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TCONS_00000485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000485
Unique NameTCONS_00000485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000485 ID=TCONS_00000485|Name=TCONS_00000485|organism=Clytia hemisphaerica|type=transcript|length=4913bp
GATACTTTGGAGAAAGAACGAAAAGGGAGTCGAAATTGTACTGCTCCCTT
TTTTTACTTCCAAAACacacaaaataaagaaaatattcttattttctagT
GCGTCTTATGggaataacaaaataaattgttattatttttcataCTGAAT
TATTAAAGAAGGCTTGGTTAGCCCCTTAAAACATTTACACTACTGTAGTG
TCAAAGATTACAAATTATTGAAATTggtgcaaaaatattttttattggtt
tgtttGTTGGTTGGAAGGGCAAAAACCTTCATTGTTATTTTAAACAGGAA
AAAAGTGTGAAGAAAGTTTTAACTCGTTATTTCCTTGATAAAGGTGAAAA
AGAGGtggagagagagagaaaaaaagactTGAACCAAATATCGATACATT
TGATTTTGGGGTTCATTATCAAAACGCTATAATGATGACTTTTTGTTCGA
CGACCAACAATCGAAAGAAGAACGCACAATTCACAATCTCGACTAGTGCT
AAAGAAAAGACTGTACCGAATAGTTACGATAATAGATCGTTTTTACGCGA
TTCTTTTACGAACATTTCTGATTACGACAATCAGCAACATCGTCAACAAC
GCTCGCCGATCCTTTCCAAAAATAACCGAAGTTGTCAATCTGTGTACAAC
GAAAACATGAGAAATTTGACAAACCTGTCACTATCACCGTCACCGTCGGT
AAACAGTAAAGACAAAACAATCATCTCAAATAATGATGTTACTTTTTCGA
TCGATGCAACTTCTTCATCAAATACTAAACTACCTCCAATTATGGATGAT
TTATGCCTTAGTAACAATAAAcggaattttgattggttgaactGTAAATC
TACAAATAACATTGTTGTAAACCCATTATCAACTTCATCCACACTATCAT
TAACCGCAGCAACAAATCATCATTCTCCTCTTaaacaacaatcgaacaat
TTAATTAAAACTTTCAGTAACAGTAACAACAAGATAGACACTAAAGCGCA
TTTCTCATCGTCGTCAACTATAACACAATCACAGATTGGGACAAAATGGA
ATAAAACTTTCATCAAATCCTCATCACAGTCTGCTATCTCAACACCAAGA
ACAATTAATTTAATGTCACCATCAAACAGCGTGCCTTCTTTTAATTATCG
AGGAGGTTTATCGAGCATGTCGATTTCTGAACGTGGTGGAGATTCGGGTC
ACAAAGAAGAGACCAGCCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGC
AAAGGAACACTGGACAAATATTTCTCCTCTGATGATATCANTATTTCCTT
GATAAAGGTGAAAAAGAGGtggagagagagagaaaaaaagactTGAACCA
AATATCGATACATTTGATTTTGGGGTTCATTATCAAAACGCTATAATGAT
GACTTTTTGTTCGACGACCAACAATCGAAAGAAGAACGCACAATTCACAA
TCTCGACTAGTGCTAAAGAAAAGACTGTACCGAATAGTTACGATAATAGA
TCGTTTTTACGCGATTCTTTTACGAACATTTCTGATTACGACAATCAGCA
ACATCGTCAACAACGCTCGCCGATCCTTTCCAAAAATAACCGAAGTTGTC
AATCTGTGTACAACGAAAACATGAGAAATTTGACAAACCTGTCACTATCA
CCGTCACCGTCGGTAAACAGTAAAGACAAAACAATCATCTCAAATAATGA
TGTTACTTTTTCGATCGATGCAACTTCTTCATCAAATACTAAACTACCTC
CAATTATGGATGATTTATGCCTTAGTAACAATAAAcggaattttgattgg
ttgaactGTAAATCTACAAATAACATTGTTGTAAACCCATTATCAACTTC
ATCCACACTATCATTAACCGCAGCAACAAATCATCATTCTCCTCTTaaac
aacaatcgaacaatTTAATTAAAACTTTCAGTAACAGTAACAACAAGATA
GACACTAAAGCGCATTTCTCATCGTCGTCAACTATAACACAATCACAGAT
TGGGACAAAATGGAATAAAACTTTCATCAAATCCTCATCACAGTCTGCTA
TCTCAACACCAAGAACAATTAATTTAATGTCACCATCAAACAGCGTGCCT
TCTTTTAATTATCGAGGAGGTTTATCGAGCATGTCGATTACTGAGCGTGG
TGGAGATTCGGCTCACAAAGAAGAGACCAGCCGAGGGGGATCGGACAGAA
AGGTGTCTTCTAGCAAAGGAACACTGGACAAATATTTCTCCTCTGATGAT
ATCATTCACGAATACCCTGATGAAAATATACAAAACGGATCATTCTTAGA
AATCGGGCAAGTCTGCGAGGAGGAGAGCTCCACCGATAATGACTTTATAG
CGCCGCTTGAACGGCCTATCGGTGGTTTAAAACGCTCATGTACGAATGAT
GAACGTATGATGACCTTGAGAGAGATCCCGTTACAACGCTGCCAAAGTAT
TGATAGCACAAAAGGTCTTCAAAAACAAATAGATGAACAGGCTCGCTTCT
TTTCAGAGCAGACAAGCCTTCGACCTCGTCAACGCAAAACATCATCTAAT
GAGAAACCTCAACAAACAAACACTAATACAGCGNTGTGTACAACGAAAAC
ATGAGAAATTTGACAAACCTGTCACTATCACCGTCACCGTCGGTAAACAG
TAAAGACAAAACAATCATCTCAAATAATGATGTTACTTTTTCGATCGATG
CAACTTCTTCATCAAATACTAAACTACCTCCAATTATGGATGATTTATGC
CTTAGTAACAATAAAcggaattttgattggttgaactGTAAATCTACAAA
TAACATTGTTGTAAACCCATTATCAACTTCATCCACACTATCATTAACCG
CAGCAACAAATCATCATTCTCCTCTTaaacaacaatcgaacaatTTAATT
AAAACTTTCAGTAACAGTAACAACAAGATAGACACTAAAGCGCATTTCTC
ATCGTCGTCAACTATAACACAATCACAGATTGGGACAAAATGGAATAAAA
CTTTCATCAAATCCTCATCACAGTCTGCTATCTCAACACCAAGAACAATT
AATTTAATGTCACCATCAAACAGCGTGCCTTCTTTTAATTATCGAGGAGG
TTTATCGAGCATGTCGATTACTGAGCGTGGTGGAGATTCGGCTCACAAAG
AAGAGACCAGCCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGCAAAGGA
ACACTGGACAAATATTTCTCCTCTGATGATATCATTCACGAATACCCTGA
TGAAAATATACAAAACGGATCATTCTTAGAAATCGGGCAAGTCTGCGAGG
AGGAGAGCTCCACCGATAATGACTTTATAGCGCCGCTTGAACGGCCTATC
GGTGGTTTAAAACGCTCATGTACGAATGATGAACGTATGATGACCTTGAG
AGAGATCCCGTTACAACGCTGCCAAAGTATTGATAGCACAAAAGGTCTTC
AAAAACAAATAGATGAACAGGCTCGCTTCTTTTCAGAGCAGACAAGCCTT
CGACCTCGTCAACGCAAAACATCATCTAATGAGAAACCTCAACAAACAAA
CACTAATACAGCGGTAACAAAAAGCCGTAAAAAATTACTAAGACGTTCTA
TGTCGActggtttttcgaaaataaaactCATCAAATCAAGCATTTCATTC
ACAAAAAGTCATCAGCGTTTTACGGATGAGGAACTAAACAGCGTCGATAT
TAAAGACTCTGACCATCAGACGTCGCGTCGTAAAAACACGTCGTGCTCGT
CTCCTCTTGACGAATATATTGAAGAAATGAGTAAGGGAGAGAATCCTGAT
CGGGATGTTGACTCGAACCCGGCTGCTGTACCGTTCTTAAGAAGCATTAG
TGCTCCTGAACAAATCGATAAACTTGATGGCGATGTTTATGATGAAGATT
TATCGGAGCTCTATTTACCGAGGCGTCGTGCAATTTGTCCAAATCTGCCA
GTCCCGGCAATGAAGCAACTGAAAACATACCTGATTTTAACGAGACTTAA
ACAATACTGTTTTGTATGATGTTGAGGGTAAAGAAGATGAAGAATGTGTA
AGGAGGTAAACTTTTCGAAGCCACACCTATATTCCTGGAGCttgatttta
tttgatttgcGATAAATGGCTCCAACTATAAAATACAATTATTAAGATCT
GGGAGAAGACCGTGAGGCAGAAATATCAATAAGCATAGATATGATGTGTT
TTTAACTGTTACAATTTTCTTATCATATGATAAaggaaagattttttgat
ttgttttaaacaaaagagGAGACAGTTCTATGATATGAGGCTGGTTCTGG
AAAATAGTGCGATGAAAAATACACTATtataaaattttgttgaaaatgtg
TATCAATCTTGAAAGACTTGAAGtaagagaagtaaaaaaatctGTTGTAA
AAGCTAACCCAACCCCAAGTATCAAAGTATGAACTGTaatataagatttt
tttatcaGATCGAGGTTTTGGTTTAGATATATATTACAAGACGGAGTTAT
CTTGATTATAGCTTTCTTATCTCTTGTAAAGCTTGGTTTCCACTGTGTGA
TAACATGTGATAATGTGTGACAGGCAGCCTGTCTGGAACACACTATCACA
AAATAAAATTCTATCTCATAGTGGAAACGTTTAAAAGGAGTTTTTATCAC
GCGTTATCACACTGTGATAACGTGTGATAGTGTGTTCTTGGattgaaatg
aatttcaatCCAAGAACACGAAAATTGTGTGAGATAACGTGTCCCTGGTA
GAAAATCTTGATAAGATCTTACCAAGATCTTTTAAAGAAACTTGGCAAGA
ACTTTGTAGGTTTCTTCTCAAGATCTGTGCAAAGAACTTTAAAGATCTTG
ACAAGATCTTGACACGATCGTttaagatctttaaagatctttaagGATTC
TTGAAGGTTTAAG
Run BLAST on NCBI

transcript from alignment at sc0000002:1485467..1490379+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000485 ID=TCONS_00000485|Name=TCONS_00000485|organism=Clytia hemisphaerica|type=transcript|length=4913bp|location=Sequence derived from alignment at sc0000002:1485467..1490379+ (Clytia hemisphaerica)
GATACTTTGGAGAAAGAACGAAAAGGGAGTCGAAATTGTACTGCTCCCTT TTTTTACTTCCAAAACacacaaaataaagaaaatattcttattttctagT GCGTCTTATGggaataacaaaataaattgttattatttttcataCTGAAT TATTAAAGAAGGCTTGGTTAGCCCCTTAAAACATTTACACTACTGTAGTG TCAAAGATTACAAATTATTGAAATTggtgcaaaaatattttttattggtt tgtttGTTGGTTGGAAGGGCAAAAACCTTCATTGTTATTTTAAACAGGAA AAAAGTGTGAAGAAAGTTTTAACTCGTTATTTCCTTGATAAAGGTGAAAA AGAGGtggagagagagagaaaaaaagactTGAACCAAATATCGATACATT TGATTTTGGGGTTCATTATCAAAACGCTATAATGATGACTTTTTGTTCGA CGACCAACAATCGAAAGAAGAACGCACAATTCACAATCTCGACTAGTGCT AAAGAAAAGACTGTACCGAATAGTTACGATAATAGATCGTTTTTACGCGA TTCTTTTACGAACATTTCTGATTACGACAATCAGCAACATCGTCAACAAC GCTCGCCGATCCTTTCCAAAAATAACCGAAGTTGTCAATCTGTGTACAAC GAAAACATGAGAAATTTGACAAACCTGTCACTATCACCGTCACCGTCGGT AAACAGTAAAGACAAAACAATCATCTCAAATAATGATGTTACTTTTTCGA TCGATGCAACTTCTTCATCAAATACTAAACTACCTCCAATTATGGATGAT TTATGCCTTAGTAACAATAAAcggaattttgattggttgaactGTAAATC TACAAATAACATTGTTGTAAACCCATTATCAACTTCATCCACACTATCAT TAACCGCAGCAACAAATCATCATTCTCCTCTTaaacaacaatcgaacaat TTAATTAAAACTTTCAGTAACAGTAACAACAAGATAGACACTAAAGCGCA TTTCTCATCGTCGTCAACTATAACACAATCACAGATTGGGACAAAATGGA ATAAAACTTTCATCAAATCCTCATCACAGTCTGCTATCTCAACACCAAGA ACAATTAATTTAATGTCACCATCAAACAGCGTGCCTTCTTTTAATTATCG AGGAGGTTTATCGAGCATGTCGATTTCTGAACGTGGTGGAGATTCGGGTC ACAAAGAAGAGACCAGCCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGC AAAGGAACACTGGACAAATATTTCTCCTCTGATGATATCANTATTTCCTT GATAAAGGTGAAAAAGAGGtggagagagagagaaaaaaagactTGAACCA AATATCGATACATTTGATTTTGGGGTTCATTATCAAAACGCTATAATGAT GACTTTTTGTTCGACGACCAACAATCGAAAGAAGAACGCACAATTCACAA TCTCGACTAGTGCTAAAGAAAAGACTGTACCGAATAGTTACGATAATAGA TCGTTTTTACGCGATTCTTTTACGAACATTTCTGATTACGACAATCAGCA ACATCGTCAACAACGCTCGCCGATCCTTTCCAAAAATAACCGAAGTTGTC AATCTGTGTACAACGAAAACATGAGAAATTTGACAAACCTGTCACTATCA CCGTCACCGTCGGTAAACAGTAAAGACAAAACAATCATCTCAAATAATGA TGTTACTTTTTCGATCGATGCAACTTCTTCATCAAATACTAAACTACCTC CAATTATGGATGATTTATGCCTTAGTAACAATAAAcggaattttgattgg ttgaactGTAAATCTACAAATAACATTGTTGTAAACCCATTATCAACTTC ATCCACACTATCATTAACCGCAGCAACAAATCATCATTCTCCTCTTaaac aacaatcgaacaatTTAATTAAAACTTTCAGTAACAGTAACAACAAGATA GACACTAAAGCGCATTTCTCATCGTCGTCAACTATAACACAATCACAGAT TGGGACAAAATGGAATAAAACTTTCATCAAATCCTCATCACAGTCTGCTA TCTCAACACCAAGAACAATTAATTTAATGTCACCATCAAACAGCGTGCCT TCTTTTAATTATCGAGGAGGTTTATCGAGCATGTCGATTACTGAGCGTGG TGGAGATTCGGCTCACAAAGAAGAGACCAGCCGAGGGGGATCGGACAGAA AGGTGTCTTCTAGCAAAGGAACACTGGACAAATATTTCTCCTCTGATGAT ATCATTCACGAATACCCTGATGAAAATATACAAAACGGATCATTCTTAGA AATCGGGCAAGTCTGCGAGGAGGAGAGCTCCACCGATAATGACTTTATAG CGCCGCTTGAACGGCCTATCGGTGGTTTAAAACGCTCATGTACGAATGAT GAACGTATGATGACCTTGAGAGAGATCCCGTTACAACGCTGCCAAAGTAT TGATAGCACAAAAGGTCTTCAAAAACAAATAGATGAACAGGCTCGCTTCT TTTCAGAGCAGACAAGCCTTCGACCTCGTCAACGCAAAACATCATCTAAT GAGAAACCTCAACAAACAAACACTAATACAGCGNTGTGTACAACGAAAAC ATGAGAAATTTGACAAACCTGTCACTATCACCGTCACCGTCGGTAAACAG TAAAGACAAAACAATCATCTCAAATAATGATGTTACTTTTTCGATCGATG CAACTTCTTCATCAAATACTAAACTACCTCCAATTATGGATGATTTATGC CTTAGTAACAATAAAcggaattttgattggttgaactGTAAATCTACAAA TAACATTGTTGTAAACCCATTATCAACTTCATCCACACTATCATTAACCG CAGCAACAAATCATCATTCTCCTCTTaaacaacaatcgaacaatTTAATT AAAACTTTCAGTAACAGTAACAACAAGATAGACACTAAAGCGCATTTCTC ATCGTCGTCAACTATAACACAATCACAGATTGGGACAAAATGGAATAAAA CTTTCATCAAATCCTCATCACAGTCTGCTATCTCAACACCAAGAACAATT AATTTAATGTCACCATCAAACAGCGTGCCTTCTTTTAATTATCGAGGAGG TTTATCGAGCATGTCGATTACTGAGCGTGGTGGAGATTCGGCTCACAAAG AAGAGACCAGCCGAGGGGGATCGGACAGAAAGGTGTCTTCTAGCAAAGGA ACACTGGACAAATATTTCTCCTCTGATGATATCATTCACGAATACCCTGA TGAAAATATACAAAACGGATCATTCTTAGAAATCGGGCAAGTCTGCGAGG AGGAGAGCTCCACCGATAATGACTTTATAGCGCCGCTTGAACGGCCTATC GGTGGTTTAAAACGCTCATGTACGAATGATGAACGTATGATGACCTTGAG AGAGATCCCGTTACAACGCTGCCAAAGTATTGATAGCACAAAAGGTCTTC AAAAACAAATAGATGAACAGGCTCGCTTCTTTTCAGAGCAGACAAGCCTT CGACCTCGTCAACGCAAAACATCATCTAATGAGAAACCTCAACAAACAAA CACTAATACAGCGGTAACAAAAAGCCGTAAAAAATTACTAAGACGTTCTA TGTCGActggtttttcgaaaataaaactCATCAAATCAAGCATTTCATTC ACAAAAAGTCATCAGCGTTTTACGGATGAGGAACTAAACAGCGTCGATAT TAAAGACTCTGACCATCAGACGTCGCGTCGTAAAAACACGTCGTGCTCGT CTCCTCTTGACGAATATATTGAAGAAATGAGTAAGGGAGAGAATCCTGAT CGGGATGTTGACTCGAACCCGGCTGCTGTACCGTTCTTAAGAAGCATTAG TGCTCCTGAACAAATCGATAAACTTGATGGCGATGTTTATGATGAAGATT TATCGGAGCTCTATTTACCGAGGCGTCGTGCAATTTGTCCAAATCTGCCA GTCCCGGCAATGAAGCAACTGAAAACATACCTGATTTTAACGAGACTTAA ACAATACTGTTTTGTATGATGTTGAGGGTAAAGAAGATGAAGAATGTGTA AGGAGGTAAACTTTTCGAAGCCACACCTATATTCCTGGAGCttgatttta tttgatttgcGATAAATGGCTCCAACTATAAAATACAATTATTAAGATCT GGGAGAAGACCGTGAGGCAGAAATATCAATAAGCATAGATATGATGTGTT TTTAACTGTTACAATTTTCTTATCATATGATAAaggaaagattttttgat ttgttttaaacaaaagagGAGACAGTTCTATGATATGAGGCTGGTTCTGG AAAATAGTGCGATGAAAAATACACTATtataaaattttgttgaaaatgtg TATCAATCTTGAAAGACTTGAAGtaagagaagtaaaaaaatctGTTGTAA AAGCTAACCCAACCCCAAGTATCAAAGTATGAACTGTaatataagatttt tttatcaGATCGAGGTTTTGGTTTAGATATATATTACAAGACGGAGTTAT CTTGATTATAGCTTTCTTATCTCTTGTAAAGCTTGGTTTCCACTGTGTGA TAACATGTGATAATGTGTGACAGGCAGCCTGTCTGGAACACACTATCACA AAATAAAATTCTATCTCATAGTGGAAACGTTTAAAAGGAGTTTTTATCAC GCGTTATCACACTGTGATAACGTGTGATAGTGTGTTCTTGGattgaaatg aatttcaatCCAAGAACACGAAAATTGTGTGAGATAACGTGTCCCTGGTA GAAAATCTTGATAAGATCTTACCAAGATCTTTTAAAGAAACTTGGCAAGA ACTTTGTAGGTTTCTTCTCAAGATCTGTGCAAAGAACTTTAAAGATCTTG ACAAGATCTTGACACGATCGTttaagatctttaaagatctttaagGATTC TTGAAGGTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000305XLOC_000305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000485-exon-sc0000002-1491911889:1485467..1490379TCONS_00000485-exon-sc0000002-1491911889:1485467..1490379Clytia hemisphaericaexon
TCONS_00000485-exon-sc0000002-1510915933:1485467..1490379TCONS_00000485-exon-sc0000002-1510915933:1485467..1490379Clytia hemisphaericaexon
TCONS_00000485-exon-sc0000002-1575043694:1485467..1490379TCONS_00000485-exon-sc0000002-1575043694:1485467..1490379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1485467..1490379 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0147093 0.017079 0.0501273 0.0779849 0.0642972 0.260217 0.348016 0.219289 0.482889 0.410116 0.500674 0.596128 0.359469 0.328369 0.387629 0.26047 0.645184 0.122946 0.385962 0.531162 0.409077 0.364677 0.331544 0.71401 0.969708 0.203469 0.296187 0.0585975 0.0597016
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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