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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000485 ID=TCONS_00000485|Name=TCONS_00000485|organism=Clytia hemisphaerica|type=transcript|length=4913bp
GATACTTTGGAGAAAGAACGAAAAGGGAGTCGAAATTGTACTGCTCCCTT
TTTTTACTTCCAAAACacacaaaataaagaaaatattcttattttctagT
GCGTCTTATGggaataacaaaataaattgttattatttttcataCTGAAT
TATTAAAGAAGGCTTGGTTAGCCCCTTAAAACATTTACACTACTGTAGTG
TCAAAGATTACAAATTATTGAAATTggtgcaaaaatattttttattggtt
tgtttGTTGGTTGGAAGGGCAAAAACCTTCATTGTTATTTTAAACAGGAA
AAAAGTGTGAAGAAAGTTTTAACTCGTTATTTCCTTGATAAAGGTGAAAA
AGAGGtggagagagagagaaaaaaagactTGAACCAAATATCGATACATT
TGATTTTGGGGTTCATTATCAAAACGCTATAATGATGACTTTTTGTTCGA
CGACCAACAATCGAAAGAAGAACGCACAATTCACAATCTCGACTAGTGCT
AAAGAAAAGACTGTACCGAATAGTTACGATAATAGATCGTTTTTACGCGA
TTCTTTTACGAACATTTCTGATTACGACAATCAGCAACATCGTCAACAAC
GCTCGCCGATCCTTTCCAAAAATAACCGAAGTTGTCAATCTGTGTACAAC
GAAAACATGAGAAATTTGACAAACCTGTCACTATCACCGTCACCGTCGGT
AAACAGTAAAGACAAAACAATCATCTCAAATAATGATGTTACTTTTTCGA
TCGATGCAACTTCTTCATCAAATACTAAACTACCTCCAATTATGGATGAT
TTATGCCTTAGTAACAATAAAcggaattttgattggttgaactGTAAATC
TACAAATAACATTGTTGTAAACCCATTATCAACTTCATCCACACTATCAT
TAACCGCAGCAACAAATCATCATTCTCCTCTTaaacaacaatcgaacaat
TTAATTAAAACTTTCAGTAACAGTAACAACAAGATAGACACTAAAGCGCA
TTTCTCATCGTCGTCAACTATAACACAATCACAGATTGGGACAAAATGGA
ATAAAACTTTCATCAAATCCTCATCACAGTCTGCTATCTCAACACCAAGA
ACAATTAATTTAATGTCACCATCAAACAGCGTGCCTTCTTTTAATTATCG
AGGAGGTTTATCGAGCATGTCGATTTCTGAACGTGGTGGAGATTCGGGTC
ACAAAGAAGAGACCAGCCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGC
AAAGGAACACTGGACAAATATTTCTCCTCTGATGATATCANTATTTCCTT
GATAAAGGTGAAAAAGAGGtggagagagagagaaaaaaagactTGAACCA
AATATCGATACATTTGATTTTGGGGTTCATTATCAAAACGCTATAATGAT
GACTTTTTGTTCGACGACCAACAATCGAAAGAAGAACGCACAATTCACAA
TCTCGACTAGTGCTAAAGAAAAGACTGTACCGAATAGTTACGATAATAGA
TCGTTTTTACGCGATTCTTTTACGAACATTTCTGATTACGACAATCAGCA
ACATCGTCAACAACGCTCGCCGATCCTTTCCAAAAATAACCGAAGTTGTC
AATCTGTGTACAACGAAAACATGAGAAATTTGACAAACCTGTCACTATCA
CCGTCACCGTCGGTAAACAGTAAAGACAAAACAATCATCTCAAATAATGA
TGTTACTTTTTCGATCGATGCAACTTCTTCATCAAATACTAAACTACCTC
CAATTATGGATGATTTATGCCTTAGTAACAATAAAcggaattttgattgg
ttgaactGTAAATCTACAAATAACATTGTTGTAAACCCATTATCAACTTC
ATCCACACTATCATTAACCGCAGCAACAAATCATCATTCTCCTCTTaaac
aacaatcgaacaatTTAATTAAAACTTTCAGTAACAGTAACAACAAGATA
GACACTAAAGCGCATTTCTCATCGTCGTCAACTATAACACAATCACAGAT
TGGGACAAAATGGAATAAAACTTTCATCAAATCCTCATCACAGTCTGCTA
TCTCAACACCAAGAACAATTAATTTAATGTCACCATCAAACAGCGTGCCT
TCTTTTAATTATCGAGGAGGTTTATCGAGCATGTCGATTACTGAGCGTGG
TGGAGATTCGGCTCACAAAGAAGAGACCAGCCGAGGGGGATCGGACAGAA
AGGTGTCTTCTAGCAAAGGAACACTGGACAAATATTTCTCCTCTGATGAT
ATCATTCACGAATACCCTGATGAAAATATACAAAACGGATCATTCTTAGA
AATCGGGCAAGTCTGCGAGGAGGAGAGCTCCACCGATAATGACTTTATAG
CGCCGCTTGAACGGCCTATCGGTGGTTTAAAACGCTCATGTACGAATGAT
GAACGTATGATGACCTTGAGAGAGATCCCGTTACAACGCTGCCAAAGTAT
TGATAGCACAAAAGGTCTTCAAAAACAAATAGATGAACAGGCTCGCTTCT
TTTCAGAGCAGACAAGCCTTCGACCTCGTCAACGCAAAACATCATCTAAT
GAGAAACCTCAACAAACAAACACTAATACAGCGNTGTGTACAACGAAAAC
ATGAGAAATTTGACAAACCTGTCACTATCACCGTCACCGTCGGTAAACAG
TAAAGACAAAACAATCATCTCAAATAATGATGTTACTTTTTCGATCGATG
CAACTTCTTCATCAAATACTAAACTACCTCCAATTATGGATGATTTATGC
CTTAGTAACAATAAAcggaattttgattggttgaactGTAAATCTACAAA
TAACATTGTTGTAAACCCATTATCAACTTCATCCACACTATCATTAACCG
CAGCAACAAATCATCATTCTCCTCTTaaacaacaatcgaacaatTTAATT
AAAACTTTCAGTAACAGTAACAACAAGATAGACACTAAAGCGCATTTCTC
ATCGTCGTCAACTATAACACAATCACAGATTGGGACAAAATGGAATAAAA
CTTTCATCAAATCCTCATCACAGTCTGCTATCTCAACACCAAGAACAATT
AATTTAATGTCACCATCAAACAGCGTGCCTTCTTTTAATTATCGAGGAGG
TTTATCGAGCATGTCGATTACTGAGCGTGGTGGAGATTCGGCTCACAAAG
AAGAGACCAGCCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGCAAAGGA
ACACTGGACAAATATTTCTCCTCTGATGATATCATTCACGAATACCCTGA
TGAAAATATACAAAACGGATCATTCTTAGAAATCGGGCAAGTCTGCGAGG
AGGAGAGCTCCACCGATAATGACTTTATAGCGCCGCTTGAACGGCCTATC
GGTGGTTTAAAACGCTCATGTACGAATGATGAACGTATGATGACCTTGAG
AGAGATCCCGTTACAACGCTGCCAAAGTATTGATAGCACAAAAGGTCTTC
AAAAACAAATAGATGAACAGGCTCGCTTCTTTTCAGAGCAGACAAGCCTT
CGACCTCGTCAACGCAAAACATCATCTAATGAGAAACCTCAACAAACAAA
CACTAATACAGCGGTAACAAAAAGCCGTAAAAAATTACTAAGACGTTCTA
TGTCGActggtttttcgaaaataaaactCATCAAATCAAGCATTTCATTC
ACAAAAAGTCATCAGCGTTTTACGGATGAGGAACTAAACAGCGTCGATAT
TAAAGACTCTGACCATCAGACGTCGCGTCGTAAAAACACGTCGTGCTCGT
CTCCTCTTGACGAATATATTGAAGAAATGAGTAAGGGAGAGAATCCTGAT
CGGGATGTTGACTCGAACCCGGCTGCTGTACCGTTCTTAAGAAGCATTAG
TGCTCCTGAACAAATCGATAAACTTGATGGCGATGTTTATGATGAAGATT
TATCGGAGCTCTATTTACCGAGGCGTCGTGCAATTTGTCCAAATCTGCCA
GTCCCGGCAATGAAGCAACTGAAAACATACCTGATTTTAACGAGACTTAA
ACAATACTGTTTTGTATGATGTTGAGGGTAAAGAAGATGAAGAATGTGTA
AGGAGGTAAACTTTTCGAAGCCACACCTATATTCCTGGAGCttgatttta
tttgatttgcGATAAATGGCTCCAACTATAAAATACAATTATTAAGATCT
GGGAGAAGACCGTGAGGCAGAAATATCAATAAGCATAGATATGATGTGTT
TTTAACTGTTACAATTTTCTTATCATATGATAAaggaaagattttttgat
ttgttttaaacaaaagagGAGACAGTTCTATGATATGAGGCTGGTTCTGG
AAAATAGTGCGATGAAAAATACACTATtataaaattttgttgaaaatgtg
TATCAATCTTGAAAGACTTGAAGtaagagaagtaaaaaaatctGTTGTAA
AAGCTAACCCAACCCCAAGTATCAAAGTATGAACTGTaatataagatttt
tttatcaGATCGAGGTTTTGGTTTAGATATATATTACAAGACGGAGTTAT
CTTGATTATAGCTTTCTTATCTCTTGTAAAGCTTGGTTTCCACTGTGTGA
TAACATGTGATAATGTGTGACAGGCAGCCTGTCTGGAACACACTATCACA
AAATAAAATTCTATCTCATAGTGGAAACGTTTAAAAGGAGTTTTTATCAC
GCGTTATCACACTGTGATAACGTGTGATAGTGTGTTCTTGGattgaaatg
aatttcaatCCAAGAACACGAAAATTGTGTGAGATAACGTGTCCCTGGTA
GAAAATCTTGATAAGATCTTACCAAGATCTTTTAAAGAAACTTGGCAAGA
ACTTTGTAGGTTTCTTCTCAAGATCTGTGCAAAGAACTTTAAAGATCTTG
ACAAGATCTTGACACGATCGTttaagatctttaaagatctttaagGATTC
TTGAAGGTTTAAG Run BLAST on NCBI transcript from alignment at sc0000002:1485467..1490379+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000485 ID=TCONS_00000485|Name=TCONS_00000485|organism=Clytia hemisphaerica|type=transcript|length=4913bp|location=Sequence derived from alignment at sc0000002:1485467..1490379+ (Clytia hemisphaerica)
GATACTTTGGAGAAAGAACGAAAAGGGAGTCGAAATTGTACTGCTCCCTT
TTTTTACTTCCAAAACacacaaaataaagaaaatattcttattttctagT
GCGTCTTATGggaataacaaaataaattgttattatttttcataCTGAAT
TATTAAAGAAGGCTTGGTTAGCCCCTTAAAACATTTACACTACTGTAGTG
TCAAAGATTACAAATTATTGAAATTggtgcaaaaatattttttattggtt
tgtttGTTGGTTGGAAGGGCAAAAACCTTCATTGTTATTTTAAACAGGAA
AAAAGTGTGAAGAAAGTTTTAACTCGTTATTTCCTTGATAAAGGTGAAAA
AGAGGtggagagagagagaaaaaaagactTGAACCAAATATCGATACATT
TGATTTTGGGGTTCATTATCAAAACGCTATAATGATGACTTTTTGTTCGA
CGACCAACAATCGAAAGAAGAACGCACAATTCACAATCTCGACTAGTGCT
AAAGAAAAGACTGTACCGAATAGTTACGATAATAGATCGTTTTTACGCGA
TTCTTTTACGAACATTTCTGATTACGACAATCAGCAACATCGTCAACAAC
GCTCGCCGATCCTTTCCAAAAATAACCGAAGTTGTCAATCTGTGTACAAC
GAAAACATGAGAAATTTGACAAACCTGTCACTATCACCGTCACCGTCGGT
AAACAGTAAAGACAAAACAATCATCTCAAATAATGATGTTACTTTTTCGA
TCGATGCAACTTCTTCATCAAATACTAAACTACCTCCAATTATGGATGAT
TTATGCCTTAGTAACAATAAAcggaattttgattggttgaactGTAAATC
TACAAATAACATTGTTGTAAACCCATTATCAACTTCATCCACACTATCAT
TAACCGCAGCAACAAATCATCATTCTCCTCTTaaacaacaatcgaacaat
TTAATTAAAACTTTCAGTAACAGTAACAACAAGATAGACACTAAAGCGCA
TTTCTCATCGTCGTCAACTATAACACAATCACAGATTGGGACAAAATGGA
ATAAAACTTTCATCAAATCCTCATCACAGTCTGCTATCTCAACACCAAGA
ACAATTAATTTAATGTCACCATCAAACAGCGTGCCTTCTTTTAATTATCG
AGGAGGTTTATCGAGCATGTCGATTTCTGAACGTGGTGGAGATTCGGGTC
ACAAAGAAGAGACCAGCCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGC
AAAGGAACACTGGACAAATATTTCTCCTCTGATGATATCANTATTTCCTT
GATAAAGGTGAAAAAGAGGtggagagagagagaaaaaaagactTGAACCA
AATATCGATACATTTGATTTTGGGGTTCATTATCAAAACGCTATAATGAT
GACTTTTTGTTCGACGACCAACAATCGAAAGAAGAACGCACAATTCACAA
TCTCGACTAGTGCTAAAGAAAAGACTGTACCGAATAGTTACGATAATAGA
TCGTTTTTACGCGATTCTTTTACGAACATTTCTGATTACGACAATCAGCA
ACATCGTCAACAACGCTCGCCGATCCTTTCCAAAAATAACCGAAGTTGTC
AATCTGTGTACAACGAAAACATGAGAAATTTGACAAACCTGTCACTATCA
CCGTCACCGTCGGTAAACAGTAAAGACAAAACAATCATCTCAAATAATGA
TGTTACTTTTTCGATCGATGCAACTTCTTCATCAAATACTAAACTACCTC
CAATTATGGATGATTTATGCCTTAGTAACAATAAAcggaattttgattgg
ttgaactGTAAATCTACAAATAACATTGTTGTAAACCCATTATCAACTTC
ATCCACACTATCATTAACCGCAGCAACAAATCATCATTCTCCTCTTaaac
aacaatcgaacaatTTAATTAAAACTTTCAGTAACAGTAACAACAAGATA
GACACTAAAGCGCATTTCTCATCGTCGTCAACTATAACACAATCACAGAT
TGGGACAAAATGGAATAAAACTTTCATCAAATCCTCATCACAGTCTGCTA
TCTCAACACCAAGAACAATTAATTTAATGTCACCATCAAACAGCGTGCCT
TCTTTTAATTATCGAGGAGGTTTATCGAGCATGTCGATTACTGAGCGTGG
TGGAGATTCGGCTCACAAAGAAGAGACCAGCCGAGGGGGATCGGACAGAA
AGGTGTCTTCTAGCAAAGGAACACTGGACAAATATTTCTCCTCTGATGAT
ATCATTCACGAATACCCTGATGAAAATATACAAAACGGATCATTCTTAGA
AATCGGGCAAGTCTGCGAGGAGGAGAGCTCCACCGATAATGACTTTATAG
CGCCGCTTGAACGGCCTATCGGTGGTTTAAAACGCTCATGTACGAATGAT
GAACGTATGATGACCTTGAGAGAGATCCCGTTACAACGCTGCCAAAGTAT
TGATAGCACAAAAGGTCTTCAAAAACAAATAGATGAACAGGCTCGCTTCT
TTTCAGAGCAGACAAGCCTTCGACCTCGTCAACGCAAAACATCATCTAAT
GAGAAACCTCAACAAACAAACACTAATACAGCGNTGTGTACAACGAAAAC
ATGAGAAATTTGACAAACCTGTCACTATCACCGTCACCGTCGGTAAACAG
TAAAGACAAAACAATCATCTCAAATAATGATGTTACTTTTTCGATCGATG
CAACTTCTTCATCAAATACTAAACTACCTCCAATTATGGATGATTTATGC
CTTAGTAACAATAAAcggaattttgattggttgaactGTAAATCTACAAA
TAACATTGTTGTAAACCCATTATCAACTTCATCCACACTATCATTAACCG
CAGCAACAAATCATCATTCTCCTCTTaaacaacaatcgaacaatTTAATT
AAAACTTTCAGTAACAGTAACAACAAGATAGACACTAAAGCGCATTTCTC
ATCGTCGTCAACTATAACACAATCACAGATTGGGACAAAATGGAATAAAA
CTTTCATCAAATCCTCATCACAGTCTGCTATCTCAACACCAAGAACAATT
AATTTAATGTCACCATCAAACAGCGTGCCTTCTTTTAATTATCGAGGAGG
TTTATCGAGCATGTCGATTACTGAGCGTGGTGGAGATTCGGCTCACAAAG
AAGAGACCAGCCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGCAAAGGA
ACACTGGACAAATATTTCTCCTCTGATGATATCATTCACGAATACCCTGA
TGAAAATATACAAAACGGATCATTCTTAGAAATCGGGCAAGTCTGCGAGG
AGGAGAGCTCCACCGATAATGACTTTATAGCGCCGCTTGAACGGCCTATC
GGTGGTTTAAAACGCTCATGTACGAATGATGAACGTATGATGACCTTGAG
AGAGATCCCGTTACAACGCTGCCAAAGTATTGATAGCACAAAAGGTCTTC
AAAAACAAATAGATGAACAGGCTCGCTTCTTTTCAGAGCAGACAAGCCTT
CGACCTCGTCAACGCAAAACATCATCTAATGAGAAACCTCAACAAACAAA
CACTAATACAGCGGTAACAAAAAGCCGTAAAAAATTACTAAGACGTTCTA
TGTCGActggtttttcgaaaataaaactCATCAAATCAAGCATTTCATTC
ACAAAAAGTCATCAGCGTTTTACGGATGAGGAACTAAACAGCGTCGATAT
TAAAGACTCTGACCATCAGACGTCGCGTCGTAAAAACACGTCGTGCTCGT
CTCCTCTTGACGAATATATTGAAGAAATGAGTAAGGGAGAGAATCCTGAT
CGGGATGTTGACTCGAACCCGGCTGCTGTACCGTTCTTAAGAAGCATTAG
TGCTCCTGAACAAATCGATAAACTTGATGGCGATGTTTATGATGAAGATT
TATCGGAGCTCTATTTACCGAGGCGTCGTGCAATTTGTCCAAATCTGCCA
GTCCCGGCAATGAAGCAACTGAAAACATACCTGATTTTAACGAGACTTAA
ACAATACTGTTTTGTATGATGTTGAGGGTAAAGAAGATGAAGAATGTGTA
AGGAGGTAAACTTTTCGAAGCCACACCTATATTCCTGGAGCttgatttta
tttgatttgcGATAAATGGCTCCAACTATAAAATACAATTATTAAGATCT
GGGAGAAGACCGTGAGGCAGAAATATCAATAAGCATAGATATGATGTGTT
TTTAACTGTTACAATTTTCTTATCATATGATAAaggaaagattttttgat
ttgttttaaacaaaagagGAGACAGTTCTATGATATGAGGCTGGTTCTGG
AAAATAGTGCGATGAAAAATACACTATtataaaattttgttgaaaatgtg
TATCAATCTTGAAAGACTTGAAGtaagagaagtaaaaaaatctGTTGTAA
AAGCTAACCCAACCCCAAGTATCAAAGTATGAACTGTaatataagatttt
tttatcaGATCGAGGTTTTGGTTTAGATATATATTACAAGACGGAGTTAT
CTTGATTATAGCTTTCTTATCTCTTGTAAAGCTTGGTTTCCACTGTGTGA
TAACATGTGATAATGTGTGACAGGCAGCCTGTCTGGAACACACTATCACA
AAATAAAATTCTATCTCATAGTGGAAACGTTTAAAAGGAGTTTTTATCAC
GCGTTATCACACTGTGATAACGTGTGATAGTGTGTTCTTGGattgaaatg
aatttcaatCCAAGAACACGAAAATTGTGTGAGATAACGTGTCCCTGGTA
GAAAATCTTGATAAGATCTTACCAAGATCTTTTAAAGAAACTTGGCAAGA
ACTTTGTAGGTTTCTTCTCAAGATCTGTGCAAAGAACTTTAAAGATCTTG
ACAAGATCTTGACACGATCGTttaagatctttaaagatctttaagGATTC
TTGAAGGTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000485-exon-sc0000002-1491911889:1485467..1490379 | TCONS_00000485-exon-sc0000002-1491911889:1485467..1490379 | Clytia hemisphaerica | exon |
| TCONS_00000485-exon-sc0000002-1510915933:1485467..1490379 | TCONS_00000485-exon-sc0000002-1510915933:1485467..1490379 | Clytia hemisphaerica | exon |
| TCONS_00000485-exon-sc0000002-1575043694:1485467..1490379 | TCONS_00000485-exon-sc0000002-1575043694:1485467..1490379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1485467..1490379 + |
Blast
The following BLAST results are available for this feature:
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