TCONS_00000512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000512
Unique NameTCONS_00000512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000512 ID=TCONS_00000512|Name=TCONS_00000512|organism=Clytia hemisphaerica|type=transcript|length=708bp
TATTTAAAGGTTTCAAACAAGTGCATTTGACTGAAGtctgttaaccaatc
aaattcaaGAAAGCTTTACAACCAGCCAatcagaatgttgaaaaagataA
CAAGCGAGCCAATCATATTTCTTTATGCCACCGTGTACATGATCAACTTG
TCCATTCTGCCACAGTTggttcttcaaaaagtttgtttacaaaaacatta
tggaaattcaactctgtgtggtGAAAAATCTGGGTTGGCAATCACACAAG
AGATGAAGAAGGAAACGTCTCATTGGTGGTTCGCTATCCTTGCTTCATCT
CAAATTCCCGCCATTTTTACCGTTCTCATCTGGGGACCAATCAGCGACGC
GATCGGTCGGAAGAAAGCAATGTTGTTGATTCCAATAATGAGTATTTTGC
AGAATATTGTTTTCCTGTTATGCTCCTATTATATCAATTCTTCGATCATT
TATTTGTGTTTTGGAATGTTTTTGGCGTGTTTTTTTGGAGAATTTCCAGG
AGTACTAGCTTTATCCTGTGCATTCATTGCAGATGTTACAGCGGGTCTAA
AAGCTAAATCTCGAGTCACTAGAATGGCGCTTATAGATTGTGCTGTTAAT
CTAGCTGGGTTACCTGCAGGGCTTTTCGCTGGTCAGCTTTTAAAACATCT
AGGATTCACAGCTGTCTTTGGACTTTCGATCGGAATCAATCTGTTGTTGT
TAGCTTAC
Run BLAST on NCBI

transcript from alignment at sc0000002:209065..210774-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000512 ID=TCONS_00000512|Name=TCONS_00000512|organism=Clytia hemisphaerica|type=transcript|length=1710bp|location=Sequence derived from alignment at sc0000002:209065..210774- (Clytia hemisphaerica)
TATTTAAAGGTTTCAAACAAGTGCATTTGACTGAAGTCTGTTAACCAATC
AAATTCAAGAAAGCTTTACAACCAGCCAATCAGAATGTTGAAAAAGATAA
CAAGCGAGCCAATCATATTTCTTTATGCCACCGTGTACATGATCAACTTG
TCCATTCTGCCACAGTTGGTTCTTCAAAAAGTTTGTTTACAAAAACATTA
TGGAAATTCAACTCTGTGTGGTGAAAAATCTGGGTTGGCAATCACACAAG
AGATGAAGAAGGTAAAATTTCAACACATCTCAACTCATATTAGACTTAGA
CTGGCACGCCAGTCGGGCTGGAACGGTATCACGCGGGAAAAGTGAGCGTA
GGAGTTAGGTAAGCGTAAGAAGAAATTCATTTGTCGGTGGCAAGGGCTGA
AATCCCTTAATCAGCAGCCTCTCACCAAGTTTTGATCGTTCTTCTACGCA
GCTCCTATTCTAGCAAACGCCCGCTGCCTTTATGCTCCCGCCCTCTGACA
TGATTAATTAACAGACTAGTTTGCTAGTCTAACTAGACTATACTCCTGGT
GGGGGGGGGTACTTAGACAAAATTGGGTACGGGGACTTGTTGCTGGTCAG
GGTCCCTTTTCTAGGCTCTGAAGAAATCAGTAATAGAGTCCCAAGTTTAA
TAGTTTTCAAGATTTGTACCTGACAGGGTCAACTTTTGGTTATTTTGTAT
GATTTTCAAGGTGAAATTAGAGCATTTTTCAATTTTTCGTCTCAGTAATT
TTTGCAACTTTTCAGGTTCCCATATTTACCAAACATTCATATCTTACAGG
TTCTAGTTTTAAGCTCCAGAGGCATTCCCCGTCGGCCGTCAAGGTCTTCC
CCCGGGCTTATGCTATAGTCTAACACTTTGTCACCTTCTGAAAAATAATA
TCCAAGGCGAAGAAAATTCGTGAACGGGTTTTGCTTTCAAAGCGAGTTTA
AAGCCGTAGAGTATGCAATGTTGATTAGTCCGAAAAGGGCGTGCAGGTTG
TACAGACAGGGACAGACAGAAACCTACCTAGGCAAAAGCATAGGCTTTGC
AGATATACTGCAAAGATCACGGCACAAAACCCACGTCCGATCTTTTAATA
AAATATAGAAAAATGACACAATCTTACGCATATCGAGAATCTTCGCTAAA
AATGAGTTTGCGAGTTTGAGGCTCAAATCAAATCTATCTATCAGGTTTAT
AAGTCTTGTGTGTTGAAATTTTGTTATTACATTTCACAATTTTATGATAT
TATTGAATTTTAGGAAACGTCTCATTGGTGGTTCGCTATCCTTGCTTCAT
CTCAAATTCCCGCCATTTTTACCGTTCTCATCTGGGGACCAATCAGCGAC
GCGATCGGTCGGAAGAAAGCAATGTTGTTGATTCCAATAATGAGTATTTT
GCAGAATATTGTTTTCCTGTTATGCTCCTATTATATCAATTCTTCGATCA
TTTATTTGTGTTTTGGAATGTTTTTGGCGTGTTTTTTTGGAGAATTTCCA
GGAGTACTAGCTTTATCCTGTGCATTCATTGCAGATGTTACAGCGGGTCT
AAAAGCTAAATCTCGAGTCACTAGAATGGCGCTTATAGATTGTGCTGTTA
ATCTAGCTGGGTTACCTGCAGGGCTTTTCGCTGGTCAGCTTTTAAAACAT
CTAGGATTCACAGCTGTCTTTGGACTTTCGATCGGAATCAATCTGTTGTT
GTTAGCTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000316XLOC_000316Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000512-exon-sc0000002-1575043694:210514..210774TCONS_00000512-exon-sc0000002-1575043694:210514..210774Clytia hemisphaericaexon
TCONS_00000512-exon-sc0000002-1575043694:209065..209511TCONS_00000512-exon-sc0000002-1575043694:209065..209511Clytia hemisphaericaexon
TCONS_00000512-exon-sc0000002-1510915933:210514..210774TCONS_00000512-exon-sc0000002-1510915933:210514..210774Clytia hemisphaericaexon
TCONS_00000512-exon-sc0000002-1510915933:209065..209511TCONS_00000512-exon-sc0000002-1510915933:209065..209511Clytia hemisphaericaexon
TCONS_00000512-exon-sc0000002-1491911889:210514..210774TCONS_00000512-exon-sc0000002-1491911889:210514..210774Clytia hemisphaericaexon
TCONS_00000512-exon-sc0000002-1491911889:209065..209511TCONS_00000512-exon-sc0000002-1491911889:209065..209511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:209065..210774 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0991844	0	0	0.766937	1.23784	0.42748	0.690831	1.13487	0.342831	0.582654	0.52192	0.839437	0.549291	0	1.40585	1.70723	0.826418	4.06007	1.48855	0.116901	0.571401	1.5704	1.04355	0	0.553831	0	0.0202506
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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