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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000484 ID=TCONS_00000484|Name=TCONS_00000484|organism=Clytia hemisphaerica|type=transcript|length=3012bp
AAAGATCGCAAAACTTACCATTTTCAAAGTTATCTTCAAAGGTGGTTCAA
ACACTGAAAAGAATCACAATGAATCAATGGAATCTCATCATACATTTTAT
TGCTTTCATTCGTATTGGTTCAGTGTGCACACAAGAGCCACCACCCATTG
ACATGACAAAAAACACAGACTTGAAATGGCAAAGTCGAGATCAAAAAGTT
TGGGTGGGATGGATGAACTTCAAGAAATATGAGAAAACACGGTTTGGTCA
TTCCTCACCCTCGATTGGTGGTTCAAATTTCGATACTGCTGATCTGGATA
CGTGCATGCATCAATGTCGATCTACTGAAAATTGTAACGCTATTCAGATG
AGAATAGATAATTATCCCCTCAAATGTGAACTATTCTCTAGAACACATTA
CGAAGAAGGCGCGGGTCACCTCATAGCCAATCCTGATTATGATTTTTATG
TCAGATGGAACCGCTGCATTTATCCAAACTACTGCTTAAACACTACAAAG
TACGAATGTGTTCCTGATTATCGTACTGACTCAGCAGAATGTAGATGTAA
AGGGACAACAAATGCTGATGGCTTTTGTGTTGTCTAGATACACGGTTTTT
TTAAATAAGAACATGCAAAATTTTTGACGTCTTACGATGTTTTTAAGCCT
AAAAATGTTTTTAAATTGTTCTCAATTTGTGGAAACTCATAAACTTGAAT
ACACGCTTTTTTATATAAGAATACACTTTATAAGAATGTCCATGACGAAA
ATGGCCAAAAAATAAGAATATGCTAAGAATATCACCATCATAGAATTTTG
CTAAtcaagctaagaatgccatttttagaccattttaaattataaattgt
caattaggatctcaacctaagaatgttgtaagaatatcttaggatgattt
tcccaaaagaGTTAAGCAtatcatgatgaaatggattaacaacattcttg
taaaaaaaagcgtgtacttccctaactcgaacaagttttagtGTCCCTTC
AGTTAATAGTTGCCTTATTAATCTTACTtcataaattgaaattttaatct
TTTGTGTTGTTCCCCGTGAAGAGTATGATATGCAATCTCCtgagaaaaaa
aactaactaaAAATGTTCGTTATGTTTTGACCATTGATGCCTAGAGTTTG
TAATAACAAGTTAGAACATTTTGAGGAATTGTGGACTCTAAGATACCCGT
TTTCTTAGGCAAACCGTGAAAAGAAGAAACAtattataaacattttttag
cttaaaactcaaaaagttaagaacatccaaatgattcaaaagattttaga
tgttcttataaagaaaacgtgtatacaAGCTATGTGGCGGCACGAAAAGG
TTTTCTGGTTGATGGGATGAAGCATTTTTCACCAACTTCAAGAACTTTTC
TCTTGTCCTCATTTCTAGCCTGAATATTCAGGTtgtaaacttttttcata
tttgtgATGTTTTTGGTTTATCAGAAGAAAGTGAAAGCGTACTTTGTTAA
TTCTAATATCTCGCGAAGTTGAAAATTTGCCGACCTTGGGTTTACAACAC
TCTAAACGGAACAGCCTGTAATTAgcagaaatatcaaaataagaaaatca
ttTAGAGCTTGGTTATCCCATGAACATAtgaacgactggacatctatctt
ttattgtctctttgaagcgagtttcgttgccgcctgtatttcaaaattgg
tatgaaaaatccgacaatattccgtcataattttatttctttaaattatt
taggtaaaaggattgatagagcttgaacattactcctaatgcacaaaaaa
ttattctaaatttttttcacaagtttgcaatatattttatcagcattttt
caactctgaaatgcagaatttcaactgcgtgtatacttttgaatcccttt
tgtcactccaataaattttttgatgacttgaaaaaaatagcttgctaaag
ttgagagcctgtgtcataagaataccaaaattagaatgtgacactctcta
aaattattcgacacttttatatcaaaatttagaaatattagtcgcagttt
tgacaagctgacgattattatgcctctgttatctttgctatgatatagat
aaaagacttgagaagagtagaacaacagagacttttgtcgaagttttgac
gttgttagcaaggtattcccgagtggtatatcatcaaaatttattgtttc
attttatgcttttaacgaggcggcaacgaagctagcagccctttctacaa
aaagacaaaggagatggatgtccagtcgtttatatttTCATGGTTATCCA
GGCTACCTCATTTCTTTACAGTAAAACTTTTGACCACTTATGTAACATTT
AGTGAAGTAATATAATTTCTTTCCATGAAAtatttgaggggaaaattATT
GGTCGGCAAAGAAGAAACAGTCCTAGCGGTTTATTCAAACCCGTTTTATT
TGCgtcttttgttgttgttttatcaAATGTActatttcttgatttttcag
TATTTCTAATTTTTGCACTGTTTTTATTACGATTTTAGGGGACATAAATT
TTGCCAGAGCCGCAAAAGTCACATTCAAAAATTAGTTTCAGCGAGCCAAA
AttagaagatttttttaaacgttttattaaaactttttttaggcAATTTT
GAATTTGTAAGGTATTCTTTTTGTGACATACATCTATCAAATGTTATCGT
TTCTTTGATTCCTGTATCATTAGACCTGGATTGCCATGTCGCATTTCACC
CTGTTTTACCACCCctataatcaaaattttaactattattaaaattattg
taaaatataTACTATttataatcatttttcacttgTTATTTGACGAACAA
TAAATAAATTCGCACTTTATTACACGTATTTCTCAAATCTctgcatgttt
ttttataagaacataaggcttcgatggccaaaatgataggaacaagttaa
gaacattctaaggatttgcagactctagaacatcgaatttcataggaaaa
tatacaaaatca Run BLAST on NCBI transcript from alignment at sc0000002:1473564..1479807+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000484 ID=TCONS_00000484|Name=TCONS_00000484|organism=Clytia hemisphaerica|type=transcript|length=6244bp|location=Sequence derived from alignment at sc0000002:1473564..1479807+ (Clytia hemisphaerica)
AAAGATCGCAAAACTTACCATTTTCAAAGTATGAATTAAACTGCAAATTA
TCTCCAaataaggctcaaaattttcttaaaaatgccattttatggtTTTG
AATGTAATATTACAATGTGTAATTCTATGTTGAATTTCGATCCTGACCTA
AAAgttttaagaatatccatgatgaaatgaaaaaagaaacaccaaatTGT
TATAAAAGAAGCTAAACctggaaattttgtaaattatttatCTAATTTTG
CGGTTACTTTCCATCCAGGTTATCTTCAAAGGTGGTTCAAACACTGAAAA
GAATCACAATGAATCAATGGAATCTCATCATACATTTTATTGCTTTCATT
CGTATTGGTTCAGTGTGCACACAAGAGCCACCACCCATTGACATGACAAA
AAACACAGACTTGAAATGGCAAAGTCGAGATCAAAAAGTTTGGGTGGGAT
GGATGAACTTCAAGAAATATGAGAAAACACGGTTTGGTCATTCCTCACCC
TCGATTGGTGGTTCAAATTTCGAGTAAGTTTTATTTGGGTGATGATTGTA
TGAAGGGTTATTTTGAAGACTAAACAATACATTAGTGAGTTAATCACTGC
GATGAACGAAAAATATTCAGGCTAAcgaattttaagattttcacTAACCC
TATTAAATATTCTGTTCGTGGCGACGAACACACCCCCCGCCCTTATATTT
AACCTCGCTATTGACGATACGAACAGTATTCGACAATATTGTTTGCTGAC
CGTATATCGGGCAAGTTAAGTTCTCACAAATTTAAAACTACCAGATCGAT
CGCATTGGTCGACAGGAAATGACTAAACAAATGACTGAGCATGAAGGGTA
TATGGTGTAGTTTCCAACTAAGTATTACTTTATATCCCCATTCACatgtt
ttatttcatttcttaCTTATAGTACTGCTGATCTGGATACGTGCATGCAT
CAATGTCGATCTACTGAAAATTGTAACGCTATTCAGATGAGAATAGATAA
TTATCCCCTCAAATGTGAACTATTCTCTAGAACACATTACGAAGAAGGCG
CGGGTCACCTCATAGCCAATCCTGATTATGATTTTTATGTCAGATGGGTG
AGTCAAGTTAATACACAACCTTTCAATGTAATGACGTGACCTCAGATTTA
GGGAAAATGTTgtcaaaatttcgtccctggtgggaaaaataccctacaat
ttcagccccactgggaaattgactttgatttcgttcccattcgaaattca
atgtaaaaattgtATTCTAAAACCATTCCCAATGGATTTTTTTTGAACAG
CTTAGAACAAAagtatttttatccccactgtgggaaaaaaaTTAACCGGG
CAGTGAGACAGGTGTGTAAAGATTAAAGATTAAGATAAAGATTAATTGTG
TATTCTTATAGTAAACATAATTTTTCGATGAGTCAAATTAGAGTGTTTGT
TTGTATCTCCATATTAAAATACTGAAATACTATTGCTTAGAATATAAATC
AAATTTATATCGGTCAGTATCATCtctcttttgaaatatttgaaatttcc
tATCAGCAGATTCAAGTAAAATAGCCACGAAAAATGTCGAGTTAtgctct
gattggctgagacaTGTAAAGATTACCTCACTTGAGTGAGTTACGGTACG
TCCAACTTTTCAAAGATCCAATGCAACCCAATTGCACTCATGATGGAGat
acaacctcgtccccgtgtatcccaggctttatttacgttaatgattgacg
ccagagaatattatctagcgctatcagtaagcatcaaaaagctgataata
cgcagggaacaaGTTTGGATGGAGATACTCATTCATACATCAAAAGAAGT
CCAAAGCAGCGTATATACCGATGTACATTAACAAAATTGCTgtgttgaaa
ttattttttttgcactCAGAAAAAGTCATTACCCAAAAACCATGGTTTTT
GACGTCATAATGCGCAATGAtgacaaaatttttgatgacatcaaaaatta
ggatttctgatgacgtcatcaaaaatgttataaatttttctatttgaatc
aatattttggtgaaaatttgaagtgattttgatattcaatttttaatttc
tatgATGTCATCGAATGACGTCAAAAATCATGTTTTTGGGTAATAACTTT
ATTGagtgcaaaaaaattcaatttcaacaCAGCAATTTTATTAATGTACA
TTGGAATACGcttgttttgatgtataaatgagtactcgggtaacttaatg
catttcccaaattattcaaaatctactttttCTTTTCGCCCCAACTCCAG
CCcttaaaccataacaaattatacatttttggaagcgtatttggatagAG
AATATTGGATTTGGTGTGACTTTTTTCTCAGCACAATTAGAGTTTTTTTA
ACAAAacctaattatgacgtcattattcatgacatcataatttaaaaaag
ttgaatatctcaagaactaatgcTCGAAACGTTATGAAATTtagaccaat
gatagaactcatcaagaggaggagaaaagttttcaaaaaaatgaaaatta
gctgatgtcagcattttattgcaaaaattcgaatttctgcaatttctgct
gacgtcatcaattttgggaaatactttAAACCTTTTTTGAATCATCTTAA
TGTGCtctatcactggtccaaatttcataaagttttgatttatatttctt
gagatattgaactttttgtatttatgacgtcatagcaggttttcttaaaa
tatctctaattatactgagaaaaaATTTGAGTAACACCGAATCCGATATT
CTACATCCAATTACGATCccaactagccataactttcattaaacaaatta
agaaaaatctgcgcctcagatttcagaaattactgagaagtacaggtgac
cattttcattattaatattgacatttaagcctgaaaaactcatataaaat
taagagcagcccagccagaatcatatgacttcatggtttttcctataaaa
cgcgtatatctgaagatactgctcttcgtGTGTTATTGTACTAATGttct
aatgtacacgtttagcaacataactgttcgaatactttgagtagagtaat
gaagagcgcttaataactacttgtggtatgaaaagggaatttccaagaaa
agggaatttccttagattcattaactctccagggataagaaaaagacaaa
ctgagatttcaaaatgagtaatcagatcaaaaagaTTCCggtaaagtctt
tttgatgatgataaaacaatagagagaccgtaagataagaatgctaccgt
taagcggaactaaaatactgaaaaacgcgcaaaCGCAAACGCAAAATTAT
GAGATGTTTGCCCAGCTTCCTTATGCGTGAAGCTATGAATGCCATCCTCG
GTCGCTTTAGGCTCCCTGCAGTGGCAAAAATATATAATTTGTTATGGTTT
ATGAACTGGAACTGGGGGCGGAAAAATTAATGCAATTTTGGGACATGCAT
TAAGTTACCTGAGTATCTCTATCATGAGTGGATTGCATTGGAGTTGGAGT
CACCCCAGCATACTTTAGTCATTTAGAAGAAGAAAAAATGTTTATGTGTG
CAATTTTCCGCCAATCAGAGCTTTACTCGACGTTTTTCGTGACTTTTTTA
CATGAATCTAATGATAGGAAATTCGTGTACTTTTTTTTAGAACCGCTGCA
TTTATCCAAACTACTGCTTAAACACTACAAAGTACGAATGTGTTCCTGAT
TATCGTACTGACTCAGCAGAATGTAGATGTAAAGGGACAACAAATGCTGA
TGGCTTTTGTGTTGTCTAGATACACGGTTTTTTTAAATAAGAACATGCAA
AATTTTTGACGTCTTACGATGTTTTTAAGCCTAAAAATGTTTTTAAATTG
TTCTCAATTTGTGGAAACTCATAAACTTGAATACACGCTTTTTTATATAA
GAATACACTTTATAAGAATGTCCATGACGAAAATGGCCAAAAAATAAGAA
TATGCTAAGAATATCACCATCATAGAATTTTGCTAAtcaagctaagaatg
ccatttttagaccattttaaattataaattgtcaattaggatctcaacct
aagaatgttgtaagaatatcttaggatgattttcccaaaagaGTTAAGCA
tatcatgatgaaatggattaacaacattcttgtaaaaaaaagcgtgtact
tccctaactcgaacaagttttagtGTCCCTTCAGTTAATAGTTGCCTTAT
TAATCTTACTtcataaattgaaattttaatctTTTGTGTTGTTCCCCGTG
AAGAGTATGATATGCAATCTCCtgagaaaaaaaactaactaaAAATGTTC
GTTATGTTTTGACCATTGATGCCTAGAGTTTGTAATAACAAGTTAGAACA
TTTTGAGGAATTGTGGACTCTAAGATACCCGTTTTCTTAGGCAAACCGTG
AAAAGAAGAAACAtattataaacattttttagcttaaaactcaaaaagtt
aagaacatccaaatgattcaaaagattttagatgttcttataaagaaaac
gtgtatacaAGCTATGTGGCGGCACGAAAAGGTTTTCTGGTTGATGGGAT
GAAGCATTTTTCACCAACTTCAAGAACTTTTCTCTTGTCCTCATTTCTAG
CCTGAATATTCAGGTtgtaaacttttttcatatttgtgATGTTTTTGGTT
TATCAGAAGAAAGTGAAAGCGTACTTTGTTAATTCTAATATCTCGCGAAG
TTGAAAATTTGCCGACCTTGGGTTTACAACACTCTAAACGGAACAGCCTG
TAATTAgcagaaatatcaaaataagaaaatcattTAGAGCTTGGTTATCC
CATGAACATAtgaacgactggacatctatcttttattgtctctttgaagc
gagtttcgttgccgcctgtatttcaaaattggtatgaaaaatccgacaat
attccgtcataattttatttctttaaattatttaggtaaaaggattgata
gagcttgaacattactcctaatgcacaaaaaattattctaaatttttttc
acaagtttgcaatatattttatcagcatttttcaactctgaaatgcagaa
tttcaactgcgtgtatacttttgaatcccttttgtcactccaataaattt
tttgatgacttgaaaaaaatagcttgctaaagttgagagcctgtgtcata
agaataccaaaattagaatgtgacactctctaaaattattcgacactttt
atatcaaaatttagaaatattagtcgcagttttgacaagctgacgattat
tatgcctctgttatctttgctatgatatagataaaagacttgagaagagt
agaacaacagagacttttgtcgaagttttgacgttgttagcaaggtattc
ccgagtggtatatcatcaaaatttattgtttcattttatgcttttaacga
ggcggcaacgaagctagcagccctttctacaaaaagacaaaggagatgga
tgtccagtcgtttatatttTCATGGTTATCCAGGCTACCTCATTTCTTTA
CAGTAAAACTTTTGACCACTTATGTAACATTTAGTGAAGTAATATAATTT
CTTTCCATGAAAtatttgaggggaaaattATTGGTCGGCAAAGAAGAAAC
AGTCCTAGCGGTTTATTCAAACCCGTTTTATTTGCgtcttttgttgttgt
tttatcaAATGTActatttcttgatttttcagTATTTCTAATTTTTGCAC
TGTTTTTATTACGATTTTAGGGGACATAAATTTTGCCAGAGCCGCAAAAG
TCACATTCAAAAATTAGTTTCAGCGAGCCAAAAttagaagatttttttaa
acgttttattaaaactttttttaggcAATTTTGAATTTGTAAGGTATTCT
TTTTGTGACATACATCTATCAAATGTTATCGTTTCTTTGATTCCTGTATC
ATTAGACCTGGATTGCCATGTCGCATTTCACCCTGTTTTACCACCCctat
aatcaaaattttaactattattaaaattattgtaaaatataTACTATtta
taatcatttttcacttgTTATTTGACGAACAATAAATAAATTCGCACTTT
ATTACACGTATTTCTCAAATCTctgcatgtttttttataagaacataagg
cttcgatggccaaaatgataggaacaagttaagaacattctaaggatttg
cagactctagaacatcgaatttcataggaaaatatacaaaatca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000484-exon-sc0000002-1491911889:1473564..1473591 | TCONS_00000484-exon-sc0000002-1491911889:1473564..1473591 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1510915933:1473564..1473591 | TCONS_00000484-exon-sc0000002-1510915933:1473564..1473591 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1575043694:1473564..1473591 | TCONS_00000484-exon-sc0000002-1575043694:1473564..1473591 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1491911889:1473832..1474086 | TCONS_00000484-exon-sc0000002-1491911889:1473832..1474086 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1510915933:1473832..1474086 | TCONS_00000484-exon-sc0000002-1510915933:1473832..1474086 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1575043694:1473832..1474086 | TCONS_00000484-exon-sc0000002-1575043694:1473832..1474086 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1491911889:1474486..1474660 | TCONS_00000484-exon-sc0000002-1491911889:1474486..1474660 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1510915933:1474486..1474660 | TCONS_00000484-exon-sc0000002-1510915933:1474486..1474660 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1575043694:1474486..1474660 | TCONS_00000484-exon-sc0000002-1575043694:1474486..1474660 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1491911889:1477254..1479807 | TCONS_00000484-exon-sc0000002-1491911889:1477254..1479807 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1510915933:1477254..1479807 | TCONS_00000484-exon-sc0000002-1510915933:1477254..1479807 | Clytia hemisphaerica | exon |
| TCONS_00000484-exon-sc0000002-1575043694:1477254..1479807 | TCONS_00000484-exon-sc0000002-1575043694:1477254..1479807 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1473564..1479807 + |
Blast
The following BLAST results are available for this feature:
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