|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000536 ID=TCONS_00000536|Name=TCONS_00000536|organism=Clytia hemisphaerica|type=transcript|length=7172bpRun BLAST on NCBI transcript from alignment at sc0000002:418855..442205- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000536 ID=TCONS_00000536|Name=TCONS_00000536|organism=Clytia hemisphaerica|type=transcript|length=23351bp|location=Sequence derived from alignment at sc0000002:418855..442205- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000536 vs. Swiss-Prot (Human)
Match: PSME4 (Proteasome activator complex subunit 4 OS=Homo sapiens GN=PSME4 PE=1 SV=2) HSP 1 Score: 724.931 bits (1870), Expect = 0.000e+0 Identity = 433/1028 (42.12%), Postives = 631/1028 (61.38%), Query Frame = 1
Query: 106 PQKLIVYNKHLPYSIKKEAER--QLSEIKYNLSRAVILQEINPGLSIWFDRFIIYLRLHGRNFTKEDHVLFINLFLNLMEMPEMGPSGIKGIAMXXXXXXXXXXXXTRNDLTISWRPLYELVKSIKYSKLTPVGLERFPSKYVETILSVIKYARSYFPVEATQEMLLEFRPLLCPTDATKTNAALYLSLFLPTKIERGTESKTYLLWLDELMEYWFHCTT-SNVASVYLRLFSRLAEDNAGYLDWSKYINRIFNFFFCKLSLPINGMRRGFDLKGTMSNSADFAK---WFVYMMGGEQGTVIFDKLEKLFVTLKSFYHPSNYDKHSSVLLGFLNALTSAFVMRLNHERYRKPSWTVDIPEKSKITDAEIERYVNIVKEVALLSVYSKQGSXXXXXXXXXXXXXXXXXVIPQLLQSTFEALETLVEPHQVTATLMCITSVARPLASGGGCFPSAXXXXXXXXXXXXXXXXXNDFRKSMCAFNFISAIVSLIPLVNCMPAVHAGIEMSEVEKELCLASEQFEDLILQFFDRCFVLVENSTTENITQQDSTLDSTASAQDSMLGRSLVSTVQVVFMQCSKALFEVALDALFRFVSSRVLEVDVAGKLVSDMCRGAVRARPKETLKKMLPYITNRVINLATVEGVQNEEHVDPELLWYLEMLSELGRCNGMELLQYKEVLKEVIKLTIHMKCKKAYSRAAQLLKSILCSVSEVYITEWMSVHYGFDLPPMEHFYIRDWGKPYPLDELNPKWHSPSQEEMQFADELLKEFLVPELELLKEIINGRV-LTRDEIHQHLQIIATCLYGAANLLPNWTDKRVEGVALPTLVSRECILNTVNLSDVEKFVCCINRKDVVYQ-MHNFFNFMSKTHEDDTKSFRMLARIYDILVLHNGVHWSDFNLRWKSASAVKKALADRLHGNKMHVRAVQIERVQLQHDMRVLDQHAAAFSVTDKVVIDDLLFMSTSEYAEVRIHSQKILFGCLEAFDVATRYVLPKMLENIHPKAQ-VSHEKLKGTLYIL--QYSRIVYMLIHDW 3156
PQK IVYNK LPY+ + +AE QL++IK NL RAV LQE+ PG W + Y+RL+GR F+KEDHVLFI L L+ +P++ S ++G A LL LLKK+ELL+R DL + WRPLY++V+ I YSK +GL FP+ + +++K R YFP +AT EML E+RPL+CP D T A Y +FLPT + K + LW DEL+ W + LF+RLA DN GY+DW Y+ +IF L+LP+ + + ++N+ D W MMGG ++ L LF ++ SFYHPSN + + L+ L L ++ V RL+ ERY+KPSW +P+ K+TD ++ +V + + LL+++SK GSL+AA LQNLAL+R +LVIP +L+ T+ ALETL EPHQ+TATL C+ VAR L SGG FP PT++LPLL LPG+DPNDF K M F FI+ +L+PLV+C + +++EVE+ELC A+ +FED +LQF DRCF L+E+ST E ++ T + +S++ L ST + QCSK +F VAL +F F +S + E VAG++V+DMCR AV+ P+E+LK +P+ + + L + V N+E +D ELLW L++LSE+ R +G +LL Y+E L ++++ T+H+ CK+ Y+ + LL +L S + +Y TE+ SV GFD PP E+F I+DWGKP L L +WH PS EE+ FA LL FL PEL L+ +G++ ++RD+I Q L I+ CL G+ NLLP + V + +P++VS E T + +E + N ++V+ + N + EDDTKS ++ +I L+ G H +F+ RWKS + VKK++ +RLHG K H+RA+ I+RV LQH++R L + + +I DLL +STS Y++VR +Q+ F L A++ R ++P +LE + P Q V+ ++ KG LY L +S + +HDW
Sbjct: 28 PQKEIVYNKLLPYAERLDAESDLQLAQIKCNLGRAVQLQELWPGGLFWTRKLSTYIRLYGRKFSKEDHVLFIKLLYELVSIPKLEISMMQGFARLLINLLKKKELLSRADLELPWRPLYDMVERILYSKTEHLGLNWFPNSVENILKTLVKSCRPYFPADATAEMLEEWRPLMCPFDVTMQKAITYFEIFLPTSLPPELHHKGFKLWFDELIGLWVSVQNLPQWEGQLVNLFARLATDNIGYIDWDPYVPKIFTRILRSLNLPVGSSQ--VLVPRFLTNAYDIGHAVIWITAMMGGP-SKLVQKHLAGLFNSITSFYHPSNNGRWLNKLMKLLQRLPNSVVRRLHRERYKKPSWLTPVPDSHKLTDQDVTDFVQCIIQPVLLAMFSKTGSLEAAQALQNLALMRPELVIPPVLERTYPALETLTEPHQLTATLSCVIGVARSLVSGGRWFPEGPTHMLPLLMRALPGVDPNDFSKCMITFQFIATFSTLVPLVDCSSVLQERNDLTEVERELCSATAEFEDFVLQFMDRCFGLIESSTLEQTREETET--EKMTHLESLVELGLSSTFSTILTQCSKEIFMVALQKVFNFSTSHIFETRVAGRMVADMCRAAVKCCPEESLKLFVPHCCSVITQLTMNDDVLNDEELDKELLWNLQLLSEITRVDGRKLLLYREQLVKILQRTLHLTCKQGYTLSCNLLHHLLRSTTLIYPTEYCSVPGGFDKPPSEYFPIKDWGKPGDLWNLGIQWHVPSSEEVSFAFYLLDSFLQPELVKLQHCGDGKLEMSRDDILQSLTIVHNCLIGSGNLLPPLKGEPVTNL-VPSMVSLE---ETKLYTGLEYDLSRENHREVIATVIRKLLNHILDNSEDDTKSLFLIIKIIGDLLQFQGSHKHEFDSRWKSFNLVKKSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEGCEYKKIHQDMIRDLLRLSTSSYSQVRNKAQQTFFAALGAYNFCCRDIIPLVLEFLRPDRQGVTQQQFKGALYCLLGNHSGVCLANLHDW 1046 HSP 2 Score: 461.07 bits (1185), Expect = 4.424e-132 Identity = 290/854 (33.96%), Postives = 467/854 (54.68%), Query Frame = 2
Query: 3179 YSRIVYMLIHDWKLMASSWIPIV-----QANQSEKPSIVKLLNYLIRKIQSKFETMKIERKIGESASKVAKQLLETKSPEARTSLSDSPADDSVYPSDKFMKMGQDKCTKKNEENLANYRRLEQDLSKLLQDTSIHWRCSEMCTKLMNLLLNNEVKSCHEVINTFLNLLVNDSHL-LRQVKIYXNTFLNLLVNDSHLLRQYAIRGIMAVLYQYKPQFAKRKLNYPEHNIDASPDVLMKLMPGDNRTDNQWLQYNDTNPINSQEDLERFSFIDKTHWGYQTWPLELDILSNQADFYTKIRNKDCLCKEENLIVDTLNNSEYLEKFIKFHSMEVKKGEDRFQHIHYTLFKGLFRNYGPSMFELFRPVVNDLLAGNNESKHRLAIEIIAGMIRGSKHWNYESLTMFWDFMVPLLQNVFVSNVMEETVKDWILALVVSTESHDPNRFHRLFTMLLNNPINGDGGSQGDTNRLFIIRKTLGQQEWRLANVNHNMMKYLLPHLTHPFQNVREKVGSLVSYILLFDLKYASHTPTLSPRCEMFVDYVYEDILKLYQITLGEIEAHEHQNEAMEIDGVGVTEETKKLERMAKTVLSFLVNKSA-NFQPVNKALYRIIPLLLVLESREDD---PELVGLCKYTFPALASKQLPDDLAQPAIQSIIQVCYNKKSWNLRRTGLNYLMMMVFHNLYI-LDDEATRNQLQEMLIERLKDEQVEVREIASKLLSGLVHFGYFSITEELLSTFHTMAKIKMKKKRHGIELTQAQTDKNVLALQVKHXXXXXXXXXXXXFPYDVCTWIPEVVIDLGNYLHEVPQISATAKKTLSEFRRTHHDNWHIHQQQFTDDQLSALTDLLISPSYYA 5707
+S + +HDW + +W IV QA EKPSIV+L + L KI ++ET+ ++ I +S ++A+ L ++K+P + + S + +K G + +KN + L NY L L ++ ++ W+ H I LL +D L LR ++ F+ L +D+ ++R+ AI + +L Q K K +N E I P +++ GD R DN WL Y+ ++++ E F++KTHWGY TWP + + + + R+++ + + E +I D ++ +++E+ I F S+E +KG+D+F + LFKG+FRN+ + + +P + L+A ++ES R EIIAG+IRGSKHW +E + W+ + PLL+ +SN+ ET DW + S ES DP + H LF +LL +P++G+GGS D RL++++ L QQEWR+ + H ++KYL P LT ++NVRE++GS+++YI + D+ + TPT+SP F + E + L + E QN ME +G+G +E + ++ KT+L +L+ + +F +++PL + E+D EL K +L S+ L P + +++ SW+ R T L YL MVF+NL+I L++E ++ ++I L+DEQ+EVRE+A+ LSGL+ + ++ + F + K K+ KKR + T + L +H GVLGL A VL+ PYDV TW+P+++++L +L++ I T KKTLS FRRTHHDNW H+QQFTDDQL LTDLL+SP YYA
Sbjct: 1035 HSGVCLANLHDWDCIVQTWPAIVSSGLSQAMSLEKPSIVRLFDDLAEKIHRQYETIGLDFTIPKSCVEIAELLQQSKNPSI----------NQILLSPEKIKEGIKRQQEKNADALRNYENLVDTLLDGVEQRNLPWKFE------------------HIGIGLLSLLLRDDRVLPLRAIRF----FVENLNHDAIVVRKMAISAVAGILKQLKRTHKKLTINPCE--ISGCPKP-TQIIAGD-RPDNHWLHYDSKTIPRTKKEWESSCFVEKTHWGYYTWPKNMVVYAGVEEQPKLGRSREDMTEAEQIIFDHFSDPKFVEQLITFLSLEDRKGKDKFNPRRFCLFKGIFRNFDDAFLPVLKPHLEHLVADSHESTQRCVAEIIAGLIRGSKHWTFEKVEKLWELLCPLLRTA-LSNITVETYNDWGACIATSCESRDPRKLHWLFELLLESPLSGEGGSFVDACRLYVLQGGLAQQEWRVPELLHRLLKYLEPKLTQVYKNVRERIGSVLTYIFMIDVSLPNTTPTISPHVPEFTARILEKLKPLMDVD------EEIQNHVMEENGIGEEDERTQGIKLLKTILKWLMASAGRSFSTAVTEQLQLLPLFFKIAPVENDNSYDELKRDAKLCL-SLMSQGLLYPHQVPLVLQVLKQTARSSSWHARYTVLTYLQTMVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQIHFEQLCKTKLPKKRKRDPGSVGDTIPSA-ELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 1843 The following BLAST results are available for this feature:
BLAST of TCONS_00000536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.