|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000528 ID=TCONS_00000528|Name=TCONS_00000528|organism=Clytia hemisphaerica|type=transcript|length=1365bp AGATGTGAAATGTATTGATCAAGAATATTGAAATCAATCATATTTTCAGT CATCATTGCGTTGTGAttgatcgaaacggtttcgtgGTTTATCAATCGAG TTTTATGGAAAAGAATAAAAATCCAACTCTCGAAAATCAACACATCGTAA AGATGCATGGCGTGGTTGCGAAGAGTATGATAGAAGAGGGAGTGATGATA AAGAATTATTGTTTGGAAATCAGAAATAATATAACCATCAAGGAATGGTT TTATTCCCTTGACCACGTGACAGAATCAAAGAAATATCAATCGAGTCGAA GTAGTTTGGATTATCGAGTTGTACCTATAATTGGCTCCAATCTATTATTG CTATATATTAACGGTATTAACGATTGTAGTGGTCTAGAAAGCTGCAATTG TCAAGACCCTACTGATGGAgAAATATTTGGGTATTGTTCGAACGATATCA GCGAAACAAATTGTGAATGTCCTTGTATACAACCCGTTACTTGTTTGAAT GAGCTAGATGATACGACCAAACTTCAATGTTATCCAGAAGACAAACGTAA AACGGACTTTTCAGGGAGATGGTATAAAGGAGATCTTTCTTCTTTACCAC TCTGTTTTGATCCAGAATGTAAAACACGGAAAAGTTCTGGTCAGTGTAAT CGTTTCAAATCTGGTTGCAATTGGTGTCATAAATATCCAAACGGAACATC CGCGATTGACGATCACAAATATTGTGAATACTCCGACAAAACATGTTTCC CAGATTTAATTCCTTTACGACGAAAGAAACACCATACTGGCAATAACCCA CTTACATTGGAATATATCATCATAATATCAGTTCTCAGTTTTATATTATT CATATGTTCGATATTGGTTGGCATTTACTTTTGTcgaaaacgaaaaaata acCGCAGAAGACAATCGCCTACTTCATCAACCGAAAGTCAAGATtaccaa aatccaaatttctaTAATGATGAGGATCCTGATTACTTTACGCCCTCAGG ACCACCCCAACGCCCACCAGAAACCCCCGAATTACCTACGGTGGAAGTAG GAGCGGCTCGTGATGTAGTCTTTCATATGCGAGTTGACGATGCACAGTCA CCAGCGTCAAGTAACGGAAATTTTTTCCCAGATTTTAATAGAAAGTATCA AGGTAACGTGGAGATCATTGAAGTATAAggtgttttttgattttataaat agCCCTTATGTATTCGAATGAAGAGGTTCCCTATGGGCAAGCAACGGACG ATGGACGTCAATGGACGGCTTTAAGACCTTTGGACGTCCTAAAAACGTAC ATTAGAggtccaaaagacgtttgtgcCCATTGGGTTCGTTCTAGTGGttg gtcagaagacaacat Run BLAST on NCBI transcript from alignment at sc0000002:325881..331058- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000528 ID=TCONS_00000528|Name=TCONS_00000528|organism=Clytia hemisphaerica|type=transcript|length=5178bp|location=Sequence derived from alignment at sc0000002:325881..331058- (Clytia hemisphaerica) AGATGTGAAATGTATTGATCAAGAATATTGAAATCAATCATATTTTCAGT
CATCATTGCGTTGTGATTGATCGAAACGGTTTCGTGGTTTATCAATCGAG
TTTTATGGAAAAGAATAAAAATCCAACTCTCGAAAATCAACACATCGTAA
AGATGGTAAGCTTCCATCTTGAATTGGTGCTTCAAAATTCCAAAATTGTT
TTTAAAGTTTTCTACTAGCTGAGAATTCAGGCAAAATATTAAGTAATATC
TTAGATCGCTAACTCGTGTTATAACCATAGATTTATAAAGCCCGAAAGGC
TAGATGTCGTGCTTTACGCCATCGCAGGCAAAAAAAGTGAATATAGGAAA
ACATGTTGTTGCTATTGTTTTCGAAAACCTGCGAAGCTTCTGATTGGTCA
AGCGCTGAAATTCTATTGTAATGTCACGTGACCTAGGTAGGATTTCCTAC
CTAACCACGGCACACTTTTCAGCAAAAGTACGCCATCTAGCCCTTCGGGC
TTTATAAATTTATGGTTATAGCCAAGCTATAAACCTTTTGGATATTGTCT
TATTGTCACTCGACGGACAATAAAGTTAAGGAATTTTAAACATTTAGACG
TGTTCAAGATAATTATCAACAGTAAATTCTCTATCCCACTGCAAACAATT
GATTGAATATTATTAATAAATTCTATGCCCAAGTACAGCCCCATCTCACA
GACCCACTGGGACCCCTTCCCACTGGAAAAAATGTCCAAAATATCGTCCA
CGCTGGAAAATGATTCTACAATTTTTGTCCCCACTTAAAATAATCAAATA
AACCGATCCTCACTCTCTTTTTCCCCATCCCCACTAAATTTTCTGGCTTG
AAAACAAAAGAATTGAAATCCCCAACCATAAAAATTATGGGAATATTAAT
CCCCATTGTGTTTTAGTCGGTAATTTTTATCCCCATTGGCTGAAAAATCC
TACCAGGTCTGCGAGAAGGGGGTGTCCAAGTTCTTACGGTTCATCAATTA
TACTGTAGAAAAAGTTCTTATTATTTTAGCATGGCGTGGTTGCGAAGAGT
ATGATAGAAGAGGGAGTGATGATAAAGAATTATTGTTTGGAAATCAGAAA
TAATATAACCATCAAGGAATGGTTTTATTCCGTAAGTTTCTTTAATATCA
CATTTTTTGAAAATTATTTACGGTAGACGAGGGATCTGTAAAATTCAAAG
CCAAACATTTCTTTTTCTTTGTAAGTTTGAAAAATTACGTATTCTTTATT
AAAATTAATTCTCACTCTTGGGATCCTGATAGACGGGGATTGTGATAAAG
AGGTGAAGGCACGGTGATCTTTCTGTGGAACATTTAGAAGATCGGGATTA
TTTTGGCTAGTTTACCCTGATCTCCAAATGTCCATACCTTCTCGGGGAAA
ATTTCGTCGAGGAAAATTTTCGTCGGGAAAAATTTTCGTCACTTGCTGGT
AGTTGGTAAACGCATTAAGGCCGGGGAAAATTTTCGTCGGGGACAAATAT
TCGTCACTTGGCCAAAATTTCGTCACTTTTGCCCGACGAAGTTTTCCCCG
ATAAGGTATAGAGATGAAATTTTGCACACAAAGTCACCTCATAGAAAGTC
AAAAGTAGAAAAAAGAAGTTTTTGATACATCCACCAGATCATAGGTTCCG
GGACACTTTCGTTTTTGAGAGATCCCTCTATCGCATCCTCATCCCGGGTG
GGATCCCTCTAAATCAGAATCAAGATAATAACGGATTAAAAAAAGCTAGA
AACTTAAAATTTTGAGAGAATGTGCTCTTTTATGCTCTTATGGGGTGGCA
AATTTTAATTAAACCATTACCGAGAGGTTTAAAAATTGTACCCTTGAAAG
TATAGACTGTATATAATCAAGCAAATTGGAGCAAAAATGAGGAACTTTAT
ACATCGTCATGACTTTTTTTTATCATTTTTCTATTTCAGCTTGACCACGT
GACAGAATCAAAGAAATATCAATCGAGTCGAAGTAGTTTGGATTATCGAG
TTGTACCTATAATTGGCTCCAATCTATTATTGCTATATATTAACGGTATT
AACGATTGTAGTGGTCTAGAAAGCTGCAATTGTCAAGACCCTACTGATGG
AGTAAGTTTTATCAACATTTCAGTAGAGGGTATTTTAATGCCTCAATGAT
TTCAATATTACTCTCGAGTACCTAATAGTCGGAGGGAGTTGGAATAAGCG
GGAGGGAGGGTTGAAAAAAATCTCAAAGCTTAGTAAGCGGGGGGGGGGGG
GGGGGGGGGAAAAAAAATCAGAAGTAGTGGGGAGGGGGGGGGGGGGGTGT
TGGAATAAAAATGTCCTGGGTGGAAAATTTTGAAAAGGAGGCTAATACAG
CAGGATTAAGGCAAAAGAGGGAACTTTTAAAAACATTTTCCCAAAAGTTA
ATAAGTGGGGGTTGGAATATGAATGTTCTGGGTGAAAAATTAATTAGCGG
GGGGCGCTTATTAGGTACCCAAGAGTATGTGTTGTAGAGCTAGTCTTTCA
CGATCCTACTGGTGGGGCCAAGTCAAGAATTCGCTTGCTTCCACACAATG
GTAAGAAAAAGGTGTTTACATTGCTCTTTTACTTAGGTCTTGTTATTTTT
GTGGTAAGATTAGATCCAGGTTGAAATAGTCTCAGATAAAAATGAGAGTT
TTTTCAAATAATATATACAAAAGTCCAAAATTTCCGACCCAACGGTATTT
GCAAATATCAACCTTAAGGTGATTTTTCGGAGGGGCCAAAATGGGGTAAT
TTCCGATTTTTGCCCACAAAAAGGTTTCCCGGGCCTAATTCGCGTTCTCC
CTCTCACCTCTCAAAAATATCTTATAGTATATACTGTTCTTTCGGATGGA
CTAAAAATGGCTAGGTCGTAAAAAAGATGTCACGGAACTCCAGGCTTTGC
CCACTACTTTGCCCACAANGTAAAAAAGATGTCACGAAACTCCAGGCTTT
GCCCCTACTTTAATTATGTGGTTACAATGCTTCATTTTTTTACCAAGAAG
GTAAAAAGTGAATTCTACATTTTATCATTTTTCAGGAAATATTTGGGTAT
TGTTCGAACGATATCAGCGAAACAAATTGTGAATGTCCTTGTATACAACC
CGTTACTTGTTTGAATGAGCTAGATGATACGTAAGAGTTTTTTATAACCC
TTTTGTTTCCCCTATTCTGAAATCAATATCGAGCTTCATCCAGGGGGGGG
GGGTACTAGGGTTGGCTTGAACAAAGTTGTGTTCATCGTGCACTTTTGAG
TTATGGAGACTCCACTATTTTCACCTTTCAGGGGCTTTTCATATTTTTAG
GACCAAACTTCAATGNTTTATAACCCCTTTGTTTCCCCTATTCTGAAATC
AATATCGAGCTTCATCCAGGGGGGGGGTACTAGGGTTGGCGGATGAGGGG
TATGTGCAGACGTCCGAAAACCGACCCATAGAGTGACTGATTTTTGCTGA
AAAGGTGACCCTTTCCTAAAATTGTGAACTTTTCCCATTTTAGCCCCACT
TGCCTTATAAACCTTACTCCACAACTTGAACAAAGTTGTGTTCCCCGTGC
GTGTTCAAGTTATAGAGACTCCACTGTTGTCATCTTTCAGAGACTTTTCA
CATTTTTAGGACCAAACTTCAATGTTATCCAGAAGACAAACGTAAAACGG
ACTTTTCAGGGAGATGGTATAAAGGAGATCTTTCTTCTTTACCACTCTGT
TTTGATCCAGAATGTAAAACACGGTAAATGCTTTTGTGTCATTTTAAAAT
TTTATTCTTTATACAAATAAATTTATTCTTTTTGGGTACACGTTTTTTTA
TAAGATGGTGTAAATCCATTTCATCATGTATATTCTTAACTTTTTTGGGA
AAATCACCCTACAATATTCTTACAGCATTCTTAGGCTAGGATCCTAATTC
AGACTAGATTTAACATTTAGTACATAGCGTCTCAAGCCTAAAATGGTATT
TTTGTGAAAGGAGTGAGCTTTTCTTGGGGGTAATTGACAATTGAAAATTG
AAAATGCTCTAAAAATGGCATTCTTAGCTTGAGTAGCATCATGGCAATAT
TCTTAGCATTATTCTTAATTTTTTTGCCATTTTCCTCATGGACATTCTTA
TAAAGAGTATTCTTATTAAAAAAGCGTGTATCTTTTGTTTTGGATTGCTT
GTATTTTGTCCTGAAAAACAAAGTTGAGAAACTGAAAAACTTTTTGTCGC
AGAAATTCATATGTTTGCTTTTTCAACGTGTAAGATTTAAGTATTTCGAG
GAAAAAACAAACTCTATGGTTTAACTCACTAAAACTTTTATTGATTGAAC
ATGTACAATTAATCTTTAGTGAGTTAAACCATAGAGCTCTGTTTCCGTCC
ACTGATGTTTTTCCGTGACAAGGAATCTTTCTTTATAGTCCGGATGTTTT
TCATTGAAGCAGTGAAAGCTACTTAACAATTTCTTTACTAGGAAAAGTTC
TGGTCAGTGTAATCGTTTCAAATCTGGTTGCAATTGGTGTCATAAATATC
CAAACGGAACATCCGCGATTGACGATCACAAATATTGTGAATACTCCGAC
AAAACATGTTTCCCAGATTTAATTCCTTTACGACGAAAGAAACACCATAC
TGGCAATAACCCACTTACATTGGAATATATCATCATAATATCAGTTCTCA
GTTTTATATTATTCATATGTTCGATATTGGTTGGCATTTACTTTTGTCGA
AAACGAAAAAATAACCGCAGAAGACAATCGCCTACTTCATCAACCGAAAG
TCAAGATTACCAAAATCCAAATTTCTATAATGATGAGGATCCTGATTACT
TTACGCCCTCAGGACCACCCCAACGCCCACCAGAAACCCCCGAATTACCT
ACGGTGGAAGTAGGAGCGGCTCGTGATGTAGTCTTTCATATGCGAGTTGA
CGATGCACAGTCACCAGCGTCAAGTAACGGAAATTTTTTCCCAGATTTTA
ATAGAAAGTATCAAGGTAACGTGGAGATCATTGAAGTATAAGGTGTTTTT
TGATTTTATAAATAGCCCTTATGTATTCGAATGAAGAGGTTCCCTATGGG
CAAGCAACGGACGATGGACGTCAATGGACGGCTTTAAGACCTTTGGACGT
CCTAAAAACGTACATTAGAGGTCCAAAAGACGTTTGTGCCCATTGGGTTC
GTTCTAGTGGTTGGTCAGAAGACAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000528-exon-sc0000002-1575043694:330904..331058 | TCONS_00000528-exon-sc0000002-1575043694:330904..331058 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1575043694:329928..330029 | TCONS_00000528-exon-sc0000002-1575043694:329928..330029 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1575043694:328958..329119 | TCONS_00000528-exon-sc0000002-1575043694:328958..329119 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1575043694:327929..328023 | TCONS_00000528-exon-sc0000002-1575043694:327929..328023 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1575043694:327336..327449 | TCONS_00000528-exon-sc0000002-1575043694:327336..327449 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1575043694:325881..326617 | TCONS_00000528-exon-sc0000002-1575043694:325881..326617 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1510915933:330904..331058 | TCONS_00000528-exon-sc0000002-1510915933:330904..331058 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1510915933:329928..330029 | TCONS_00000528-exon-sc0000002-1510915933:329928..330029 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1510915933:328958..329119 | TCONS_00000528-exon-sc0000002-1510915933:328958..329119 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1510915933:327929..328023 | TCONS_00000528-exon-sc0000002-1510915933:327929..328023 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1510915933:327336..327449 | TCONS_00000528-exon-sc0000002-1510915933:327336..327449 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1510915933:325881..326617 | TCONS_00000528-exon-sc0000002-1510915933:325881..326617 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1491911889:330904..331058 | TCONS_00000528-exon-sc0000002-1491911889:330904..331058 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1491911889:329928..330029 | TCONS_00000528-exon-sc0000002-1491911889:329928..330029 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1491911889:328958..329119 | TCONS_00000528-exon-sc0000002-1491911889:328958..329119 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1491911889:327929..328023 | TCONS_00000528-exon-sc0000002-1491911889:327929..328023 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1491911889:327336..327449 | TCONS_00000528-exon-sc0000002-1491911889:327336..327449 | Clytia hemisphaerica | exon |
TCONS_00000528-exon-sc0000002-1491911889:325881..326617 | TCONS_00000528-exon-sc0000002-1491911889:325881..326617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000002 | supercontig | sc0000002:325881..331058 - |
Blast
The following BLAST results are available for this feature:
|