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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000527 ID=TCONS_00000527|Name=TCONS_00000527|organism=Clytia hemisphaerica|type=transcript|length=4012bpRun BLAST on NCBI transcript from alignment at sc0000002:268592..359565- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000527 ID=TCONS_00000527|Name=TCONS_00000527|organism=Clytia hemisphaerica|type=transcript|length=90974bp|location=Sequence derived from alignment at sc0000002:268592..359565- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000527 vs. Swiss-Prot (Human)
Match: CAHD1 (VWFA and cache domain-containing protein 1 OS=Homo sapiens GN=CACHD1 PE=2 SV=2) HSP 1 Score: 162.925 bits (411), Expect = 2.998e-40 Identity = 241/1051 (22.93%), Postives = 416/1051 (39.58%), Query Frame = 2
Query: 5 DAHSKLKNFVRDFERKTEIAENVLNHMATYILEDYKTNNVGEQRSIESCCQFDESNLEFNSIFGEKISMDHICEQTPTSNSDICPTLGRPKSSEKVHLLNKKKILDSTRSIYEKEAKGEARNIQYDSLDGYSFTYPAYQDPSPMECTCAQRDPRFSSRLAETLAGNEGRHFVIVLDYSEKIQNT-IDIMRKVATTLFKLFTSKDMISVKFYHEDNLVPADKTADCL------KISSQATPYIKDKILGEIETKQPKGDAASYSKVFRESFTALKNDNSN-----QTEKHFIFVTSGHYIDNWSEID-----QVFKERRKTNSECND--MYFSLLLINDG--KLPKANFVKN----KNLKEGCNDNFIDFELSGD-------NNHFTINSKISEILPSGRNIDDKVYYIMPISDRFGRGTTIDACKAVVDKSSSSQNPMKGVVCLSFLTNEFIREE---WSQTENSYWFLIKRNGQTFIHPKFGQPLGSDELSRTVSILQTESSQSFKDEVYNNMIS--------GVPGSKTLS-HVMKPISRGPFGATSQNKTLTYTWKAVPKSDFIMTIVT-SSDYEKSELKITNQ--GGKENYHRIDLIPDNYANDLCKYSSEHVATKDLSVIKFPADAFQRPSFYFKLETNETVKELNDLFTPGNTATPPDELFKDMDVFNHLRQSVQATHLMEGYWKNDTSEAAKNT--LTRYIGMHNGFFRTFPGHLMNPSYDPRARPWYRLMIAQKG-ITLTTPYPDAFTGEIVMTXXXXXXXXXXXXXXAGNIA---MDFKPLYFKELLERSIKECASGA-----CVVIDRNGFVVYQSSFMEENENSTLENQHIVKMHGRLAKTMIENGVMI-KNYCLEFRNNVTVKEWF---YSLDHVIEAKSYSKGCLKDYHVVPIIDSNLLLLYINDRCDVKEKCTCREPINGERFGYCSNDISETNCECPCIQPV---TCLSDLRITPGRLECNP--EDKRKTDFSEKWFKGNISELTLCFDPECKKRDTWDNCESFKPACNWCFKFPNG-THVADEKKHCDYSDEECF 2953
+ S+++ + K +V+N + Y + +I+ CC S +EF+ F +S C++ T+ + N + L+S + K G + + S +G +PA++ C S + + + +H V++LD+ + +T + I + A + D ISV L AD C S AT K K+ + + + ++ F+++F +++ N+N T+ I++++G + SE D QV E NS N+ M + L+NDG L + F+++ + K G D + G +N T + LP+ R ID+ V+ +P SD G G + V K N + G+V + + +I E+ + + SY FLI G T +HP +P E I+ E+ F + V N++S VP + +LS H+ K G + ++Y WK V + FI+ IV + +LK N K YHR+DL+ A C + + +AT + I A +F P + + + E + NT L + + +R V AT + W ++ NT + RYI NG R +PG LM+ ++DP R WY +A G I+LT PY D V+T+ + + +A +DF YF ++L + C C +++ G++V + ++ ++ +E QHI +A ++ + + KN C F + TV+ ++ SL + + C K Y + I +N + +N+ CD C C +R + + + CECPC P+ C +L R NP E ++ G L C + C +R +C C WC +G TH+ +K +C +ECF
Sbjct: 80 NGESEVQQLAKKIREKFNRYLDVVNRNKQVVEASYTAHLTSPLTAIQDCCTIPPSMMEFDGNFNTNVSRTISCDRLSTTVNS--------------RAFNPGRDLNSVLADNLKSNPG-IKWQYFSSEEGIFTVFPAHK------FRCKGSYEHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISV-------LTVADTVRTCSLDQCYKTFLSPATSETKRKMSTFVSSVKSSDSPTQHAVGFQKAFQLIRSTNNNTKFQANTDMVIIYLSAGITSKDSSEEDKKATLQVINEE---NSFLNNSVMILTYALMNDGVTGLKELAFLRDLAEQNSGKYGVPDRMALPVIKGSMMVLNQLSNLETTVGRFYTNLPN-RMIDEAVFS-LPFSDEMGDGLIM-----TVSKPCYFGNLLLGIVGVD-VNLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKF-ELVRQNILSLPLGSQIIAVPVNSSLSWHINKLRETG-----KEAYNVSYAWKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYHRLDLLGQPSA---CLHFKQ-LATLESPTIMLSAGSFSSPYEHLSQPETKRMVEHYTAYLSDNT-----RLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYLHAVANPGLISLTGPYLDVGGAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIRCFIMEDRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDR-TVQRFYKFNTSLAGDLTNLVHGSHCSK-YRLARIPGTNAFVGIVNETCDSLAFCACSMV---DRLCLNCHRMEQNECECPCECPLEVNECTGNLTNAENR---NPSCEVHQEPVTYTAIDPGLQDALHQCVNSRCSQRLESGDCFGVL-DCEWCMVDSDGKTHL--DKPYCA-PQKECF 1064 The following BLAST results are available for this feature:
BLAST of TCONS_00000527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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