAACCAATTTTGTTGTTCAACATCAAAAAATGGTGATGGTTCTAATG AAGGATGTTGTGGGTTATTGAAGTCTACAAAGTTGGGTAAATTTTGTCGT ACTGTTTGTAGTTGTGTTGCTCAAACGATGGCTAATCAAGATGAAATAAA AATTCCTGAACCGTTGGTAACAAATGGACAAGTGGATCGACGTAGAGTTT GTATCAATATATCTGGCAAAAAATATGAGACTTTAGAAAGCACACTGGCG AAATATCCTGAAACTTTATTGGCTTTACCACAGAGAGAATTATTTTTTGA TAGTTTAAATGGTGAATATTTTTTTGATCGTAATAGAAAGGCATTTGGTG CTATTTTAACTTATTGCCAAACGGGTGTACTGGTGAAGCCCGCAAATTTG GATGATCGTATATTTGCTGCAGAATTAAGATTTTTTGGTTTTGAAGCAGA AAGTCAAGCACATATACCACAAAACCCTATAAATGAATCCGAAAATCTAC TACCACAAAACAAAATATTACGGAAACTATGGCAGCTATTTGAATTCCCG GACACTTCTTTCGTAGCTCGTATTGTCTCTCTTTTCTCTATGTCTGTCAT TCTTTTATCCATTGTTATGTTCTGTATTGAAACTTTACCAGAATTTAAAG AACCTACTTATAAAACGTGGATCGATTCAAATAATAGAACCAGAAAGGAG GTCAAAGGATTTACAACGAAGCGTGTTTATGAGCCAGTATTCGCTACAAC CGAGGCAGCTTGTATAGCATGGTTTACCTTTGAATATTGTATACGACTCA TTGCATCACCTCGTAAATTTCAATTTTTATATCAACCGTTAAATATGATT GATTTGGTTGCGATTATACCATTTTATATCATGTTGGTGCTAAAACAGAC AAATACAAATGTATCCAGTCTATCGATATTACGTGTACTGAGGCTAGTTC GTGTTTTCCGTATTTTCAAATTATCAAGATACAGCAAAGGCTTGAAGATA CTTGGTTACACATTTAGGGTAAGCCCCACCTTATTTTTTCTCTAGGGTCC CATAAAGTTTCAGACGTTAGTTTTTAAATCCATGTTTGTTTATGATTAAA GCTTATACGGACAAAGTTTTTTTGTTTACATTTGATTTAGAGATTTTTAA ATGCGCTCTCAGTATAATTAAGTTTTCTCCTTTTTAAAAAAAGATTTGAT CTCTCTATCATCCTATTTGCTGCTTTTTTGTTAAAAAAGACTTTATTTGA AAGATCTAGCTTTAAACTCAACATGATTTTTTGAGATAGCTATCTTAAGG ATTAAGAAAAATGTCGTCAATTTTTTTTGAGATTGACAGCCTCAAATGGC TCATTCGATTGTCAGAATATAAATTTGTTTTCCAATCTACATGAGTACCT ACTCGATAAAATCTATCTACACAATCTTTACTTTATATCAAGATTTAAAT CAATGATTGAAACACTCTAGTATTTTGTGTTCAAATGTTTTTTGTGGGGT TTTGATTTAGATTATGGTAGGGCTTAAGTATCCTTAGTACTGATCCCTCT TGAGGCTACTTTTGACGTAGATTCAAGTTTGTTCCACTTCAAATTTTTCT TCTTAAATCTGTTTTAAATCCTTTTATTTGACTAATAACCAAAGTGCCCG GGATCGTAGATTTTTTAGTACATTTACTTTTCACAAAGTATTCTCAAAAC TACTTAAAAACCTGGTAACAAACACTTTTTCTTTTTCATTTATGTTTCTT TTATAAAACAATAGAAAAACAATGCGTACCTATTGTTTGAAAATAAAATC AAAAATGTATGTAATATAGTTTTGTATAAAGGGCTTCTAAAAGTTTTNTG CGATTATACCATTTTATATCATGTTGGTGCTAAAACAGACAAATACAAAT GTATCCAGTCTATCGATATTACGTGTACTGAGGCTAGTTCGTGTTTTCCG TATTTTCAAATTATCAAGATACAGCAAAGGCTTGAAGATACTTGGTTACA CATTTAGGGTAAGCCCCACCTTATTTTTTCTCTAGGGTCCCATAAAGTTT CAGACGTTAGTTTTTAAATCCATGTTTGTTTATGATTAAAGCTTATACGG ACAAAGTTTTTTTGTTTACATTTGATTTAGAGATTTTTAAATGCGCTCTC AGTATAATTAAGTTTTCTCCTTTTTAAAAAGAGATTTGATCTCTCTATCA TCCTATTTGCTGCTTTTTTGTTAAAAAAGACTTTATTTGAAAGATCTAGC TTTAAACTCAACATGATTTTTTGAGATAGCTATCTTAAGGATTAAGAAAA ATGTCGTCAATTTTTTTTGAGATTGACAGCCTCAAATGGCTCATTCGATT GTCAGAATATAAATTTGTTTTCCAATCTACATGAGTACCTACTCGATAAA ATCTATCTACACAATCTTTACTTTATATCAAGATTTAAATCAATGATTGA AACACTCTAGTATTTTGTGTTCAAATGTTTTTTGTGGGGTTTTGATTTAG ATTATGGTAGGGCTTAAGTATCCTTAGTACTGATCCCTCTTGAGGCTACT TTTGACGTAGATTCAAGTTTGTTCCACTTCAAATTTTTCTTCTTAAATCT GTTTTAAATCCTTTTATTTGACTAATAACCAAAGTGCCCGGGATCGTAGA TTTTTTAGTACATTTACTTTTCACAAAGTATTCTCAAAACTACTTAAAAA CCTGGTAACAAACACTTTTTCTTTTTCATTTATGTTTCTTTTATAAAACA ATAGAAAAACAATGCGTACCTATTGTTTGAAAATAAAATCAAAAATGTAT GTAATATAGTTTTGTATAAAGGGCTTCTAAAAGTTTCAAGAAAAACTTTG TGTTTAGTTAATTTTTTCAACAAATCTAATTAGAACTTCTACCTCGCATA GCTCTTCGGAATAGAGGCACCATTAATGGAAAATTCCATCTCTCTTATCA TACAAACCTTTTTTTAATTGATCTTTTTATAGTGGTCAAATTAAAGTGCC TCAGGACCACTTTTTTTAATGTTTTCAAGTTGCTGTGTCTTTTAAGTTGT TAATCAAAATGTGGAGAGATAAAAAACAACAACAATAACGCATTTATTAG GGTTCTGTGTGTGAATTTTTTCTCAATTTTATGATTTTTTGACAGTTCCT TTGTCATTTCTGATTGTAAAATTTGACAATTAAGTCAGCCCCTTTTGAAA AACTGCAGTGTCTTCTGAAAGGATGTTTTCACAGACNATGATTTTTTGAG ATAGCTATCTTAAGGATTAAGAAAAATGTCGTCAATTTTTTTTGAGATTG ACAGCCTCAAATGGCTCATTCGATTGTCAGAATATAAATTTGTTTTCCAA TCTACATGAGTACCTACTCGATAAAATCTATCTACACAATCTTTACTTTA TATCAAGATTTAAATCAATGATTGAAACACTCTAGTATTTTGTGTTCAAA TGTTTTTTGTGGGGTTTTGATTTAGATTATGGTAGGGCTTAAGTATCCTT AGTACTGATCCCTCTTGAGGCTACTTTTGACGTAGATTCAAGTTTGTTCC ACTTCAAATTTTTCTTCTTAAATCTGTTTTAAATCCTTTTATTTGACTAA TAACCAAAGTGCCCGGGATCGTAGATTTTTTAGTACATTTACTTTTCACA AAGTATTCTCAAAACTACTTAAAAACCTGGTAACAAACACTTTTTCTTTT TCATTTATGTTTCTTTTATAAAACAATAGAAAAACAATGCGTACCTATTG TTTGAAAATAAAATCAAAAATGTATGTAATATAGTTTTGTATAAAGGGCT TCTAAAAGTTTCAAGAAAAACTTTGTGTTTAGTTAATTTTTTCAACAAAT CTAATTAGAACTTCTACCTCGCATAGCTCTTCGGAATAGAGGCACCATTA ATGGAAAATTCCATCTCTCTTATCATACAAACCTTTTTTTAATTGATCTT TTTATAGTGGTCAAATTAAAGTGCCTCAGGACCACTTTTTTTAATGTTTT CAAGTTGCTGTGTCTTTTAAGTTGTTAATCAAAATGTGGAGAGATAAAAA ACAACAACAATAACGCATTTATTAGGGTTCTGTGTGTGAATTTTTTCTCA ATTTTATGATTTTTTGACAGTTCCTTTGTCATGTCTGATTGTAAAATTTG ACAATTAAGTCAGCCCCTTTTGAAAAACTGCAGTGTCTTCTGAAAGGATG TTTTCACAGAAACATATGACCTATTACTACATATATTAGACTTATTAAGT GCATATGTGGTCGAGGTTTTTAATACAAAGGCACTTTAAAGTACCATTAG AGACTACACTATTTAATGAGCTGAAAGTAAATTTCCGTAATTAGGGATTA AGTTTTTTGATGAATGGGGATTTGTGTTAGTTTAGGTTATATATGAGATT GCTTAAGTAATGCATAGTATAGTCGGTACCAATCATTTACAGATATATAC CACCAAAGTCCTTACTAGAGGTTTATCAATAAAATTGCATTCTCTACTTG TGAGATTGGAAGTAATGTTAAATCCATATTACAGGCTCATTTTGGAGATT GATTTTTTAAAGATATTCTTTATATCTTTTTGAATATTTTATCTTCAAAT AAAAAGTCAAAAATCTTGATTTAAGGTCTTGATCTTCTTAACATCAAGAC TGGCGAGATGTGATAAAAAAATTAAAGTAACACTGTTTAGATTATAAATC TTATGGAAAAATGAGAGAAAAAAACCAACAGTTTTTAATAAAATAACGAT CGATTTGTTTATATAGTGGACTTAAATCTCCTACGTTGTTTGATGATTGA CTGATGGATGCTAATAAGATAGTGTTTTAATATGTGTGACCTCAAGTGTC TCAAAAAGTCATAAATATAAAAAATCTTGACACGATGTTTAAACCCAAGA AAGAAATCTCTTTTTACTAGATAACTATCATAGTGAGCAACAGTGGCGGC CTGGCAGGGGGTGCAGGGTGTGCAGTGCACCACCCAGAAAGACCTGAGAG GGGCGCCAAAAAAGCTTTTCAAGGGGGCGCCAAAACTCTTTTTGATGTTT GGTTGGGCGATTTTGCGCCCTTTGACACGTTTTTTTAGCGTCTTCTATAA GTGCAATGTAAATTTTTTCGCCTGCGGCGCTTCGTTTTATTTTACGAATT TTTTCAAAACTACTATCAACATTTAATTGCGATAATTCAAAGCAAGAGAA GTGTTGTGTATCCACCAGGGGTTAAAGGGGATGCTCACCTTCAAAATGAG AGATTGATCAAAACTGCTCGATGTGGTTTATGTGGTCTTATGCGGACTAA CTTTCTCCTTTTAAGAATATCTTATAAGCTGTTTGATCTTTCTTACACAA AAATTTTTTGCCTGCGGCGCCAGAATTAGAAACAACCCTTATTCTTGCCA ACTTTAGAATTTTTGGGCCCTCTTTCAGCCATTGATCTTTAATGATAAAT AAAAGTTTGTTAACTCAGAGATTCCGGGCGTTACTTTCAACCAGTCACTG CTCTTACAGTAGTTTCACTTAATGGTATAGGGCGCAAACGAGGACAAAAA TACCAGGGGCGCCAATTTCATAGTTTGCACCACCAAGAAAATTAAGCCAG GCCGCTACTGGTGAGCAACACCAATAAGAATACACGTTTTTTTATAAGAA CATCCAAAAATTTTGAAGCCTTAGGATGTTCATAGCTTTTTGAGTTTTTA GCCTAAAAATGTTCTTAACATGTTCTTGTTTTCACCATTTTTTGAGTATT TTTGTGCGCGTTTTTCTTAAGAAATTCGGTGTTTTAGAGTCCTTAAAGCT TTAAAATGTCTTAACTTGTTCTTAACAATTTGGCCATTGAAGGCTTATGT TCTTATATAGTTTGTTCTTATTAAAAAAAAACGTGTACCTTTTCATACTA GTTTGAGATTTTCAGCTTGTTAAATTGAGTTAAATTTCATTCGCTTTAAA AGTGTGCACTAATTCTTATTTTGCTTAAAATTTTCATAAACGTTCTATCG TTGAAAAGATATTTTCAATTTTTCAATAAAGAAATTAAATTTATATCCTT TTATGATAATAACTTTTTGATACAGAGGTACTTTGAACCTTGAGGATTCC ATAAATGCAATAATTTTTCCACAGCTTTGTATTGTTAAAAGCTTAGAAAG TTACATACAGCATGCTTATTCATCTTCTTTATTGATTGAAATCTTTTGAA GTATGTCGTCTTTCTAATGAAAAAAAGCATATGCAAGGTATATCAATACA CCCGCCCTTCTCACAGACTCAGTAAAATAACGGACCAAAACTCGATGGGG ATTTATATTCCCATATTTTGTATAGCTGGAGATTCATATTCTTTTGTTTT CAAGTCAGAAAATTGTGTGGGGATGGGAAAAATTGCATAATATTTTTGGT TTATTTGATTATTTTTGGTGAGAACAAAAATTTAAGTATAATTTTCCACT GGGGACAATATTTTGGCCAATTTTTCCAGTGGGAAGGGGTCCCAGTGGGT CTGTGAGAAGGGGTATATCAATTGGGCTGTTCTAGAAAAATTTTTAATTG GTGAGGTCATATTTTACAACAAGATACAGTACAAAGAACTTCATTACAAA TCTGTCTAACATGTAGTCTACTTTGAGATAAGATCTCACTGCTTTTGGCT TGTCACGCAACAGAAAAAAAAATCGTCTCATAGTTCACCAACACTTCAAG TGTAGTCGAAATTTCTCTTGTCTGTTTTAAATATCCCCGTGACATGTATG TCTTTGTTAGATAAACTCTTTTCGACCATCCACCCCCAGGGTGTGCTATA CATTCAAATTCTCCTTTGCTTCTCAATGTTAAAGACAGTTTTGTGATTTA TTGTATTTCATTTCAGGTAACTGTATTATAAGACTAAGCTATAAAAGTAA TTGAAACTTAACACTTAACAGACCTTTATAATTTAACTTGACCAACTTGT TCTCTGCTTATGAGCTTGTAAAGTCAAAATTCACTTTTCTAAAAGTGTAA AAAACACGTAAAAAAGAGGTATCAAATTTGGTATTTTTAGACGTTTTTGA TATACAGTTTTTGAAAAAAATCTATGAAAGCGCCAGTTTTTATAAAAACT AGTCTAGTTTTAAACAAAAATTACTTTCAAAGGTGTTTTTATTAATTATT AATGTCATAAAACTCGTTAAATAAGTCAATTTGTAATGATTTTCTAATTG ATTGCATGAATTTAATACCTCTTTTTTACGTGTTTTTTACACTTTTAGAA AAGTGAATTTTGACTTTAAAAGCTCAAAAGTAGAGAACAAGTTGGTCAAA TTTAAAAAGTGATGGCTAAAATTTTAAGTTAGGATATTTACTTTCTAAAT ATCAAAACTCCAAGCACTTTGGGACATTTGTTCGGCCTCAGGACGTCGGG AAACGTCTGAACTTTTTCGTGGGTCACCCGATATGTTTTTATATTTGATT TAAGCTTTTAAAAGAAATTCTATATGTACTAGGATATACCCTACGCATTT TCTTGACTTTGACAGCTCCTACGTTTGGTTATTTCAATTGCTTTTCTTAT AATTAAAGAAATACACATTGCAAACCTTATCATTGAATTTATTATTGTTA AACTGAGACGATTTCATGTAGGTCTGTCTTCTTAAGAAATTATTAAAAAA AGAGGCGGGTATCATTAAAATGATTGGCATCTTTTAATATGGGAAATCGG AAAAAAAATATCAGTTTTTCTTCAGCAAAGCCTCGATGTTGAGATTCGGA AGCATTTGTATTTTTTGTGTTGATAAGTCTTTTTTGTAATCAATTCATGA AATGAATGACATAGACAGTCTCTTGGTGATATATTTTCCTGTCGTCATCA AATTTTTCTTGGTTTAGAAAAATACAAGTGTTGTATTAAATTCATTTTCC CTTAAATCCGGTGAAACGCTTTATCAAGCTCATGTTAATGCTCAGTTACA ATTCTGAAAAGACTTGTTTTAATTAAGTGACTTTCAAATTGAAATAAAGT CGTTGCTTGAATTCTGCAGTTGAACTTTGAGTTGAAGATGGTTAAGGTGT CTCGTTTTCAAGACATCTCGGATATTTCATGACGTCACTATATACCTAAC AAATCTCAGATACTTAGAATCACGGATATTCACTTAAAAATTGGTCAGCT CGCTCGGATGTATTGTCTGATTTGAAAAGTCATATCATATTATATCGCCT CATCCGCACGAGCTTCCCCTATTTTCAAATGTATAAGCTTAAAAGCCAGT TGGCACTCTTTTTTGTAAGAACAAGGAATGGATTGGCAGTTTTTTGAGAC TTTGAGCCACAATTGGGGTTTACCATATACACACCCCCTTCTCACAGACC CAGTAAAATTTTTTCATTCATTGGGGGTAAAAATAACGGACTGAAACTCG ATGGGGATCGATATTCCCTTATTTTTAATGACTGGGGATTTAAATTCTTT TGTTTTATAAGTCAGTAAATTCAGTGGGGATGGTAAAAATAACATAATAT TTTGTAGTGAGGATTGGTTTATTTGATTATTTTCAATGGGGACAAAAATT GGTGTATAATTTTCCACCGGGGACGATTTTTTGTCCAGTGGGAAGGGTTC CCAGTGGGTCTGTGAGAAGTGGGTGTATATACTATTTAAGGGTAAATGAA GAATTTTATTTTAACTTTACCCTTCATTTACTTGAAAAATGAAGCCGTTC TTGACTTGGGTTGTTGTTCAATTTCTTTAGTACATCGTTAATTAGTCATA TGCTAGATTGGATGATTGCAGTAAGCTTTTGCTCAGGATTCTCTCCGAAT TAAGATCATAATGACCAATAATTGGCTTCTTACAAAAACTGTTCATTACA TCATACTTTGAAGATGGAGCAGTAATGCTCTCCTATTCTTTAGAAGGGAA TAAAATGTTACATAACCAATATTCGTTTTAAGAAGGCTCGTCTTATGACA TTGGCTCAATATTCGTGACGTTCATGACGTAATGTTTTATACGGAAGCAC CGTAAAAGACCGGGTGTTTGCCACTAATTCTGAATTTGTACAATAAAACT AGTGGCAAACGCCCGGGCAATTTAGCGTATAAAACATTACGTCATGAATA TCATCAAATGGAATACTATGATGTTTCTATCTCATTTGACCTTGTTCTTT GAACTAAACTGATCCAAACTCCATATAGTCAAGTTATCATAGTGAAGGCT GTTTTGTATGAATGCAATTATGTGTATTTTTGAAGCGTGACCATCAAAAT ATTGTATTTCTTGTGAAGGTCAAATTATTTGACTCTGACACAGCCAAGTT TAAGTGGGGTGTCTTAAAATCGAAATACCGTCCAGACTTTGGGAATATAC CCTATTACACAAGTTATTAAACGCGAATCGGTTACCCTCGCTTTAATTAC AACCGTTTAACAAAGTGTGAGCCGTGGTAATTTTCGAAAACTCTTGCACC TTAATAAATTGTAGCATTCATTTTTCCCGCGTTAAATACCTGATTAGTAA GTGTAATAAGGTAATTTTCCTTTCTAAATATTCCTCAGAGCGATAATGTA ACTGTAAGTGATAAACTATATAATAGTTGATATAGAAGATTCTTTTAGTT CGGGGATGCTTTTTTAGTTTACTTCGTGTCTATGTGTCTTAACGCCGTTA AAGTTTAACACATTCACTTTTTGCAACCAAAGTCTTCCGCAAAACCTGTG GAAAAATTGAAATATTGGCAGACCTACCTAATCGAAGTAACGAAAGTGCC AAATGAATTTCAAATTTAGAAATTTGAAAAGAAGTAAAAAATTTCAAATT TCAAAATTTGAAAAATGAAAAATACAAAAAAATTTTGATTTTCAAATTTT GAAATTTGAAAATTTTTACTTCATTTTAAATTTCAAAATTTGAAAAATGA AAAATACAAAAAAATTTTGATTTTCAAATTTTGAAATTTGAAAATTTTTA CTTCATTTTAAATTTCAAAATTTGAAAAATGAAAAATACAAAAAAATTTT GATTTTCAAATTTTGAAATTTGAAAATTTTTACTTCATTTTAAATTTCAA AATTTGAAAAATGAAAAATACAAAAAAATTTTGATTTTCAAATTTTGAAA TTTGAAAATTTTTACTTCATTTTAAATTTCAAAATTTGAAAAATGAAAAA TACAAAAAAATTTTGATTTTCAAATTTTGAAATTTGAAAATTTTTACTTC ATTTTAAATTTCAAAATTTGAAAAATGAAAAATACAAAAAAATTTTGATT TTCAAATTTTGAAATTTGAAAATTTTTACTTCATTTTAAATTTCAAAATT TGAAAAATGAAAAATACAAAAAAATTTTGATTTTCAAATTTTGAAATTTG AAAATTTTTACTTCATTTTAAATTTCAAAATTTGAAAAATGAAAAATACA AAAAAATTTTGATTTTCAAATTTTGAAATTTGAAAATTTTTACTTCATTT TAAATTTCAAAATTTGAAAAATGAAAAATACAAAAAAATTTTGATTTTCA AATTTTGAAATTTGAAAATTTTTACTTCATTTTAAATTTCAAAATTTGAA AAATGAAAAATACAAAAAAATTTTGATTTTCAAATTTTGAAATTTGAAAA TTTTTACTTCATTTTAAATTTCAAAATTTGAAAAATGAAAAATACAAAAA AATTTTGATTTTCAAATTTTGAAATTTGAAAATTTTTACTTCATTTTAAA TTTCAAAATTTGAAAAATGAAAAATACAAAAAAATTTTGATTTTCAAATT TTGAAATTTGAAAATTTTTACTTCATTTTAAATTTCAAAATTTGAAAATC AAAATTTTTTTGTATTTTTCATTTTTCAAATTTTGAAATTTGAAAATTTT TACTTCATTTTAAATTTCAAAATTTGAAAATCATTTGGCACTTTCGTTAC TTCGATTCTACCTATCGAAACACTCTCCAAAACATTGAAAATTCAAGCGC TCGCGCGTCGCGCTGTTAGTACTTGTTTATTATTGCAAGAAACATTTCAA TAAATGTTGAATGGAAGTTAACATTGATTATTTTTGTCTCTCTGTCTCTC TAGAATATCATTAATAATAAGGAAAAATTCGTTTTAAATGTTAATCCATG TTCTAATTGTTTGATTCATAAAGAGATGTACAAGTTCACATGTTTCTTAT TCACAGTTGCAACTGTGAGGGCACAGCTTCTTTTCGGCTGGCCTAACCTA CCCAAAAGGTTTTGAAAAGCATTAGTTAAACAAACTTTGTCAATCTTTAC GTCATGATATTATAATATGTCATTTATTTCATTTTTCTTGTAAGCTTGTA AATGACTACCCTTTTGGTCAGTTTTTTTTCAATGCTCGATGCACGTTATT TCAAATTCTTTACTGTACTTCCCAGCCCAGGGGGGGAGACTCGACTCAAA GACGACCTTATGTGCGGTTCAAAATTAGGCCTTTGGAATAGGACCCTTAC AGTGCAAAAAGAAAATGTGGCTAAATTTGAGTCAATTTGGGCGAAAAATT GACCCTTACGGTGTGTTTTTTTGAAATTTTTCGACCATATTAAGAGGTCG ATGTCTAAGTAGAAGACAAACTGAATTTTCAATCAACCATAAATTCTAGT TCACCTAGGCCGTTTAACTTGTACAGAATATACCCAATTAAATTCTTCTT AAAGCGACCGTAGTGCAGTGGTAGAGCATCCGGCTACGGTTCACAAGGTT GTGGGTTCAATCCCCAGCCGGATCATACCAAAGATTCCCAAAATGGTACT TGATGCCTCTCTGTAAGTGGAGCAATCCAGGGAGAAAGAGTGGCGCCCTC CCCTACCTTCGGGTAGATAGCTATCGAAAGAGGAGCGGTCACAGACTTAC TTACTACATTCTTCTTCAACTATTACGATCTCATTAGAAATCTCTTCTAG ATATTCTGAACCACTTTTTTCATTCTTTACCTTTTACAGGCCAGTTTGCA AGAGTTGGGTCTTCTGGCGTTCTTCTTACTAATTGGCATCATTTTATTTG CATCGGCTGCTTACTATTGTGAAGAACAAGTCAAAGACACCAAATTTCGA AGTATCATTCATGGCTTCTGGTGGGCTATTGTTACTATGACAACTGTTGG TTATGGTGATATGACGCCTGAAACACTAGGTAATTCACGTGGACAGTTCT TACCACATACATGGCATGGTGTTTTTTTTCACTTTTAAAGGCCGGTCTCC ACTTGCGCGCGTTGCGATCGCACTTTTTGGCTTCAATCCTTTTTGCTGGG AAAAAATAGATTACGTCATAAAAATGTAGCGCGCGCTCGAAAAAATAGTT GAACACATTTCAACTTTTTTCAACCGTTACGTCAGATCGTGCCATTTTTC ATTTGACCAATAGCGTGGAAGCTTTACTCGAAAAAGTGCGATCGAAGCAC GCGCAAGTGGAGACTAGCCTTAAAGCTAAAGTAAGTTATTCGGGAAAGCT TCTTACTATTTTATCTATATACACGTTTTCTTATAAGAACATCTAAAATC TTTGAAGCCTTTCTAAACTCTTTTTAGTTTTAGGCCTAAAGTGTTTTTTT AAATGTTTCTATTTTCACCATTTTTGTGAAAGTTTTGTGCCATTTCCTGA AGAAATTTGGTGTTTTAGGGTCCTTGAAGCCTTAAAAAGTCATTGTTAAC TGAAGGGACTATTGACCTTGTTCGAGTTAAAAAGGCATTCGAGTTATAAA GGTTTGAGCTTAAGAGAATCTACTATAGTAAGAAAAATTGTGATTGTAAT TCGTTTTCCACATTGATAACAATATTCTACCATAAAATATACATTATATA TCTTTTCATATTTCAGGTGGTCAACTCGTGGGTTCATTCTGTGTGTTGGT TGGTGTCTTAGCTATTGCATTCCCAGTACCTGTCATTGTCAACAATTTCA CATATTATTACACGCNGCTCCCAAAATCTGAACAAATTTTTACAAAATTT CTGAAATTTCATTTAAAACTTGGCTCGGGGTGAATCATAAGCATGATTCT TAAGCATATAATAAGCATAAATTATTCATGGATGCTTTGAGAACTTAAGC ATACACGAGCCTGACCAAGGGGCATACACTTGCTTATAAAAAAAAAAACA TGTATAATAAAAGATAGCAATAGCCACAGTCTAAACTAAACGTGACAAAT GTTAATTATTATAGATTATTTTCACAACATTAGTGTGCGGATCAACANGA ATCCGATTTAAATCCCGATATTAATCGGAATGAGACTTGTAAGAGTCGGA AGAAAAGTGGTGCAAATGGTTTATTAAGCCTGCAAGATGACGACGAGGAT GAAATTCATTACGATCTTGAATCACCAGTGTGAGAGGTTAACTGATAGAG TGTGTTTTTGACCCTCCTCCTGCTACTATGAAAGGTGGCTGGAAAGGTGC TCCATAATTGGAAAGAACCTGTCTGATGAAATAATGGTCGAAATCCTGCT TTAAAGCTGTTAAAAAATCTACCGACAAAACATCATGGATACTATGAATA TGAAGAAGAATCGAGTTCCACCATCCATGATTTGAATCATAGCCAGTTCT TGAAGTTTTCTTTACCATCACTGGCATCGAACATAAAGCTGTAGATTTTT ACAACGGAGATCGTTAAACCAGAGATCAGAAATTTTGATACTTCGTATAC A

Coding sequence (CDS) from alignment at sc0000002:503549..517499-

>TCONS_00000556 ID=TCONS_00000556|Name=TCONS_00000556|organism=Clytia hemisphaerica|type=CDS|length=5022bp|location=Sequence derived from alignment at sc0000002:503549..517499- (Clytia hemisphaerica)
GTGGTCAACTCGTGGGTTCATTCTGTGTGTTGGTTGGTGTCTTAGCTATT
GCATTCCCAGTACCTGTCATTGTCAACAATTTCACATATTATTACACGCN
GCTCCCAAAATCTGAACAAATTTTTACAAAATTTCTGAAATTTCATTTAA
AACTTGGCTCGGGGTGAGCCAGTTTGCAAGAGTTGGGTCTTCTGGCGTTC
TTCTTACTAATTGGCATCATTTTATTTGCATCGGCTGCTTACTATTGTGA
AGAACAAGTCAAAGACACCAAATTTCGAAGTATCATTCATGGCTTCTGGT
GGGCTATTGTTACTATGACAACTGTTGGTTATGGTGATATGACGCCTGAA
ACACTAGTTTATCATAGTGGTATTAAGGTTAAATAAAAAAAAAAAAAAAG
AGAGAAAAGAAAAAAAAAGAGAGAGAACAATAGCCCTTAAAGAAAATATG
CTAACAGTCGATACGTTTACGAGTAGTAATAGTCCTCTCGAGTATACAAA
CGCACCTCTGGTTACTACAACTAGTAATAAGGCTAAACTAAGTCACCGTC
AAACACACACGCGGGAGAGTTCAAATCAGAATAGAAAAGCAAGTAGTGCG
CGTCACTTGGCAGAGAATTTGAGAATTCGTATTAAACCAAAACATGGAAC
GACAAACAAAAACCAATTTTGTTGTTCAACATCAAAAAATGGTGATGGTT
CTAATGAAGGATGTTGTGGGTTATTGAAGTCTACAAAGTTGGGTAAATTT
TGTCGTACTGTTTGTAGTTGTGTTGCTCAAACGATGGCTAATCAAGATGA
AATAAAAATTCCTGAACCGTTGGTAACAAATGGACAAGTGGATCGACGTA
GAGTTTGTATCAATATATCTGGCAAAAAATATGAGACTTTAGAAAGCACA
CTGGCGAAATATCCTGAAACTTTATTGGCTTTACCACAGAGAGAATTATT
TTTTGATAGTTTAAATGGTGAATATTTTTTTGATCGTAATAGAAAGGCAT
TTGGTGCTATTTTAACTTATTGCCAAACGGGTGTACTGGTGAAGCCCGCA
AATTTGGATGATCGTATATTTGCTGCAGAATTAAGATTTTTTGGTTTTGA
AGCAGAAAGTCAAGCACATATACCACAAAACCCTATAAATGAATCCGAAA
ATCTACTACCACAAAACAAAATATTACGGAAACTATGGCAGCTATTTGAA
TTCCCGGACACTTCTTTCGTAGCTCGTATTGTCTCTCTTTTCTCTATGTC
TGTCATTCTTTTATCCATTGTTATGTTCTGTATTGAAACTTTACCAGAAT
TTAAAGAACCTACTTATAAAACGTGGATCGATTCAAATAATAGAACCAGA
AAGGAGGTCAAAGGATTTACAACGAAGCGTGTTTATGAGCCAGTATTCGC
TACAACCGAGGCAGCTTGTATAGCATGGTTTACCTTTGAATATTGTATAC
GACTCATTGCATCACCTCGTAAATTTCAATTTTTATATCAACCGTTAAAT
ATGATTGATTTGGTTGCGATTATACCATTTTATATCATGTTGGTGCTAAA
ACAGACAAATACAAATGTATCCAGTCTATCGATATTACGTGTACTGAGGC
TAGTTCGTGTTTTCCGTATTTTCAAATTATCAAGATACAGCAAAGGCTTG
AAGATACTTGGTTACACATTTAGGGTGGTCAACTCGTGGGTTCATTCTGT
GTGTTGGTTGGTGTCTTAGCTATTGCATTCCCAGTACCTGTCATTGTCAA
CAATTTCACATATTATTACACGCNGCTCCCAAAATCTGAACAAATTTTTA
CAAAATTTCTGAAATTTCATTTAAAACTTGGCTCGGGGTGAGCCAGTTTG
CAAGAGTTGGGTCTTCTGGCGTTCTTCTTACTAATTGGCATCATTTTATT
TGCATCGGCTGCTTACTATTGTGAAGAACAAGTCAAAGACACCAAATTTC
GAAGTATCATTCATGGCTTCTGGTGGGCTATTGTTACTATGACAACTGTT
GGTTATGGTGATATGACGCCTGAAACACTAGTTTATCATAGTGGTATTAA
GGTTAAATAAAAAAAAAAAAAAAGAGAGAAAAGAAAAAAAAAGAGAGAGA
ACAATAGCCCTTAAAGAAAATATGCTAACAGTCGATACGTTTACGAGTAG
TAATAGTCCTCTCGAGTATACAAACGCACCTCTGGTTACTACAACTAGTA
ATAAGGCTAAACTAAGTCACCGTCAAACACACACGCGGGAGAGTTCAAAT
CAGAATAGAAAAGCAAGTAGTGCGCGTCACTTGGCAGAGAATTTGAGAAT
TCGTATTAAACCAAAACATGGAACGACAAACAAAAACCAATTTTGTTGTT
CAACATCAAAAAATGGTGATGGTTCTAATGAAGGATGTTGTGGGTTATTG
AAGTCTACAAAGTTGGGTAAATTTTGTCGTACTGTTTGTAGTTGTGTTGC
TCAAACGATGGCTAATCAAGATGAAATAAAAATTCCTGAACCGTTGGTAA
CAAATGGACAAGTGGATCGACGTAGAGTTTGTATCAATATATCTGGCAAA
AAATATGAGACTTTAGAAAGCACACTGGCGAAATATCCTGAAACTTTATT
GGCTTTACCACAGAGAGAATTATTTTTTGATAGTTTAAATGGTGAATATT
TTTTTGATCGTAATAGAAAGGCATTTGGTGCTATTTTAACTTATTGCCAA
ACGGGTGTACTGGTGAAGCCCGCAAATTTGGATGATCGTATATTTGCTGC
AGAATTAAGATTTTTTGGTTTTGAAGCAGAAAGTCAAGCACATATACCAC
AAAACCCTATAAATGAATCCGAAAATCTACTACCACAAAACAAAATATTA
CGGAAACTATGGCAGCTATTTGAATTCCCGGACACTTCTTTCGTAGCTCG
TATTGTCTCTCTTTTCTCTATGTCTGTCATTCTTTTATCCATTGTTATGT
TCTGTATTGAAACTTTACCAGAATTTAAAGAACCTACTTATAAAACGTGG
ATCGATTCAAATAATAGAACCAGAAAGGAGGTCAAAGGATTTACAACGAA
GCGTGTTTATGAGCCAGTATTCGCTACAACCGAGGCAGCTTGTATAGCAT
GGTTTACCTTTGAATATTGTATACGACTCATTGCATCACCTCGTAAATTT
CAATTTTTATATCAACCGTTAAATATGATTGATTTGGTTGCGATTATACC
ATTTTATATCATGTTGGTGCTAAAACAGACAAATACAAATGTATCCAGTC
TATCGATATTACGTGTACTGAGGCTAGTTCGTGTTTTCCGTATTTTCAAA
TTATCAAGATACAGCAAAGGCTTGAAGATACTTGGTTACACATTTAGGGT
GGTCAACTCGTGGGTTCATTCTGTGTGTTGGTTGGTGTCTTAGCTATTGC
ATTCCCAGTACCTGTCATTGTCAACAATTTCACATATTATTACACGCNGC
TCCCAAAATCTGAACAAATTTTTACAAAATTTCTGAAATTTCATTTAAAA
CTTGGCTCGGGGTGAGCCAGTTTGCAAGAGTTGGGTCTTCTGGCGTTCTT
CTTACTAATTGGCATCATTTTATTTGCATCGGCTGCTTACTATTGTGAAG
AACAAGTCAAAGACACCAAATTTCGAAGTATCATTCATGGCTTCTGGTGG
GCTATTGTTACTATGACAACTGTTGGTTATGGTGATATGACGCCTGAAAC
ACTAGTTTATCATAGTGGTATTAAGGTTAAATAAAAAAAAAAAAAAAGAG
AGAAAAGAAAAAAAAAGAGAGAGAACAATAGCCCTTAAAGAAAATATGCT
AACAGTCGATACGTTTACGAGTAGTAATAGTCCTCTCGAGTATACAAACG
CACCTCTGGTTACTACAACTAGTAATAAGGCTAAACTAAGTCACCGTCAA
ACACACACGCGGGAGAGTTCAAATCAGAATAGAAAAGCAAGTAGTGCGCG
TCACTTGGCAGAGAATTTGAGAATTCGTATTAAACCAAAACATGGAACGA
CAAACAAAAACCAATTTTGTTGTTCAACATCAAAAAATGGTGATGGTTCT
AATGAAGGATGTTGTGGGTTATTGAAGTCTACAAAGTTGGGTAAATTTTG
TCGTACTGTTTGTAGTTGTGTTGCTCAAACGATGGCTAATCAAGATGAAA
TAAAAATTCCTGAACCGTTGGTAACAAATGGACAAGTGGATCGACGTAGA
GTTTGTATCAATATATCTGGCAAAAAATATGAGACTTTAGAAAGCACACT
GGCGAAATATCCTGAAACTTTATTGGCTTTACCACAGAGAGAATTATTTT
TTGATAGTTTAAATGGTGAATATTTTTTTGATCGTAATAGAAAGGCATTT
GGTGCTATTTTAACTTATTGCCAAACGGGTGTACTGGTGAAGCCCGCAAA
TTTGGATGATCGTATATTTGCTGCAGAATTAAGATTTTTTGGTTTTGAAG
CAGAAAGTCAAGCACATATACCACAAAACCCTATAAATGAATCCGAAAAT
CTACTACCACAAAACAAAATATTACGGAAACTATGGCAGCTATTTGAATT
CCCGGACACTTCTTTCGTAGCTCGTATTGTCTCTCTTTTCTCTATGTCTG
TCATTCTTTTATCCATTGTTATGTTCTGTATTGAAACTTTACCAGAATTT
AAAGAACCTACTTATAAAACGTGGATCGATTCAAATAATAGAACCAGAAA
GGAGGTCAAAGGATTTACAACGAAGCGTGTTTATGAGCCAGTATTCGCTA
CAACCGAGGCAGCTTGTATAGCATGGTTTACCTTTGAATATTGTATACGA
CTCATTGCATCACCTCGTAAATTTCAATTTTTATATCAACCGTTAAATAT
GATTGATTTGGTTGCGATTATACCATTTTATATCATGTTGGTGCTAAAAC
AGACAAATACAAATGTATCCAGTCTATCGATATTACGTGTACTGAGGCTA
GTTCGTGTTTTCCGTATTTTCAAATTATCAAGATACAGCAAAGGCTTGAA
GATACTTGGTTACACATTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000329XLOC_000329Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000556-proteinTCONS_00000556-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000556-exon-sc0000002-1575043694:516182..517499TCONS_00000556-exon-sc0000002-1575043694:516182..517499Clytia hemisphaericaexon
TCONS_00000556-exon-sc0000002-1575043694:505071..505260TCONS_00000556-exon-sc0000002-1575043694:505071..505260Clytia hemisphaericaexon
TCONS_00000556-exon-sc0000002-1575043694:503549..504383TCONS_00000556-exon-sc0000002-1575043694:503549..504383Clytia hemisphaericaexon
TCONS_00000556-exon-sc0000002-1510915933:516182..517499TCONS_00000556-exon-sc0000002-1510915933:516182..517499Clytia hemisphaericaexon
TCONS_00000556-exon-sc0000002-1510915933:505071..505260TCONS_00000556-exon-sc0000002-1510915933:505071..505260Clytia hemisphaericaexon
TCONS_00000556-exon-sc0000002-1510915933:503549..504383TCONS_00000556-exon-sc0000002-1510915933:503549..504383Clytia hemisphaericaexon
TCONS_00000556-exon-sc0000002-1491911889:516182..517499TCONS_00000556-exon-sc0000002-1491911889:516182..517499Clytia hemisphaericaexon
TCONS_00000556-exon-sc0000002-1491911889:505071..505260TCONS_00000556-exon-sc0000002-1491911889:505071..505260Clytia hemisphaericaexon
TCONS_00000556-exon-sc0000002-1491911889:503549..504383TCONS_00000556-exon-sc0000002-1491911889:503549..504383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:503549..517499 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.68208 4.77192 2.32015 1.69396 37.1168 25.4845 26.6363 31.6833 11.0565 20.8462 10.2207 8.63643 15.6685 11.3858 5.62683 7.43624 11.5027 13.3431 15.2693 15.9743 23.9213 21.2763 11.7475 14.0841 10.7377 9.70487 14.5363 6.37539 6.63378 7.68428
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR003968K_chnl_volt-dep_Kv
IPR003972K_chnl_volt-dep_Kv1
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
Blast
BLAST of TCONS_00000556 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 9.521e-91
Identity = 190/394 (48.22%), Postives = 261/394 (66.24%), Query Frame = 2
Query:  491 RRVCINISGKKYETLESTLAKYPETLLALPQREL-FFDSLNGEYFFDRNRKAFGAILTYCQTG-VLVKPANLDDRIFAAELRFF--GFEAESQAHIPQNPINESENLLPQNKILRKLWQLFEFPDTSFVARIVSLFSMSVILLSIVMFCIETLPEFK---EPTYKTWIDSNNRTRKEVKGFTTKRVYEPVFATTEAACIAWFTFEYCIRLIASPRKFQFLYQPLNMIDLVAIIPFYIMLVLK--------QTNTNXXXXXXXXXXXXXXXXXXXKLSRYSKGLKILGYTFRASLQEXXXXXXXXXXXXXXXXSAAYYCEEQVKDTKFRSIIHGFWWAIVTMTTVGYGDMTPETLGGQLVGSFCVLVGVLAIAFPVPVIVNNFTYYYTXLPKSEQ 1627
             RV INISG ++ET   TLA++PETLL  P++ + +FD L  EYFFDRNR +F AIL Y Q+G  L +P N+   IF+ E+RF+  G EA       +  I E E  LP+N+  R++W LFE+P++S  ARI+++ S+ VIL+SIV FC+ETLP F+   E  + + +  +  +   + G+     +   F   E  CI WF+FE+ +R  A P K  F    +N+ID+VAIIP++I L  +        Q      SL+ILRV+RLVRVFRIFKLSR+SKGL+ILG T +AS++ELGLL FFL IG+ILF+SA Y+ E   ++++F SI   FWWA+V+MTTVGYGDM P T+GG++VGS C + GVL IA PVPVIV+NF Y+Y    + E+
Sbjct:   33 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTI-GYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE 425          
The following BLAST results are available for this feature:
BLAST of TCONS_00000556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA29.521e-9148.22Potassium voltage-gated channel subfamily A member... [more]
back to top