Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00000556-protein ID=TCONS_00000556-protein|Name=TCONS_00000556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0006813 potassium ion transport GO:0055085 transmembrane transport GO:0006811 ion transport GO:0051260 protein homooligomerization
Vocabulary: Molecular Function
Term Definition
GO:0005249 voltage-gated potassium channel activity GO:0005515 protein binding GO:0005216 ion channel activity
Vocabulary: Cellular Component
Term Definition
GO:0008076 voltage-gated potassium channel complex GO:0016020 membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006811 ion transport
biological_process
GO:0006813 potassium ion transport
biological_process
GO:0051260 protein homooligomerization
biological_process
GO:0055085 transmembrane transport
cellular_component
GO:0016020 membrane
cellular_component
GO:0008076 voltage-gated potassium channel complex
molecular_function
GO:0005216 ion channel activity
molecular_function
GO:0005515 protein binding
molecular_function
GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 550 Score = Expect = 2.7E-35 / Score = 120.5 Expect = 5.8E-18 / Score = 64.3 Expect = 1.4E-17 / Score = 63.4 Expect = 1.9E-11 / Score = 42.9 Score = Score = 55.15 Score = 40.85 Score = 46.43 Score = 50.02 Score = 65.1 Score = 56.31 Score = 71.94 Score = 61.32 Score = 68.79 Score = 74.17 Score = 61.0 Score = 75.35 Score = 71.18 Score = 43.19 Score = 78.66 Expect = 1.1E-5 / Score = 34.8 Expect = 4.0E-46 / Score = 157.1 Expect = 1.4E-18 / Score = 66.9 Score = Sequence Coil G3DSA:1.20.120.350 G3DSA:1.10.287.70 G3DSA:3.30.710.10 G3DSA:1.20.5.110 SSF81324 PR00169 PR01491 PR01496 SM00225 PF00520 PF02214 SSF54695
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 3..30 None No IPR available GENE3D 1.20.120.350 coord: 287..442 None No IPR available GENE3D 1.10.287.70 coord: 443..494 None No IPR available GENE3D 3.30.710.10 coord: 161..273 None No IPR available GENE3D 1.20.5.110 coord: 496..531 None No IPR available SUPERFAMILY 81324 Voltage-gated potassium channels coord: 285..530 IPR028325 Voltage-gated potassium channel PRINTS PR00169 KCHANNEL coord: 205..224 IPR003968 Potassium channel, voltage dependent, Kv PRINTS PR01491 KVCHANNEL coord: 420..428 IPR003972 Potassium channel, voltage dependent, Kv1 PRINTS PR01496 SHAKERCHANEL coord: 303..314 IPR000210 BTB/POZ domain SMART SM00225 BTB_4 coord: 164..264 IPR005821 Ion transport domain PFAM PF00520 Ion_trans coord: 290..534 IPR003131 Potassium channel tetramerisation-type BTB domain PFAM PF02214 BTB_2 coord: 166..250 IPR011333 SKP1/BTB/POZ domain SUPERFAMILY 54695 POZ domain coord: 164..249
Blast
BLAST of TCONS_00000556-protein vs. Swiss-Prot (Human)
Match:
KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2)
HSP 1 Score: 364.77 bits (935), Expect = 1.290e-120
Identity = 190/394 (48.22%), Postives = 261/394 (66.24%), Query Frame = 0
Query: 164 RRVCINISGKKYETLESTLAKYPETLLALPQREL-FFDSLNGEYFFDRNRKAFGAILTYCQTGV-LVKPANLDDRIFAAELRFF--GFEAESQAHIPQNPINESENLLPQNKILRKLWQLFEFPDTSFVARIVSLFSMSVILLSIVMFCIETLPEFK---EPTYKTWIDSNNRTRKEVKGFTTKRVYEPVFATTEAACIAWFTFEYCIRLIASPRKFQFLYQPLNMIDLVAIIPFYIMLVLK--------QTNTNVSSLSILRVLRLVRVFRIFKLSRYSKGLKILGYTFRASLQELGLLAFFLLIGIILFASAAYYCEEQVKDTKFRSIIHGFWWAIVTMTTVGYGDMTPETLGGQLVGSFCVLVGVLAIAFPVPVIVNNFTYYYTXLPKSEQ 542
RV INISG ++ET TLA++PETLL P++ + +FD L EYFFDRNR +F AIL Y Q+G L +P N+ IF+ E+RF+ G EA + I E E LP+N+ R++W LFE+P++S ARI+++ S+ VIL+SIV FC+ETLP F+ E + + + + + + G+ + F E CI WF+FE+ +R A P K F +N+ID+VAIIP++I L + Q SL+ILRV+RLVRVFRIFKLSR+SKGL+ILG T +AS++ELGLL FFL IG+ILF+SA Y+ E ++++F SI FWWA+V+MTTVGYGDM P T+GG++VGS C + GVL IA PVPVIV+NF Y+Y + E+
Sbjct: 33 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTI-GYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE 425
The following BLAST results are available for this feature:
BLAST of TCONS_00000556-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
F I I V V L R L N K K K K K E R K E K K R E R T I A L K E N M L T V D T F T S S N S P L E Y T N A P L V T T T S N K A K L S H R Q T H T R E S S N Q N R K A S S A R H L A E N L R I R I K P K H G T T N K N Q F C C S T S K N G D G S N E G C C G L L K S T K L G K F C R T V C S C V A Q T M A N Q D E I K I P E P L V T N G Q V D R R R V C I N I S G K K Y E T L E S T L A K Y P E T L L A L P Q R E L F F D S L N G E Y F F D R N R K A F G A I L T Y C Q T G V L V K P A N L D D R I F A A E L R F F G F E A E S Q A H I P Q N P I N E S E N L L P Q N K I L R K L W Q L F E F P D T S F V A R I V S L F S M S V I L L S I V M F C I E T L P E F K E P T Y K T W I D S N N R T R K E V K G F T T K R V Y E P V F A T T E A A C I A W F T F E Y C I R L I A S P R K F Q F L Y Q P L N M I D L V A I I P F Y I M L V L K Q T N T N V S S L S I L R V L R L V R V F R I F K L S R Y S K G L K I L G Y T F R A S L Q E L G L L A F F L L I G I I L F A S A A Y Y C E E Q V K D T K F R S I I H G F W W A I V T M T T V G Y G D M T P E T L G G Q L V G S F C V L V G V L A I A F P V P V I V N N F T Y Y Y T X L P K S E Q I F T K F L K F H L K L G S G 50 100 150 200 250 300 350 400 450 500 550 Expect = 1.29e-120 / Id = 48.22 Sequence KCNA2
Match Name E-value Identity Description
KCNA2 1.290e-120 48.22 Potassium voltage-gated channel subfamily A member... [more]
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