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TCONS_00000542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000542
Unique NameTCONS_00000542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000542 ID=TCONS_00000542|Name=TCONS_00000542|organism=Clytia hemisphaerica|type=transcript|length=1624bp
ACTTCATCAAAGATCCTTACTTTTTTTATTAATCAACTTTCGGCGAATGA
CCTAAGTCCATTTTCAACGGgatatatcaaatttttttaaaagacatCAA
CTGTTTAATTGCATAAAATGTCATTATTATTGATTGAAATAGTAAATATT
GAAATATCATTATCATATTCTAGATTGATTTGTCAATAATATTTTGCACC
TGGACCACTTGTTTCCATCAACCAAATTTCGATGTTTCCAAACATATGGC
TGGGAGATTGGATCCGATTACACCAATCTCGTCCCCAACTCTTTAATACT
TTATTCAGTAGATAATTATGTATTTTCTACAGaggatcattgtaaaaagt
gtTGGTACAAGCTGAGAGTTGTATTGTTATTacctagctggcacacaacg
ttgttttaacgttcaaataacattatttggacgttatgaatgtcacatgg
atgttgttttgacgttgtatGCCGTCTGGGTATAGAGACTGGGTACGAAA
CTGCCAGACACCAATGACTATATATACTACAGTTTTTATGTTACCATTCA
TCAACGATTCAAAAAGACTTTGGGAGTTGACCGATAGAtcgaaagaaaat
gaagacgatTATAGCTCTTTTGGCTTTCACAACTTTTGCTGCCGCTCAGG
TATGCGAAGATAAACAATGGTATTGTCCAATGTATGCACGTATGGGATAT
TGTAAAGCTGAACCGCAACAAATGAAACTTGTGTGTCCAAAAAGCTGTAA
GATGTGTGGAGGTGATGAAAAGCCTGATGGAAGCGGATCCAAACCAGATC
AATGTGGAATGCCAGTAGCTGAATCGCGAATCATTGGTGGTGAAGTTGCT
AAGAAAGACGCATGGCCTTGGCAAATCAGTTTGTATTACAATGGACAGTT
CATGTGTGGTGGTTCTATCCTCTCACCAAGATGGGTTTTGACTGCTGCTC
ACTGTGTTGATGGATTCGATTACCGTGGATACCAAATCGTCTTGGGTGAT
TACAACCGCAAAACAGTTGATGGAGATGAACAAGTCTACAGAGCAGTCCG
TGCCTTCCACCATCCTAACTGGATGCGCCCATCAGAACTTAACAACGACA
TGGCTCTCATCGAACTCGATAAACCTGCCGTTTTCAACGATCACGTCCAA
CCTATCTGTCTTCCAGAAGCTGGTGAAGAATTAGCCGCTGGATCAGAATG
TTACATCACAGGCTGGGGACAACATGATGTCGGACAATCGGGACCACCAG
CTATGGTGTTGAAACAAGCTCTCTTGAAAACTGTCTCACAACAAACATGT
TACAACAAGAACACACGAAATCTTGGAATCCATGTTACTGATCACATGAT
TTGTGCCGGCCGTGGACCACGTGACCCAACATCTGGTTGCCATGGTGATT
CAGGTGGTCCATTTGTTTGCAAAAGTAATGGCCGTTGGGTTTTGTATGGT
TCAGTTTCCTGGGGATCAGGTTATTGCAAATCTTCAGAAGCATACACAGT
TTTTGCTAAGATCAGTTCGCAAGTCAAATGGATCGAATCTTACGCTTATT
AATTAGTTGAATAAGTTGTAAATTTCCCTTAATGgtaaaaaagaaataca
aatgAAGTGAAATTTGCCTACCTG
Run BLAST on NCBI

protein sequence of TCONS_00000542-protein

>TCONS_00000542-protein ID=TCONS_00000542-protein|Name=TCONS_00000542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MKTIIALLAFTTFAAAQVCEDKQWYCPMYARMGYCKAEPQQMKLVCPKSC
KMCGGDEKPDGSGSKPDQCGMPVAESRIIGGEVAKKDAWPWQISLYYNGQ
FMCGGSILSPRWVLTAAHCVDGFDYRGYQIVLGDYNRKTVDGDEQVYRAV
RAFHHPNWMRPSELNNDMALIELDKPAVFNDHVQPICLPEAGEELAAGSE
CYITGWGQHDVGQSGPPAMVLKQALLKTVSQQTCYNKNTRNLGIHVTDHM
ICAGRGPRDPTSGCHGDSGGPFVCKSNGRWVLYGSVSWGSGYCKSSEAYT
VFAKISSQVKWIESYAY
Run BLAST on NCBI

transcript from alignment at sc0000002:465014..469825-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000542 ID=TCONS_00000542|Name=TCONS_00000542|organism=Clytia hemisphaerica|type=transcript|length=4812bp|location=Sequence derived from alignment at sc0000002:465014..469825- (Clytia hemisphaerica)
ACTTCATCAAAGATCCTTACTTTTTTTATTAATCAACTTTCGGCGAATGA CCTAAGTCCATTTTCAACGGGATATATCAAATTTTTTTAAAAGACATCAA CTGTTTAATTGCATAAAATGTCATTATTATTGATTGAAATAGTAAATATT GAAATATCATTATCATATTCTAGATTGATTTGTCAATAATATTTTGCACC TGGACCACTTGTTTCCATCAACCAAATTTCGATGTTTCCAAACATATGGC TGGGAGATTGGATCCGATTACACCAATCTCGTCCCCAACTCTTTAATACT TTATTCAGTAGATAATTATGTATTTTCTACAGAGGATCATTGTAAAAAGT GTTGGTACAAGCTGAGAGTTGTATTGTTATTACCTAGCTGGCACACAACG TTGTTTTAACGTTCAAATAACATTATTTGGACGTTATGAATGTCACATGG ATGTTGTTTTGACGTTGTATGCCGTCTGGGTATAGAGACTGGGTACGAAA CTGCCAGACACCAATGACTATATATACTACAGTTTTTATGTTACCATTCA TCAACGATTCAAAAAGACTTTGGGAGTTGACCGATAGATCGAAAGAAAAT GAAGACGATTATAGCTCTTTTGGCTTTCACAACTTTTGCTGCCGCTCAGG GTAAGAATATAAAACAATTTTTACACTTTTTGTTTGAAAAAGTTAACTGA CATTATGATATTTTGAGCAATTTTCTCACATTCTTCTCATTGGCTTTCAT ATTCAGGGATTCTCGACAATTTGTAAAACTCTTTTAAATAGTTCAATAAG TCAACTGGACTTGTATTTTTAAAAAAGTGCCAAAGTTCACTCCAGTCACC AAAAGGGAAAACATGAGCCAGCCTTAATTGAAATTAATTTCAATTCGTTT TATTTAAAGCGGTTATATTTGGCTTAGAGATACCTTTTATGGTCAAGAGA GACACCTCTAAATCCTTTGACCAAATTTTTGTCTAAAGCTCAGATATTTG ACTTTGAAATCTTTAAAAATGAGTCTTTACACAGCCTTTAGGTTGAATTT CATTGTTTTCAAGTAAAAATTTGAAAATTCAATGTCGAAAATCTCAGCTT TGGAAAAGAATTGGGTCAAAAATTTTGGAGGTGTTTCTTAGAACCATAAA AGATATCTCTAAGCCAGATATAAAAATCATCTGATAATCCCTTTAAGTAC TGTAATAGGGTCCTAACTAAGTTCTGTGGGCTGGGAAAAAATCGGAATAT CGACCAACCACGTGGGTTGTTGCCTAAAAGTCTGAACTTTATTTATCTTT CTATTCTTTTATAGTATGCGAAGATAAACAATGGTATTGTCCAATGTATG CACGTATGGGATATTGTAAAGCTGAACCGCAACAAATGAAACTTGTGTGT CCAAAAAGCTGTAAGATGTGTGGTAAGTCAATCTTCTATAGTCATTGTAT GATTTTTTTGAGATTGCTTAAAAATGGAAGCAATTTGTGGATTTTGTAGA TTTCTTTTTTTGCGCGTGCATGAAATAAATGTCACTCGATCCTTTGTACG CCTTTTTTTTATAAAAACGTCCAAAATTTTTGAAGCCTTCGAATAATTCT TAAATTGTTGAGTTTTCAGCCTGAAAATGTTCTATAAAAATGTTCTTGGT AATGCTCTTCACCTTTTTGTGAGCATTTTTTGTGCAATTTCTTAAGAAAT TGGATGTTTAATAGTCCACGAAGCCTTAAAATGTTTATTAATTTGTTCTT AAAAGATTGAAAAATAGTTTGCATAAAAAAAAGCCTTTTCAATTAGCTTT GAAAAAGATATTTGAAATTTGAAGAATTTTCAAAGAATTCAACCTTTACA GTAACTCAATTAAAAATATTTGCAATATTTGAAATATATCATCGGTCGTG TCTTTCTTTATCAACAGGAGGTGATGAAAAGCCTGATGGAAGCGGATCCA AACCAGATCGTGAGTACTGTAATTTTCTTCAACAAACTTTAGGGTCTCAT TAGGGTCTTTTTTATGTTTTTCACACAAACTTTTGAGACTCAATGTCAAC CCTTCAGGGTCAGACCTTTTGAGCAGCTCTTTTTTTTGTTTGATTGTTTT ATTTTAACAAACAACCCAATCATAATCAAGAACATATAAGTGCAAACACG TATACAGGCACGACGCACTGGCTACGTCACCGAAATTTTCCTCTTGTCGG TAGTCTAGCAAGCTAGACGACTACTTCAGACATAGTAGAAATAAAGCAAA AAGTAAAGGAGGGAACAAATTTTAGTGTTTATATAAACTAAATCCCGTAA CAATAATCGTATCATCATATAACGCCTATACTAGTGTATTACACGCATTA TAAACGACTCCAGTCTACCTTGTCGGCAAAATCGCTTAAATTTCCTCATT CACCGTATCAGATTTAAAAAGCTTCCTTTGTGCCTGGCATGAATTGGTGC GAATTGACCTTGATAGCAAACTACTAAACTGAGAACTGAAGTGAGACTCA AGCTCATGACTTCCGCATTACTTGTGCAACTGCTCTACCGACTGAGCTAT CCAGTCCACACTGGGAATACATACAGGAACAGCCTCGACTTTGATTCGAC TTTCTTTTTTCTCAGAATGTGGAATGCCAGTAGCTGAATCGCGAATCATT GGTGGTGAAGTTGCTAAGAAAGACGCATGGCCTTGGCAAATCAGTTTGTA TTACAATGGACAGTTCATGTGTGGTGGTTCTATCCTCTCACCAAGGTACG TGATCATACGAAGTTGTTTTAACGTCCATATAACGTTATATGAACGTCGA AACAACAAATATATTTGAGAAAACACTGGAAGTTGCCTCAGAAATTGAGA AATAAGATCCTCCCTTACCTTATTTTGTAATGTTGATTCAAGACAGCCTT TTTCAACATTGCAAATGAGGGAGGATACTTGAAACTTGCTTTTTTTTCTC ATAATTTATGTTCATGATTGAAGCAAGATTGTTACAAATGAAAATGTGAA AAACTGCAAAAACAAGGATGATTTATACACCCCCTTCTCACAGACACACT GGGAACCCTTCCCACTAGGTAAAATTGGTCAAAATATCATCCCCGGTGAA AAATTAGCCGCCAATTTTTGTCCCTACTGAAAATAATCTAATAGACCAAT CCTCACTGCTATTTATTATGCTATTTTTTCCATCCAAACTAAATTTTCTG ACTTTAAAACAAAAGAATTCAAATCCCCATACATAAAAACATGGGAATAT AAATCCCCATCGAGTTTCAGTCCGTTAATTTCATCCCCACCGGCTGAAAA AGTCCTACCGGGTCTGTGAGAAGGAGTGTATTAATGTCTACTATTTTCTT GAATTTCTTCATCGGGCACTTTTGGCAAAGAAAAGAATTAGAATTGTAAT TCTACAAATTTAAGAAAATTCTCCGGTAAAAATTAAGAAAAATTTCCTCT ATTTATTCTAGATGGGTTTTGACTGCTGCTCACTGTGTTGATGGATTCGA TTACCGTGGATACCAAATCGTCTTGGGTAAGACCTATCATTAGATATCTT TATTAACTTACCCTTCTTCAATGATTTCGAACCTTTTTATCCTTTCGAAA GTTATTTTGAACCAACAATTTTAATATCATAAAGTAATTCAGTGAGAAAT TTTGCTTCAGACGGATGTTTTCAAATTTCATTTGTAACCAATACTGCAAT CTCGCTCAAATTATTGCAAATTTTGGGTAATTCCTCGTTTTTAAACAATT CAAAGTTCGGGCGAGAAAGTCGTTTTTGGGCTAATTGATAAATTTATTCG AATATTCCAATTCGGGAGAAGTTTATAGACTTCCAGGCTATATTCTGAGC CCTATTTGCCCATTCTTGGATTTTTTTATCCTCAGTTAGCTAGTCTTAAG TCTAGCGTTAAAATTCAGTGTTAAAACTCTACCCTTCCAACCTAATTTAG AGCGCTTCCAAATCGTTTGTGTTTGTAAGATTTCGTGGGAATTTCCGTTT TTTCTCAAATATTATGACTGATTTTGGATTTAACTATCTCTACCATTTTC TATTTGTACCTCCCCAAAGGAAAAAAACATTCTCATAACTTGACCTTGTT GTCAACATTTTGCGATTAGTTATTATTTTCAAAATTCTGCAAATCCGTAC TCAATTTCTTATCATCCTTACTTTTTCTTTCAGGTGATTACAACCGCAAA ACAGTTGATGGAGATGAACAAGTCTACAGAGCAGTCCGTGCCTTCCACCA TCCTAACTGGATGCGCCCATCAGAACTTAACAACGACATGGCTCTCATCG AACTCGATAAACCTGCCGTTTTCAACGATCACGTCCAACCTATCTGTCTT CCAGAAGCTGGTGAAGAATTAGCCGCTGGATCAGAATGTTACATCACAGG CTGGGGACAACATGATGTCGGACAATCGGGACCACCAGCTATGGTGTTGA AACAAGCTCTCTTGAAAACTGTCTCACAACAAACATGTTACAACAAGAAC ACACGAAATCTTGGAATCCATGTTACTGATCACATGATTTGTGCCGGCCG TGGACCACGTGACCCAACATCTGGTTGCCATGGTGATTCAGGTGGTCCAT TTGTTTGCAAAAGTAATGGCCGTTGGGTTTTGTATGGTTCAGTTTCCTGG GGATCAGGTTATTGCAAATCTTCAGAAGCATACACAGTTTTTGCTAAGAT CAGTTCGCAAGTCAAATGGATCGAATCTTACGCTTATTAATTAGTTGAAT AAGTTGTAAATTTCCCTTAATGGTAAAAAAGAAATACAAATGAAGTGAAA TTTGCCTACCTG

Coding sequence (CDS) from alignment at sc0000002:465014..469825-

>TCONS_00000542 ID=TCONS_00000542|Name=TCONS_00000542|organism=Clytia hemisphaerica|type=CDS|length=5724bp|location=Sequence derived from alignment at sc0000002:465014..469825- (Clytia hemisphaerica)
GTGATTACAACCGCAAAACAGTTGATGGAGATGAACAAGTCTACAGAGCA
GTCCGTGCCTTCCACCATCCTAACTGGATGCGCCCATCAGAACTTAACAA
CGACATGGCTCTCATCGAACTCGATAAACCTGCCGTTTTCAACGATCACG
TCCAACCTATCTGTCTTCCAGAAGCTGGTGAAGAATTAGCCGCTGGATCA
GAATGTTACATCACAGGCTGGGGACAACATGATGTCGGACAATCGGGACC
ACCAGCTATGGTGTTGAAACAAGCTCTCTTGAAAACTGTCTCACAACAAA
CATGTTACAACAAGAACACACGAAATCTTGGAATCCATGTTACTGATCAC
ATGATTTGTGCCGGCCGTGGACCACGTGACCCAACATCTGGTTGCCATGG
TGATTCAGGTGGTCCATTTGTTTGCAAAAGTAATGGCCGTTGGGTTTTGT
ATGGTTCAGTTTCCTGGGGATCAGGTTATTGCAAATCTTCAGAAGCATAC
ACAGTTTTTGCTAAGATCAGTTCGCAAGTCAAATGGATCGAATCTTACGC
TTATTAAATGGGTTTTGACTGCTGCTCACTGTGTTGATGGATTCGATTAC
CGTGGATACCAAATCGTCTTGGAATGTGGAATGCCAGTAGCTGAATCGCG
AATCATTGGTGGTGAAGTTGCTAAGAAAGACGCATGGCCTTGGCAAATCA
GTTTGTATTACAATGGACAGTTCATGTGTGGTGGTTCTATCCTCTCACCA
AGGAGGTGATGAAAAGCCTGATGGAAGCGGATCCAAACCAGATCTATGCG
AAGATAAACAATGGTATTGTCCAATGTATGCACGTATGGGATATTGTAAA
GCTGAACCGCAACAAATGAAACTTGTGTGTCCAAAAAGCTGTAAGATGTG
TGATGAAGACGATTATAGCTCTTTTGGCTTTCACAACTTTTGCTGCCGCT
CAGGGTGATTACAACCGCAAAACAGTTGATGGAGATGAACAAGTCTACAG
AGCAGTCCGTGCCTTCCACCATCCTAACTGGATGCGCCCATCAGAACTTA
ACAACGACATGGCTCTCATCGAACTCGATAAACCTGCCGTTTTCAACGAT
CACGTCCAACCTATCTGTCTTCCAGAAGCTGGTGAAGAATTAGCCGCTGG
ATCAGAATGTTACATCACAGGCTGGGGACAACATGATGTCGGACAATCGG
GACCACCAGCTATGGTGTTGAAACAAGCTCTCTTGAAAACTGTCTCACAA
CAAACATGTTACAACAAGAACACACGAAATCTTGGAATCCATGTTACTGA
TCACATGATTTGTGCCGGCCGTGGACCACGTGACCCAACATCTGGTTGCC
ATGGTGATTCAGGTGGTCCATTTGTTTGCAAAAGTAATGGCCGTTGGGTT
TTGTATGGTTCAGTTTCCTGGGGATCAGGTTATTGCAAATCTTCAGAAGC
ATACACAGTTTTTGCTAAGATCAGTTCGCAAGTCAAATGGATCGAATCTT
ACGCTTATTAAATGGGTTTTGACTGCTGCTCACTGTGTTGATGGATTCGA
TTACCGTGGATACCAAATCGTCTTGGAATGTGGAATGCCAGTAGCTGAAT
CGCGAATCATTGGTGGTGAAGTTGCTAAGAAAGACGCATGGCCTTGGCAA
ATCAGTTTGTATTACAATGGACAGTTCATGTGTGGTGGTTCTATCCTCTC
ACCAAGGAGGTGATGAAAAGCCTGATGGAAGCGGATCCAAACCAGATCTA
TGCGAAGATAAACAATGGTATTGTCCAATGTATGCACGTATGGGATATTG
TAAAGCTGAACCGCAACAAATGAAACTTGTGTGTCCAAAAAGCTGTAAGA
TGTGTGATGAAGACGATTATAGCTCTTTTGGCTTTCACAACTTTTGCTGC
CGCTCAGGGTGATTACAACCGCAAAACAGTTGATGGAGATGAACAAGTCT
ACAGAGCAGTCCGTGCCTTCCACCATCCTAACTGGATGCGCCCATCAGAA
CTTAACAACGACATGGCTCTCATCGAACTCGATAAACCTGCCGTTTTCAA
CGATCACGTCCAACCTATCTGTCTTCCAGAAGCTGGTGAAGAATTAGCCG
CTGGATCAGAATGTTACATCACAGGCTGGGGACAACATGATGTCGGACAA
TCGGGACCACCAGCTATGGTGTTGAAACAAGCTCTCTTGAAAACTGTCTC
ACAACAAACATGTTACAACAAGAACACACGAAATCTTGGAATCCATGTTA
CTGATCACATGATTTGTGCCGGCCGTGGACCACGTGACCCAACATCTGGT
TGCCATGGTGATTCAGGTGGTCCATTTGTTTGCAAAAGTAATGGCCGTTG
GGTTTTGTATGGTTCAGTTTCCTGGGGATCAGGTTATTGCAAATCTTCAG
AAGCATACACAGTTTTTGCTAAGATCAGTTCGCAAGTCAAATGGATCGAA
TCTTACGCTTATTAAATGGGTTTTGACTGCTGCTCACTGTGTTGATGGAT
TCGATTACCGTGGATACCAAATCGTCTTGGAATGTGGAATGCCAGTAGCT
GAATCGCGAATCATTGGTGGTGAAGTTGCTAAGAAAGACGCATGGCCTTG
GCAAATCAGTTTGTATTACAATGGACAGTTCATGTGTGGTGGTTCTATCC
TCTCACCAAGGAGGTGATGAAAAGCCTGATGGAAGCGGATCCAAACCAGA
TCTATGCGAAGATAAACAATGGTATTGTCCAATGTATGCACGTATGGGAT
ATTGTAAAGCTGAACCGCAACAAATGAAACTTGTGTGTCCAAAAAGCTGT
AAGATGTGTGATGAAGACGATTATAGCTCTTTTGGCTTTCACAACTTTTG
CTGCCGCTCAGGGTGATTACAACCGCAAAACAGTTGATGGAGATGAACAA
GTCTACAGAGCAGTCCGTGCCTTCCACCATCCTAACTGGATGCGCCCATC
AGAACTTAACAACGACATGGCTCTCATCGAACTCGATAAACCTGCCGTTT
TCAACGATCACGTCCAACCTATCTGTCTTCCAGAAGCTGGTGAAGAATTA
GCCGCTGGATCAGAATGTTACATCACAGGCTGGGGACAACATGATGTCGG
ACAATCGGGACCACCAGCTATGGTGTTGAAACAAGCTCTCTTGAAAACTG
TCTCACAACAAACATGTTACAACAAGAACACACGAAATCTTGGAATCCAT
GTTACTGATCACATGATTTGTGCCGGCCGTGGACCACGTGACCCAACATC
TGGTTGCCATGGTGATTCAGGTGGTCCATTTGTTTGCAAAAGTAATGGCC
GTTGGGTTTTGTATGGTTCAGTTTCCTGGGGATCAGGTTATTGCAAATCT
TCAGAAGCATACACAGTTTTTGCTAAGATCAGTTCGCAAGTCAAATGGAT
CGAATCTTACGCTTATTAAATGGGTTTTGACTGCTGCTCACTGTGTTGAT
GGATTCGATTACCGTGGATACCAAATCGTCTTGGAATGTGGAATGCCAGT
AGCTGAATCGCGAATCATTGGTGGTGAAGTTGCTAAGAAAGACGCATGGC
CTTGGCAAATCAGTTTGTATTACAATGGACAGTTCATGTGTGGTGGTTCT
ATCCTCTCACCAAGGAGGTGATGAAAAGCCTGATGGAAGCGGATCCAAAC
CAGATCTATGCGAAGATAAACAATGGTATTGTCCAATGTATGCACGTATG
GGATATTGTAAAGCTGAACCGCAACAAATGAAACTTGTGTGTCCAAAAAG
CTGTAAGATGTGTGATGAAGACGATTATAGCTCTTTTGGCTTTCACAACT
TTTGCTGCCGCTCAGGGTGATTACAACCGCAAAACAGTTGATGGAGATGA
ACAAGTCTACAGAGCAGTCCGTGCCTTCCACCATCCTAACTGGATGCGCC
CATCAGAACTTAACAACGACATGGCTCTCATCGAACTCGATAAACCTGCC
GTTTTCAACGATCACGTCCAACCTATCTGTCTTCCAGAAGCTGGTGAAGA
ATTAGCCGCTGGATCAGAATGTTACATCACAGGCTGGGGACAACATGATG
TCGGACAATCGGGACCACCAGCTATGGTGTTGAAACAAGCTCTCTTGAAA
ACTGTCTCACAACAAACATGTTACAACAAGAACACACGAAATCTTGGAAT
CCATGTTACTGATCACATGATTTGTGCCGGCCGTGGACCACGTGACCCAA
CATCTGGTTGCCATGGTGATTCAGGTGGTCCATTTGTTTGCAAAAGTAAT
GGCCGTTGGGTTTTGTATGGTTCAGTTTCCTGGGGATCAGGTTATTGCAA
ATCTTCAGAAGCATACACAGTTTTTGCTAAGATCAGTTCGCAAGTCAAAT
GGATCGAATCTTACGCTTATTAAATGGGTTTTGACTGCTGCTCACTGTGT
TGATGGATTCGATTACCGTGGATACCAAATCGTCTTGGAATGTGGAATGC
CAGTAGCTGAATCGCGAATCATTGGTGGTGAAGTTGCTAAGAAAGACGCA
TGGCCTTGGCAAATCAGTTTGTATTACAATGGACAGTTCATGTGTGGTGG
TTCTATCCTCTCACCAAGGAGGTGATGAAAAGCCTGATGGAAGCGGATCC
AAACCAGATCTATGCGAAGATAAACAATGGTATTGTCCAATGTATGCACG
TATGGGATATTGTAAAGCTGAACCGCAACAAATGAAACTTGTGTGTCCAA
AAAGCTGTAAGATGTGTGATGAAGACGATTATAGCTCTTTTGGCTTTCAC
AACTTTTGCTGCCGCTCAGGGTGATTACAACCGCAAAACAGTTGATGGAG
ATGAACAAGTCTACAGAGCAGTCCGTGCCTTCCACCATCCTAACTGGATG
CGCCCATCAGAACTTAACAACGACATGGCTCTCATCGAACTCGATAAACC
TGCCGTTTTCAACGATCACGTCCAACCTATCTGTCTTCCAGAAGCTGGTG
AAGAATTAGCCGCTGGATCAGAATGTTACATCACAGGCTGGGGACAACAT
GATGTCGGACAATCGGGACCACCAGCTATGGTGTTGAAACAAGCTCTCTT
GAAAACTGTCTCACAACAAACATGTTACAACAAGAACACACGAAATCTTG
GAATCCATGTTACTGATCACATGATTTGTGCCGGCCGTGGACCACGTGAC
CCAACATCTGGTTGCCATGGTGATTCAGGTGGTCCATTTGTTTGCAAAAG
TAATGGCCGTTGGGTTTTGTATGGTTCAGTTTCCTGGGGATCAGGTTATT
GCAAATCTTCAGAAGCATACACAGTTTTTGCTAAGATCAGTTCGCAAGTC
AAATGGATCGAATCTTACGCTTATTAAATGGGTTTTGACTGCTGCTCACT
GTGTTGATGGATTCGATTACCGTGGATACCAAATCGTCTTGGAATGTGGA
ATGCCAGTAGCTGAATCGCGAATCATTGGTGGTGAAGTTGCTAAGAAAGA
CGCATGGCCTTGGCAAATCAGTTTGTATTACAATGGACAGTTCATGTGTG
GTGGTTCTATCCTCTCACCAAGGAGGTGATGAAAAGCCTGATGGAAGCGG
ATCCAAACCAGATCTATGCGAAGATAAACAATGGTATTGTCCAATGTATG
CACGTATGGGATATTGTAAAGCTGAACCGCAACAAATGAAACTTGTGTGT
CCAAAAAGCTGTAAGATGTGTGATGAAGACGATTATAGCTCTTTTGGCTT
TCACAACTTTTGCTGCCGCTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000327XLOC_000327Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000542-proteinTCONS_00000542-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000542-exon-sc0000002-1575043694:469176..469825TCONS_00000542-exon-sc0000002-1575043694:469176..469825Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1575043694:468404..468511TCONS_00000542-exon-sc0000002-1575043694:468404..468511Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1575043694:467867..467908TCONS_00000542-exon-sc0000002-1575043694:467867..467908Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1575043694:467081..467210TCONS_00000542-exon-sc0000002-1575043694:467081..467210Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1575043694:466300..466364TCONS_00000542-exon-sc0000002-1575043694:466300..466364Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1575043694:465014..465642TCONS_00000542-exon-sc0000002-1575043694:465014..465642Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1510915933:469176..469825TCONS_00000542-exon-sc0000002-1510915933:469176..469825Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1510915933:468404..468511TCONS_00000542-exon-sc0000002-1510915933:468404..468511Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1510915933:467867..467908TCONS_00000542-exon-sc0000002-1510915933:467867..467908Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1510915933:467081..467210TCONS_00000542-exon-sc0000002-1510915933:467081..467210Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1510915933:466300..466364TCONS_00000542-exon-sc0000002-1510915933:466300..466364Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1510915933:465014..465642TCONS_00000542-exon-sc0000002-1510915933:465014..465642Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1491911889:469176..469825TCONS_00000542-exon-sc0000002-1491911889:469176..469825Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1491911889:468404..468511TCONS_00000542-exon-sc0000002-1491911889:468404..468511Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1491911889:467867..467908TCONS_00000542-exon-sc0000002-1491911889:467867..467908Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1491911889:467081..467210TCONS_00000542-exon-sc0000002-1491911889:467081..467210Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1491911889:466300..466364TCONS_00000542-exon-sc0000002-1491911889:466300..466364Clytia hemisphaericaexon
TCONS_00000542-exon-sc0000002-1491911889:465014..465642TCONS_00000542-exon-sc0000002-1491911889:465014..465642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:465014..469825 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.401162 0.220048 0.314223 0.445539 0.643589 0.56109 0.676931 1.05622 2.00718 1.62258 2.38778 3.38974 1.23399 1.0218 1.78111 4.20546 23.6591 53.2325 1.27933 1.70245 509.689 499.466 419.142 656.598 1019.43 910.591 1.58146 1.10791 1.84156 1.3621
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR003582ShKT_dom
IPR018114TRYPSIN_HIS
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
BLAST of TCONS_00000542 vs. Swiss-Prot (Human)
Match: TRYG1 (Tryptase gamma OS=Homo sapiens GN=TPSG1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 1.364e-45
Identity = 95/251 (37.85%), Postives = 129/251 (51.39%), Query Frame = 2
Query:  803 CGMPV---AESRIIGGEVAKKDAWPWQISLYYNGQFMCGGSILSPRWVLTAAHCVDG-FDYRGYQIVLGDYNRKTVDGDEQVYRAVRAFHHPNWMRPSELNNDMALIELDKPAVFNDHVQPICLPEAGEELAAGSECYITGWGQHDVGQSGPPAMVLKQALLKTVSQQTCYNKNTRNLGIHVTDHMICAGRGPRDPTSGCHGDSGGPFVCKSNGRWVLYGSVSWGSGYCKSSEAYTVFAKISSQVKWIESY 1543
            CG P    A  RI+GG  A   AWPWQ SL      +CGGS+LSP+WVLTAAHC  G  +   YQ+ LG+    T+       R +     P+       + D+AL+EL  P   +  + P+CLPEA ++   G  C++TGWG    G+  PP   L++  +  V  +TC        G  +   M+CA RGP D    C  DSGGP VC+ NG WV  G+VSWG G C       V+ ++ + V WI  +
Sbjct:   26 CGRPQVSDAGGRIVGGHAAPAGAWPWQASLRLRRMHVCGGSLLSPQWVLTAAHCFSGSLNSSDYQVHLGELE-ITLSPHFSTVRQIILHSSPSGQ--PGTSGDIALVELSVPVTLSSRILPVCLPEASDDFCPGIRCWVTGWGYTREGEPLPPPYSLREVKVSVVDTETCRRDYPGPGGSILQPDMLCA-RGPGD---ACQDDSGGPLVCQVNGAWVQAGTVSWGEG-CGRPNRPGVYTRVPAYVNWIRRH 268          
The following BLAST results are available for this feature:
BLAST of TCONS_00000542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRYG11.364e-4537.85Tryptase gamma OS=Homo sapiens GN=TPSG1 PE=2 SV=3[more]
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