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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000517 ID=TCONS_00000517|Name=TCONS_00000517|organism=Clytia hemisphaerica|type=transcript|length=3992bpRun BLAST on NCBI transcript from alignment at sc0000002:268592..285233- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000517 ID=TCONS_00000517|Name=TCONS_00000517|organism=Clytia hemisphaerica|type=transcript|length=16642bp|location=Sequence derived from alignment at sc0000002:268592..285233- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000517 vs. Swiss-Prot (Human)
Match: CAHD1 (VWFA and cache domain-containing protein 1 OS=Homo sapiens GN=CACHD1 PE=2 SV=2) HSP 1 Score: 164.851 bits (416), Expect = 6.474e-41 Identity = 205/869 (23.59%), Postives = 355/869 (40.85%), Query Frame = 3
Query: 477 ILDYSEEIKDT-ISIVKKVAKTLLNLVTFKDEISVKFYHEDNLVPSDNKADCLK-ISSKATPYLKDKILQQIENKQPKGEAASYKKIFEETFQILYNDKNN-----QTEKHFIFVTSGYYKDGSWSEVEKG----FKDGRKSLECGVS-FSLLLIYDGKLAGATYSNNKNLAGVGCDIEGRDNFMEFELGKDNNHFTINSKISAILSSAKNF-----NDFDDKVHYIMPISDRFGRGTTIDACKAVVDKSSSSQNPMKGAVCLSFLTNEFIREE---WSQTENSYWFLIKRNGQTFIHPKFGQPLGSDELSRTVNILQIESSQSFKDEVYNDMISGVPGSKILSDVMMPISRG---------PFGATSQNKTLTYTWKAVPKSDFILTIVT-SSDYEKSELKITNQGGAED--YHRLDLWNSTYLDDHICKYSETQVAVKDLAVIKFPADAFLRPSIYFKLETNETVQELKDLFMPGETATPRGLFKSIDVFKNIRLSAQATKSMDQYWKNDTSEKAIS--IIARYIGMENGFFRIYPGLLMNPSYDPRARPWYRLMIAQKGM-TLTTPYLDAFTGETVMTLGQVLHMGKTSTEKAGNIA---MDFKLPYF-KVLLDKSINECETDGA----CVVIDRNGFVVYQSSFMEKNENSTLENQHIIKMHSRVAKSMIEEGVMI-KNYCLEFRNNITIKEWFYSLDHVTEAKKYESNRNCLDYRVVPIVDSNLLLLYINDACTLXXXXXXXXXXXXXRFGYCSNDISETNCECPCIQPV---TCLSDLRITPGRLECNP--EDKRKTDFSEKWFKGNISELTLCFDPECKKRDTWDNCESFKPACNWCFKFPNG-THVADEKKHCDYSDEECF 2933
ILD+ + DT + I K A+ +L+ + D+ISV + V + + C K S AT K K+ + + + + F++ FQ++ + NN T+ I++++G S E +K + L V + L+ DG + ++LA G + M + K + + +++S + ++ F N D+ + +P SD G G + V K N + G V + + +I E+ + + SY FLI G T +HP +P E +I+ E+ F + V +++S GS+I++ +P++ G + N ++Y WK V + FIL IV + +LK N + YHRLDL H Q+A + I A +F P + + + E ++ T L + + ++R AT + W +++ I+ RYI NG RIYPG LM+ ++DP R WY +A G+ +LT PYLD V+T+ +H T +A +DF L YF KVL+D + C DG C +++ G++V + ++ ++ +E QHI VA ++ + KN C F + + + ++ + +C YR+ I +N + +N+ C ++ +R + + + CECPC P+ C +L R NP E ++ G L C + C +R +C C WC +G TH+ +K +C +ECF
Sbjct: 232 ILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISVLTVADT--VRTCSLDQCYKTFLSPATSETKRKMSTFVSSVKSSDSPTQHAVGFQKAFQLIRSTNNNTKFQANTDMVIIYLSAGITSKDSSEEDKKATLQVINEENSFLNNSVMILTYALMNDGVTGLKELAFLRDLAEQNSGKYGVPDRMALPVIKGS--MMVLNQLSNLETTVGRFYTNLPNRMIDEAVFSLPFSDEMGDGLIM-----TVSKPCYFGNLLLGIVGVD-VNLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKF-ELVRQNILSLPLGSQIIA---VPVNSSLSWHINKLRETGKEAYN--VSYAWKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYHRLDLLGQPSACLHF-----KQLATLESPTIMLSAGSFSSPYEHLSQPETKRMVEHYTAYLSDNTR----LIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYLHAVANPGLISLTGPYLDVGGAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDL-LPVCNQDGGNKIRCFIMEDRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDRTVQRFYKFNTSLAGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNETC---DSLAFCACSMVDRLCLNCHRMEQNECECPCECPLEVNECTGNLTNAENR---NPSCEVHQEPVTYTAIDPGLQDALHQCVNSRCSQRLESGDCFGVL-DCEWCMVDSDGKTHL--DKPYCA-PQKECF 1064 The following BLAST results are available for this feature:
BLAST of TCONS_00000517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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