|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000486 ID=TCONS_00000486|Name=TCONS_00000486|organism=Clytia hemisphaerica|type=transcript|length=3686bp
CGAAATTGTACTGCTCCCTTTTTTTACTTCCAAAACacacaaaataaaga
aaatattcttattttctagTGCGTCTTATGggaataacaaaataaattgt
tattatttttcataCTGAATTATTAAAGAAGGCTTGGTTAGCCCCTTAAA
ACATTTACACTACTGTAGTGTCAAAGATTACAAATTATTGAAATTggtgc
aaaaatattttttattggtttgtttGTTGGTTGGAAGGGCAAAAACCTTC
ATTGTTATTTTAAACAGGAAAAAAGTGTGAAGAAAGTTTTAACTCGTTAT
TTCCTTGATAAAGGTGAAAAAGAGGtggagagagagagaaaaaaagactT
GAACCAAATATCGATACATTTGATTTTGGGGTTCATTATCAAAACGCTAT
AATGATGACTTTTTGTTCGACGACCAACAATCGAAAGAAGAACGCACAAT
TCACAATCTCGACTAGTGCTAAAGAAAAGACTGTACCGAATAGTTACGAT
AATAGATCGTTTTTACGCGATTCTTTTACGAACATTTCTGATTACGACAA
TCAGCAACATCGTCAACAACGCTCGCCGATCCTTTCCAAAAATAACCGAA
GTTGTCAATCTGTGTACAACGAAAACATGAGAAATTTGACAAACCTGTCA
CTATCACCGTCACCGTCGGTAAACAGTAAAGACAAAACAATCATCTCAAA
TAATGATGTTACTTTTTCGATCGATGCAACTTCTTCATCAAATACTAAAC
TACCTCCAATTATGGATGATTTATGCCTTAGTAACAATAAAcggaatttt
gattggttgaactGTAAATCTACAAATAACATTGTTGTAAACCCATTATC
AACTTCATCCACACTATCATTAACCGCAGCAACAAATCATCATTCTCCTC
TTaaacaacaatcgaacaatTTAATTAAAACTTTCAGTAACAGTAACAAC
AAGATAGACACTAAAGCGCATTTCTCATCGTCGTCAACTATAACACAATC
ACAGATTGGGACAAAATGGAATAAAACTTTCATCAAATCCTCATCACAGT
CTGCTATCTCAACACCAAGAACAATTAATTTAATGTCACCATCAAACAGC
GTGCCTTCTTTTAATTATCGAGGAGGTTTATCGAGCATGTCGATTTCTGA
ACGTGGTGGAGATTCGGGTCACAAAGAAGAGACCAGCCGAGGGGGATCGG
ACAGAAAGGTGTCTTCTAGCAAAGGAACACTGGACAAATATTTCTCCTCT
GATGATATCANTATTTCCTTGATAAAGGTGAAAAAGAGGtggagagagag
agaaaaaaagactTGAACCAAATATCGATACATTTGATTTTGGGGTTCAT
TATCAAAACGCTATAATGATGACTTTTTGTTCGACGACCAACAATCGAAA
GAAGAACGCACAATTCACAATCTCGACTAGTGCTAAAGAAAAGACTGTAC
CGAATAGTTACGATAATAGATCGTTTTTACGCGATTCTTTTACGAACATT
TCTGATTACGACAATCAGCAACATCGTCAACAACGCTCGCCGATCCTTTC
CAAAAATAACCGAAGTTGTCAATCTGTGTACAACGAAAACATGAGAAATT
TGACAAACCTGTCACTATCACCGTCACCGTCGGTAAACAGTAAAGACAAA
ACAATCATCTCAAATAATGATGTTACTTTTTCGATCGATGCAACTTCTTC
ATCAAATACTAAACTACCTCCAATTATGGATGATTTATGCCTTAGTAACA
ATAAAcggaattttgattggttgaactGTAAATCTACAAATAACATTGTT
GTAAACCCATTATCAACTTCATCCACACTATCATTAACCGCAGCAACAAA
TCATCATTCTCCTCTTaaacaacaatcgaacaatTTAATTAAAACTTTCA
GTAACAGTAACAACAAGATAGACACTAAAGCGCATTTCTCATCGTCGTCA
ACTATAACACAATCACAGATTGGGACAAAATGGAATAAAACTTTCATCAA
ATCCTCATCACAGTCTGCTATCTCAACACCAAGAACAATTAATTTAATGT
CACCATCAAACAGCGTGCCTTCTTTTAATTATCGAGGAGGTTTATCGAGC
ATGTCGATTACTGAGCGTGGTGGAGATTCGGCTCACAAAGAAGAGACCAG
CCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGCAAAGGAACACTGGACA
AATATTTCTCCTCTGATGATATCATTCACGAATACCCTGATGAAAATATA
CAAAACGGATCATTCTTAGAAATCGGGCAAGTCTCCGAGGGGGATCGGAC
AGAAAGGTGTCTTCTAGCAAAGGAACACTGGACAAATATTTCTCCTCTGA
TGATATCATTCACGAATACCCTGATGAAAATATACAAAACGGATCATTCT
TAGAAATCGGGCAAGTCTGCGAGGAGGAGAGCTCCACCGATAATGACTTT
ATAGCGCCGCTTGAACGGCCTATCGGTGGTTTAAAACGCTCATGTACGAA
TGATGAACGTATGATGACCTTGAGAGAGATCCCGTTACAACGCTGCCAAA
GTATTGATAGCACAAAAGGTCTTCAAAAACAAATAGATGAACAGGCTCGC
TTCTTTTCAGAGCAGACAAGCCTTCGACCTCGTCAACGCAAAACATCATC
TAATGAGAAACCTCAACAAACAAACACTAATACAGCGGTAACAAAAAGCC
GTAAAAAATTACTAAGACGTTCTATGTCGActggtttttcgaaaataaaa
ctCATCAAATCAAGCATTTCATTCACAAAAAGTCATCAGCGTTTTACGGA
TGAGGAACTAAACAGCGTCGATATTAAAGACTCTGACCATCAGACGTCGC
GTCGTAAAAACACGTCGTGCTCGTCTCCTCTTGACGAATATATTGAAGAA
ATGAGTAAGGGAGAGAATCCTGATCGGGATGTTGACTCGAACCCGGCTGC
TGTACCGTTCTTAAGAAGCATTAGTGCTCCTGAACAAATCGATAAACTTG
ATGGCGATGTTTATGATGAAGATTTATCGGAGCTCTATTTACCGAGGCGT
CGTGCAATTTGTCCAAATCTGCCAGTCCCGGCAATGAAGCAACTGAAAAC
ATACCTGATTTTAACGAGACTTAAACAATACTGTTTTGTATGATGTTGAG
GGTAAAGAAGATGAAGAATGTGTAAGGAGGTAAACTTTTCGAAGCCACAC
CTATATTCCTGGAGCttgattttatttgatttgcGATAAATGGCTCCAAC
TATAAAATACAATTATTAAGATCTGGGAGAAGACCGTGAGGCAGAAATAT
CAATAAGCATAGATATGATGTGTTTTTAACTGTTACAATTTTCTTATCAT
ATGATAAaggaaagattttttgatttgttttaaacaaaagagGAGACAGT
TCTATGATATGAGGCTGGTTCTGGAAAATAGTGCGATGAAAAATACACTA
TtataaaattttgttgaaaatgtgTATCAATCTTGAAAGACTTGAAGtaa
gagaagtaaaaaaatctGTTGTAAAAGCTAACCCAACCCCAAGTATCAAA
GTATGAACTGTaatataagatttttttatcaGATCGAGGTTTTGGTTTAG
ATATATATTACAAGACGGAGTTATCTTGATTATAGCTTTCTTATCTCTTG
TAAAGCTTGGTTTCCACTGTGTGATAACATGTGATA Run BLAST on NCBI protein sequence of TCONS_00000486-protein >TCONS_00000486-protein ID=TCONS_00000486-protein|Name=TCONS_00000486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MMTFCSTTNNRKKNAQFTISTSAKEKTVPNSYDNRSFLRDSFTNISDYDN
QQHRQQRSPILSKNNRSCQSVYNENMRNLTNLSLSPSPSVNSKDKTIISN
NDVTFSIDATSSSNTKLPPIMDDLCLSNNKRNFDWLNCKSTNNIVVNPLS
TSSTLSLTAATNHHSPLKQQSNNLIKTFSNSNNKIDTKAHFSSSSTITQS
QIGTKWNKTFIKSSSQSAISTPRTINLMSPSNSVPSFNYRGGLSSMSITE
RGGDSAHKEETSRGGSDRKVSSSKGTLDKYFSSDDIIHEYPDENIQNGSF
LEIGQVSEGDRTERCLLAKEHWTNISPLMISFTNTLMKIYKTDHS Run BLAST on NCBI transcript from alignment at sc0000002:1485497..1490028+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000486 ID=TCONS_00000486|Name=TCONS_00000486|organism=Clytia hemisphaerica|type=transcript|length=4532bp|location=Sequence derived from alignment at sc0000002:1485497..1490028+ (Clytia hemisphaerica)
CGAAATTGTACTGCTCCCTTTTTTTACTTCCAAAACacacaaaataaaga
aaatattcttattttctagTGCGTCTTATGggaataacaaaataaattgt
tattatttttcataCTGAATTATTAAAGAAGGCTTGGTTAGCCCCTTAAA
ACATTTACACTACTGTAGTGTCAAAGATTACAAATTATTGAAATTggtgc
aaaaatattttttattggtttgtttGTTGGTTGGAAGGGCAAAAACCTTC
ATTGTTATTTTAAACAGGAAAAAAGTGTGAAGAAAGTTTTAACTCGTTAT
TTCCTTGATAAAGGTGAAAAAGAGGtggagagagagagaaaaaaagactT
GAACCAAATATCGATACATTTGATTTTGGGGTTCATTATCAAAACGCTAT
AATGATGACTTTTTGTTCGACGACCAACAATCGAAAGAAGAACGCACAAT
TCACAATCTCGACTAGTGCTAAAGAAAAGACTGTACCGAATAGTTACGAT
AATAGATCGTTTTTACGCGATTCTTTTACGAACATTTCTGATTACGACAA
TCAGCAACATCGTCAACAACGCTCGCCGATCCTTTCCAAAAATAACCGAA
GTTGTCAATCTGTGTACAACGAAAACATGAGAAATTTGACAAACCTGTCA
CTATCACCGTCACCGTCGGTAAACAGTAAAGACAAAACAATCATCTCAAA
TAATGATGTTACTTTTTCGATCGATGCAACTTCTTCATCAAATACTAAAC
TACCTCCAATTATGGATGATTTATGCCTTAGTAACAATAAAcggaatttt
gattggttgaactGTAAATCTACAAATAACATTGTTGTAAACCCATTATC
AACTTCATCCACACTATCATTAACCGCAGCAACAAATCATCATTCTCCTC
TTaaacaacaatcgaacaatTTAATTAAAACTTTCAGTAACAGTAACAAC
AAGATAGACACTAAAGCGCATTTCTCATCGTCGTCAACTATAACACAATC
ACAGATTGGGACAAAATGGAATAAAACTTTCATCAAATCCTCATCACAGT
CTGCTATCTCAACACCAAGAACAATTAATTTAATGTCACCATCAAACAGC
GTGCCTTCTTTTAATTATCGAGGAGGTTTATCGAGCATGTCGATTTCTGA
ACGTGGTGGAGATTCGGGTCACAAAGAAGAGACCAGCCGAGGGGGATCGG
ACAGAAAGGTGTCTTCTAGCAAAGGAACACTGGACAAATATTTCTCCTCT
GATGATATCANTATTTCCTTGATAAAGGTGAAAAAGAGGtggagagagag
agaaaaaaagactTGAACCAAATATCGATACATTTGATTTTGGGGTTCAT
TATCAAAACGCTATAATGATGACTTTTTGTTCGACGACCAACAATCGAAA
GAAGAACGCACAATTCACAATCTCGACTAGTGCTAAAGAAAAGACTGTAC
CGAATAGTTACGATAATAGATCGTTTTTACGCGATTCTTTTACGAACATT
TCTGATTACGACAATCAGCAACATCGTCAACAACGCTCGCCGATCCTTTC
CAAAAATAACCGAAGTTGTCAATCTGTGTACAACGAAAACATGAGAAATT
TGACAAACCTGTCACTATCACCGTCACCGTCGGTAAACAGTAAAGACAAA
ACAATCATCTCAAATAATGATGTTACTTTTTCGATCGATGCAACTTCTTC
ATCAAATACTAAACTACCTCCAATTATGGATGATTTATGCCTTAGTAACA
ATAAAcggaattttgattggttgaactGTAAATCTACAAATAACATTGTT
GTAAACCCATTATCAACTTCATCCACACTATCATTAACCGCAGCAACAAA
TCATCATTCTCCTCTTaaacaacaatcgaacaatTTAATTAAAACTTTCA
GTAACAGTAACAACAAGATAGACACTAAAGCGCATTTCTCATCGTCGTCA
ACTATAACACAATCACAGATTGGGACAAAATGGAATAAAACTTTCATCAA
ATCCTCATCACAGTCTGCTATCTCAACACCAAGAACAATTAATTTAATGT
CACCATCAAACAGCGTGCCTTCTTTTAATTATCGAGGAGGTTTATCGAGC
ATGTCGATTACTGAGCGTGGTGGAGATTCGGCTCACAAAGAAGAGACCAG
CCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGCAAAGGAACACTGGACA
AATATTTCTCCTCTGATGATATCATTCACGAATACCCTGATGAAAATATA
CAAAACGGATCATTCTTAGAAATCGGGCAAGTCTGCGAGGAGGAGAGCTC
CACCGATAATGACTTTATAGCGCCGCTTGAACGGCCTATCGGTGGTTTAA
AACGCTCATGTACGAATGATGAACGTATGATGACCTTGAGAGAGATCCCG
TTACAACGCTGCCAAAGTATTGATAGCACAAAAGGTCTTCAAAAACAAAT
AGATGAACAGGCTCGCTTCTTTTCAGAGCAGACAAGCCTTCGACCTCGTC
AACGCAAAACATCATCTAATGAGAAACCTCAACAAACAAACACTAATACA
GCGNTGTGTACAACGAAAACATGAGAAATTTGACAAACCTGTCACTATCA
CCGTCACCGTCGGTAAACAGTAAAGACAAAACAATCATCTCAAATAATGA
TGTTACTTTTTCGATCGATGCAACTTCTTCATCAAATACTAAACTACCTC
CAATTATGGATGATTTATGCCTTAGTAACAATAAAcggaattttgattgg
ttgaactGTAAATCTACAAATAACATTGTTGTAAACCCATTATCAACTTC
ATCCACACTATCATTAACCGCAGCAACAAATCATCATTCTCCTCTTaaac
aacaatcgaacaatTTAATTAAAACTTTCAGTAACAGTAACAACAAGATA
GACACTAAAGCGCATTTCTCATCGTCGTCAACTATAACACAATCACAGAT
TGGGACAAAATGGAATAAAACTTTCATCAAATCCTCATCACAGTCTGCTA
TCTCAACACCAAGAACAATTAATTTAATGTCACCATCAAACAGCGTGCCT
TCTTTTAATTATCGAGGAGGTTTATCGAGCATGTCGATTACTGAGCGTGG
TGGAGATTCGGCTCACAAAGAAGAGACCAGCCGAGGGGGATCGGACAGAA
AGGTGTCTTCTAGCAAAGGAACACTGGACAAATATTTCTCCTCTGATGAT
ATCATTCACGAATACCCTGATGAAAATATACAAAACGGATCATTCTTAGA
AATCGGGCAAGTCTGCGAGGAGGAGAGCTCCACCGATAATGACTTTATAG
CGCCGCTTGAACGGCCTATCGGTGGTTTAAAACGCTCATGTACGAATGAT
GAACGTATGATGACCTTGAGAGAGATCCCGTTACAACGCTGCCAAAGTAT
TGATAGCACAAAAGGTCTTCAAAAACAAATAGATGAACAGGCTCGCTTCT
TTTCAGAGCAGACAAGCCTTCGACCTCGTCAACGCAAAACATCATCTAAT
GAGAAACCTCAACAAACAAACACTAATACAGCGGTAACAAAAAGCCGTAA
AAAATTACTAAGACGTTCTATGTCGActggtttttcgaaaataaaactCA
TCAAATCAAGCATTTCATTCACAAAAAGTCATCAGCGTTTTACGGATGAG
GAACTAAACAGCGTCGATATTAAAGACTCTGACCATCAGACGTCGCGTCG
TAAAAACACGTCGTGCTCGTCTCCTCTTGACGAATATATTGAAGAAATGA
GTAAGGGAGAGAATCCTGATCGGGATGTTGACTCGAACCCGGCTGCTGTA
CCGTTCTTAAGAAGCATTAGTGCTCCTGAACAAATCGATAAACTTGATGG
CGATGTTTATGATGAAGATTTATCGGAGCTCTATTTACCGAGGCGTCGTG
CAATTTGTCCAAATCTGCCAGTCCCGGCAATGAAGCAACTGAAAACATAC
CTGATTTTAACGAGACTTAAACAATACTGTTTTGTATGATGTTGAGGGTA
AAGAAGATGAAGAATGTGTAAGGAGGTAAACTTTTCGAAGCCACACCTAT
ATTCCTGGAGCttgattttatttgatttgcGATAAATGGCTCCAACTATA
AAATACAATTATTAAGATCTGGGAGAAGACCGTGAGGCAGAAATATCAAT
AAGCATAGATATGATGTGTTTTTAACTGTTACAATTTTCTTATCATATGA
TAAaggaaagattttttgatttgttttaaacaaaagagGAGACAGTTCTA
TGATATGAGGCTGGTTCTGGAAAATAGTGCGATGAAAAATACACTATtat
aaaattttgttgaaaatgtgTATCAATCTTGAAAGACTTGAAGtaagaga
agtaaaaaaatctGTTGTAAAAGCTAACCCAACCCCAAGTATCAAAGTAT
GAACTGTaatataagatttttttatcaGATCGAGGTTTTGGTTTAGATAT
ATATTACAAGACGGAGTTATCTTGATTATAGCTTTCTTATCTCTTGTAAA
GCTTGGTTTCCACTGTGTGATAACATGTGATA Coding sequence (CDS) from alignment at sc0000002:1485497..1490028+ >TCONS_00000486 ID=TCONS_00000486|Name=TCONS_00000486|organism=Clytia hemisphaerica|type=CDS|length=2076bp|location=Sequence derived from alignment at sc0000002:1485497..1490028+ (Clytia hemisphaerica)
ATGATGACTTTTTGTTCGACGACCAACAATCGAAAGAAGAACGCACAATT
CACAATCTCGACTAGTGCTAAAGAAAAGACTGTACCGAATAGTTACGATA
ATAGATCGTTTTTACGCGATTCTTTTACGAACATTTCTGATTACGACAAT
CAGCAACATCGTCAACAACGCTCGCCGATCCTTTCCAAAAATAACCGAAG
TTGTCAATCTGTGTACAACGAAAACATGAGAAATTTGACAAACCTGTCAC
TATCACCGTCACCGTCGGTAAACAGTAAAGACAAAACAATCATCTCAAAT
AATGATGTTACTTTTTCGATCGATGCAACTTCTTCATCAAATACTAAACT
ACCTCCAATTATGGATGATTTATGCCTTAGTAACAATAAAcggaattttg
attggttgaactGTAAATCTACAAATAACATTGTTGTAAACCCATTATCA
ACTTCATCCACACTATCATTAACCGCAGCAACAAATCATCATTCTCCTCT
TaaacaacaatcgaacaatTTAATTAAAACTTTCAGTAACAGTAACAACA
AGATAGACACTAAAGCGCATTTCTCATCGTCGTCAACTATAACACAATCA
CAGATTGGGACAAAATGGAATAAAACTTTCATCAAATCCTCATCACAGTC
TGCTATCTCAACACCAAGAACAATTAATTTAATGTCACCATCAAACAGCG
TGCCTTCTTTTAATTATCGAGGAGGTTTATCGAGCATGTCGATTACTGAG
CGTGGTGGAGATTCGGCTCACAAAGAAGAGACCAGCCGAGGGGGATCGGA
CAGAAAGGTGTCTTCTAGCAAAGGAACACTGGACAAATATTTCTCCTCTG
ATGATATCATTCACGAATACCCTGATGAAAATATACAAAACGGATCATTC
TTAGAAATCGGGCAAGTCTCCGAGGGGGATCGGACAGAAAGGTGTCTTCT
AGCAAAGGAACACTGGACAAATATTTCTCCTCTGATGATATCATTCACGA
ATACCCTGATGAAAATATACAAAACGGATCATTCTTAGATGATGACTTTT
TGTTCGACGACCAACAATCGAAAGAAGAACGCACAATTCACAATCTCGAC
TAGTGCTAAAGAAAAGACTGTACCGAATAGTTACGATAATAGATCGTTTT
TACGCGATTCTTTTACGAACATTTCTGATTACGACAATCAGCAACATCGT
CAACAACGCTCGCCGATCCTTTCCAAAAATAACCGAAGTTGTCAATCTGT
GTACAACGAAAACATGAGAAATTTGACAAACCTGTCACTATCACCGTCAC
CGTCGGTAAACAGTAAAGACAAAACAATCATCTCAAATAATGATGTTACT
TTTTCGATCGATGCAACTTCTTCATCAAATACTAAACTACCTCCAATTAT
GGATGATTTATGCCTTAGTAACAATAAAcggaattttgattggttgaact
GTAAATCTACAAATAACATTGTTGTAAACCCATTATCAACTTCATCCACA
CTATCATTAACCGCAGCAACAAATCATCATTCTCCTCTTaaacaacaatc
gaacaatTTAATTAAAACTTTCAGTAACAGTAACAACAAGATAGACACTA
AAGCGCATTTCTCATCGTCGTCAACTATAACACAATCACAGATTGGGACA
AAATGGAATAAAACTTTCATCAAATCCTCATCACAGTCTGCTATCTCAAC
ACCAAGAACAATTAATTTAATGTCACCATCAAACAGCGTGCCTTCTTTTA
ATTATCGAGGAGGTTTATCGAGCATGTCGATTACTGAGCGTGGTGGAGAT
TCGGCTCACAAAGAAGAGACCAGCCGAGGGGGATCGGACAGAAAGGTGTC
TTCTAGCAAAGGAACACTGGACAAATATTTCTCCTCTGATGATATCATTC
ACGAATACCCTGATGAAAATATACAAAACGGATCATTCTTAGAAATCGGG
CAAGTCTCCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGCAAAGGAACA
CTGGACAAATATTTCTCCTCTGATGATATCATTCACGAATACCCTGATGA
AAATATACAAAACGGATCATTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000486-exon-sc0000002-1491911889:1485497..1487780 | TCONS_00000486-exon-sc0000002-1491911889:1485497..1487780 | Clytia hemisphaerica | exon |
| TCONS_00000486-exon-sc0000002-1510915933:1485497..1487780 | TCONS_00000486-exon-sc0000002-1510915933:1485497..1487780 | Clytia hemisphaerica | exon |
| TCONS_00000486-exon-sc0000002-1575043694:1485497..1487780 | TCONS_00000486-exon-sc0000002-1575043694:1485497..1487780 | Clytia hemisphaerica | exon |
| TCONS_00000486-exon-sc0000002-1491911889:1488627..1490028 | TCONS_00000486-exon-sc0000002-1491911889:1488627..1490028 | Clytia hemisphaerica | exon |
| TCONS_00000486-exon-sc0000002-1510915933:1488627..1490028 | TCONS_00000486-exon-sc0000002-1510915933:1488627..1490028 | Clytia hemisphaerica | exon |
| TCONS_00000486-exon-sc0000002-1575043694:1488627..1490028 | TCONS_00000486-exon-sc0000002-1575043694:1488627..1490028 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1485497..1490028 + |
Blast
The following BLAST results are available for this feature:
|
