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TCONS_00000515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000515
Unique NameTCONS_00000515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000515 ID=TCONS_00000515|Name=TCONS_00000515|organism=Clytia hemisphaerica|type=transcript|length=834bp
AATAATCTTAATGTTTTGATTCTTGTTTGTTTACAATTTCttgcaatctg
attggatgattgGATGGTTTTCAAAGGGCCTAGCTTCTTTCCTATCAAAA
GAATTTGGAATTGCGGCTAAATAGTTTTCCTTGGTCACATAGCCTAAGAT
AATTTCTTCACAGTTTCTGCTTCAATATTTCTGTATGTAAAGCCACCAAA
TCAGAACAAGTGACAGCCGCAAGAAGCAGGAGTCAAGTCAAGTCGCATCG
AAGAATTTGGACAAACTTTGCACTTTTCCTTCTTTAACTCAAATTCAAAA
TGCTTGGTGCCCTGAGACGTGGATTATTCTCAACTAGCAGACTCCCAGTC
AACACAACCAGAAGATTTATGAGTGAAGATGCCAAAAAGGAAATGacTGT
TCCACGTATGGTTGGATCCTTAGCAGTCATCTTTGCCGCTTTGTTAGGTA
CACCTATGCTTCTGATGGCCACCCGTGAACGCCCAACCGAAGGAAAGTAA
ATTTCGTCAATCAGCACAGTGCAATGTCATGTATaatatcattatttttc
aaGTGTCGACACaattaaattgtaaatttttaaagCTGGTTTCAAGAAAG
ACCTaaaatttaacaattttttatcataattcCCTGATTTGAAGTGTTTT
CACGAAATACCGGCTCCGATTTTGATACAAAACTAGTCATGTCTGATGAc
ggtgaaaatggtcattttccGGGATTCCCGAATTCGAAAAAAACACCTGA
GTTTTTTGTATTTCATACCCCTGCTTTTTTAATCACCCGTGCTATTTCGT
AGCATTTAAACTTCAataaaaggttgtttttttt
Run BLAST on NCBI

transcript from alignment at sc0000002:255120..257544-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000515 ID=TCONS_00000515|Name=TCONS_00000515|organism=Clytia hemisphaerica|type=transcript|length=2425bp|location=Sequence derived from alignment at sc0000002:255120..257544- (Clytia hemisphaerica)
AATAATCTTAATGTTTTGATTCTTGTTTGTTTACAATTTCTTGCAATCTG ATTGGATGATTGGATGGTTTTCAAAGGGCCTAGCTTCTTTCCTATCAAAA GAATTTGGAATTGCGGCTAAATAGTTTTCCTTGGTCACATAGCCTAAGAT AATTTCTTCACAGTTTCTGCTTCAATATTTCTGTATGTAAAGCCACCAAA TCAGAACAAGTGACAGCCGCAAGAAGCAGGAGTCAAGTCAAGTCGCATCG AAGAATTTGGACAAACTTTGCACTTTTCCTTCTTTAACTCAAATTCAAAA TGCTTGGTGCCCTGAGACGTGGATTATTCTCAACTAGCAGACTCCCAGTC AACACAACCAGAAGATTTATGAGTGAAGATGCCAAAAAGGAAATGGTAAG TTATGTAAATAATCTTACCTCGCTCTCCTCTGTGAATGAATCTGCCTGGC TCTCAGCTTTTTTTTGTCGATGGTACTGCTAGAAATTTTATTGTGAAATA ATTTTGGGAAATTGGGCAAATTCAGTGAGAAAATTCAGAGGAAGTGGGAG ATTTTGAAAGAAATTTTTTGTATGATTAATTAACCCACTGGGAAACCTAA AATAACCATCAAAACAAACCCTTTTTGGAAATTCTAGAGAATGTCCAAAA TTAATTCCACCAAATAATAGTACAATAACTAGTAAAAAAGCCACGTTGCC AGAACATTTTTGCTTTTAATTCACACCATAGTGGATTACATGCAAAGTTG ATGGCAGCAAATTTTCTGTGTTCGGATTTGATTAGAAAGTATGCAAAACC TATGCTAAAAGATATATATAAAGTAGAATAAATATGAAACTTACATGTAC AATTGACATTATACCACAAGTTGCTATTGGTCTAATGTTGACATCCGACA TCTAATCTAACACCCTCCTTTAGAGATAGGAATAACAAGAAGGTAAGAAT CGATGATTGAAAATAGATTTCTTTGCTTTGCTATCAGAGAAAAAAAATCT TTTTTCAATCAGTGATTCTGACATTCCTATTATTTCTATCCTACGATATT GACCCTGTAAGTGTCAATCTTCTTTTTCACACCCGACCTATTTGACGACC CTGCCAATTCCCTGGACAATCCAGGGATTTCTTGTAAATGTCCAGGGATT TTAACATTTATTTTGAAACTTAGTGCCCCGGACGCCCCGGACTTGGTGCG TTGTTTGCGCTACGCACGTAAAGATAGTGAAATATGCCTTACTGGCACTG TGATGTGCCGTACTGTCTATGTGGCGTGTTGTACCTGATCGTGCGGTACA TTTAGATGGTTGTGCAGCGTGCCTCTACGGACGCGCGTGATGGTGCACAA GTTACATGTCCGGGGAAATATAGTTTTTTTTCGATCCTAGACATTTACCC CGGATTGTCCGGGGAATCAGCAGGGTCGTCCTATTTGCCAGGACATTTTT TCACACCACAACCTATTTAGCGCATGTCAGCATATGCCAACATAGGCAAA AGGTAGCGATTTTCACTTCATTTTCTGAATAATACAAGAAGTATCAGCCA AGGACTATAAAATTTTGAGTTGAACATTGTAGAATAGTTACTTTTCAACA TCAAAGTTTGTAACTATTCATTCTTTTCATTTCAAACCATCTAATGCAAA ATCTTTGTAGAAAATGATAAATTTCTGGCAAAAAGGTCGAGATTTCGCAT GTCGTCATTTGCCGACATCGGCAGTTAATAGGTCAAGGTGCAACCTACTT AGAGGCCTTCCAATTATTATCAGCAGGAAAGAGTGTTATTAGATGACATT ATACCAAATTACGATATCAGAATTATTGAGTGTTGCATATGCAATAGCCT ATGGGAAGTGATAGAGCTTCTAGAGATTAGAATGTAGGTGTCTGAACCCT CTTGCGCTGTCTCAAAACTTATTTATGAAGTTTAAATAGCAGAGAAAAAT AATGCAATTTAAAGTTTTATATTTATTTGTTTTTAGACTGTTCCACGTAT GGTTGGATCCTTAGCAGTCATCTTTGCCGCTTTGTTAGGTACACCTATGC TTCTGATGGCCACCCGTGAACGCCCAACCGAAGGAAAGTAAATTTCGTCA ATCAGCACAGTGCAATGTCATGTATAATATCATTATTTTTCAAGTGTCGA CACAATTAAATTGTAAATTTTTAAAGCTGGTTTCAAGAAAGACCTAAAAT TTAACAATTTTTTATCATAATTCCCTGATTTGAAGTGTTTTCACGAAATA CCGGCTCCGATTTTGATACAAAACTAGTCATGTCTGATGACGGTGAAAAT GGTCATTTTCCGGGATTCCCGAATTCGAAAAAAACACCTGAGTTTTTTGT ATTTCATACCCCTGCTTTTTTAATCACCCGTGCTATTTCGTAGCATTTAA ACTTCAATAAAAGGTTGTTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000319XLOC_000319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000515-exon-sc0000002-1575043694:257150..257544TCONS_00000515-exon-sc0000002-1575043694:257150..257544Clytia hemisphaericaexon
TCONS_00000515-exon-sc0000002-1575043694:255120..255558TCONS_00000515-exon-sc0000002-1575043694:255120..255558Clytia hemisphaericaexon
TCONS_00000515-exon-sc0000002-1510915933:257150..257544TCONS_00000515-exon-sc0000002-1510915933:257150..257544Clytia hemisphaericaexon
TCONS_00000515-exon-sc0000002-1510915933:255120..255558TCONS_00000515-exon-sc0000002-1510915933:255120..255558Clytia hemisphaericaexon
TCONS_00000515-exon-sc0000002-1491911889:257150..257544TCONS_00000515-exon-sc0000002-1491911889:257150..257544Clytia hemisphaericaexon
TCONS_00000515-exon-sc0000002-1491911889:255120..255558TCONS_00000515-exon-sc0000002-1491911889:255120..255558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:255120..257544 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
284.049 298.525 368.983 434.058 263.332 218.372 315.564 333.619 360.192 320.13 420.685 398.5 296.959 340.857 264.405 250.471 402.009 411.26 187.844 164.804 451.029 439.537 258.778 255.799 403.093 392.441 329.477 339.166 248.929 224.348
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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