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TCONS_00000484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000484
Unique NameTCONS_00000484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3012

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000484 ID=TCONS_00000484|Name=TCONS_00000484|organism=Clytia hemisphaerica|type=transcript|length=3012bp
AAAGATCGCAAAACTTACCATTTTCAAAGTTATCTTCAAAGGTGGTTCAA
ACACTGAAAAGAATCACAATGAATCAATGGAATCTCATCATACATTTTAT
TGCTTTCATTCGTATTGGTTCAGTGTGCACACAAGAGCCACCACCCATTG
ACATGACAAAAAACACAGACTTGAAATGGCAAAGTCGAGATCAAAAAGTT
TGGGTGGGATGGATGAACTTCAAGAAATATGAGAAAACACGGTTTGGTCA
TTCCTCACCCTCGATTGGTGGTTCAAATTTCGATACTGCTGATCTGGATA
CGTGCATGCATCAATGTCGATCTACTGAAAATTGTAACGCTATTCAGATG
AGAATAGATAATTATCCCCTCAAATGTGAACTATTCTCTAGAACACATTA
CGAAGAAGGCGCGGGTCACCTCATAGCCAATCCTGATTATGATTTTTATG
TCAGATGGAACCGCTGCATTTATCCAAACTACTGCTTAAACACTACAAAG
TACGAATGTGTTCCTGATTATCGTACTGACTCAGCAGAATGTAGATGTAA
AGGGACAACAAATGCTGATGGCTTTTGTGTTGTCTAGATACACGGTTTTT
TTAAATAAGAACATGCAAAATTTTTGACGTCTTACGATGTTTTTAAGCCT
AAAAATGTTTTTAAATTGTTCTCAATTTGTGGAAACTCATAAACTTGAAT
ACACGCTTTTTTATATAAGAATACACTTTATAAGAATGTCCATGACGAAA
ATGGCCAAAAAATAAGAATATGCTAAGAATATCACCATCATAGAATTTTG
CTAAtcaagctaagaatgccatttttagaccattttaaattataaattgt
caattaggatctcaacctaagaatgttgtaagaatatcttaggatgattt
tcccaaaagaGTTAAGCAtatcatgatgaaatggattaacaacattcttg
taaaaaaaagcgtgtacttccctaactcgaacaagttttagtGTCCCTTC
AGTTAATAGTTGCCTTATTAATCTTACTtcataaattgaaattttaatct
TTTGTGTTGTTCCCCGTGAAGAGTATGATATGCAATCTCCtgagaaaaaa
aactaactaaAAATGTTCGTTATGTTTTGACCATTGATGCCTAGAGTTTG
TAATAACAAGTTAGAACATTTTGAGGAATTGTGGACTCTAAGATACCCGT
TTTCTTAGGCAAACCGTGAAAAGAAGAAACAtattataaacattttttag
cttaaaactcaaaaagttaagaacatccaaatgattcaaaagattttaga
tgttcttataaagaaaacgtgtatacaAGCTATGTGGCGGCACGAAAAGG
TTTTCTGGTTGATGGGATGAAGCATTTTTCACCAACTTCAAGAACTTTTC
TCTTGTCCTCATTTCTAGCCTGAATATTCAGGTtgtaaacttttttcata
tttgtgATGTTTTTGGTTTATCAGAAGAAAGTGAAAGCGTACTTTGTTAA
TTCTAATATCTCGCGAAGTTGAAAATTTGCCGACCTTGGGTTTACAACAC
TCTAAACGGAACAGCCTGTAATTAgcagaaatatcaaaataagaaaatca
ttTAGAGCTTGGTTATCCCATGAACATAtgaacgactggacatctatctt
ttattgtctctttgaagcgagtttcgttgccgcctgtatttcaaaattgg
tatgaaaaatccgacaatattccgtcataattttatttctttaaattatt
taggtaaaaggattgatagagcttgaacattactcctaatgcacaaaaaa
ttattctaaatttttttcacaagtttgcaatatattttatcagcattttt
caactctgaaatgcagaatttcaactgcgtgtatacttttgaatcccttt
tgtcactccaataaattttttgatgacttgaaaaaaatagcttgctaaag
ttgagagcctgtgtcataagaataccaaaattagaatgtgacactctcta
aaattattcgacacttttatatcaaaatttagaaatattagtcgcagttt
tgacaagctgacgattattatgcctctgttatctttgctatgatatagat
aaaagacttgagaagagtagaacaacagagacttttgtcgaagttttgac
gttgttagcaaggtattcccgagtggtatatcatcaaaatttattgtttc
attttatgcttttaacgaggcggcaacgaagctagcagccctttctacaa
aaagacaaaggagatggatgtccagtcgtttatatttTCATGGTTATCCA
GGCTACCTCATTTCTTTACAGTAAAACTTTTGACCACTTATGTAACATTT
AGTGAAGTAATATAATTTCTTTCCATGAAAtatttgaggggaaaattATT
GGTCGGCAAAGAAGAAACAGTCCTAGCGGTTTATTCAAACCCGTTTTATT
TGCgtcttttgttgttgttttatcaAATGTActatttcttgatttttcag
TATTTCTAATTTTTGCACTGTTTTTATTACGATTTTAGGGGACATAAATT
TTGCCAGAGCCGCAAAAGTCACATTCAAAAATTAGTTTCAGCGAGCCAAA
AttagaagatttttttaaacgttttattaaaactttttttaggcAATTTT
GAATTTGTAAGGTATTCTTTTTGTGACATACATCTATCAAATGTTATCGT
TTCTTTGATTCCTGTATCATTAGACCTGGATTGCCATGTCGCATTTCACC
CTGTTTTACCACCCctataatcaaaattttaactattattaaaattattg
taaaatataTACTATttataatcatttttcacttgTTATTTGACGAACAA
TAAATAAATTCGCACTTTATTACACGTATTTCTCAAATCTctgcatgttt
ttttataagaacataaggcttcgatggccaaaatgataggaacaagttaa
gaacattctaaggatttgcagactctagaacatcgaatttcataggaaaa
tatacaaaatca
Run BLAST on NCBI

transcript from alignment at sc0000002:1473564..1479807+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000484 ID=TCONS_00000484|Name=TCONS_00000484|organism=Clytia hemisphaerica|type=transcript|length=6244bp|location=Sequence derived from alignment at sc0000002:1473564..1479807+ (Clytia hemisphaerica)
AAAGATCGCAAAACTTACCATTTTCAAAGTATGAATTAAACTGCAAATTA TCTCCAaataaggctcaaaattttcttaaaaatgccattttatggtTTTG AATGTAATATTACAATGTGTAATTCTATGTTGAATTTCGATCCTGACCTA AAAgttttaagaatatccatgatgaaatgaaaaaagaaacaccaaatTGT TATAAAAGAAGCTAAACctggaaattttgtaaattatttatCTAATTTTG CGGTTACTTTCCATCCAGGTTATCTTCAAAGGTGGTTCAAACACTGAAAA GAATCACAATGAATCAATGGAATCTCATCATACATTTTATTGCTTTCATT CGTATTGGTTCAGTGTGCACACAAGAGCCACCACCCATTGACATGACAAA AAACACAGACTTGAAATGGCAAAGTCGAGATCAAAAAGTTTGGGTGGGAT GGATGAACTTCAAGAAATATGAGAAAACACGGTTTGGTCATTCCTCACCC TCGATTGGTGGTTCAAATTTCGAGTAAGTTTTATTTGGGTGATGATTGTA TGAAGGGTTATTTTGAAGACTAAACAATACATTAGTGAGTTAATCACTGC GATGAACGAAAAATATTCAGGCTAAcgaattttaagattttcacTAACCC TATTAAATATTCTGTTCGTGGCGACGAACACACCCCCCGCCCTTATATTT AACCTCGCTATTGACGATACGAACAGTATTCGACAATATTGTTTGCTGAC CGTATATCGGGCAAGTTAAGTTCTCACAAATTTAAAACTACCAGATCGAT CGCATTGGTCGACAGGAAATGACTAAACAAATGACTGAGCATGAAGGGTA TATGGTGTAGTTTCCAACTAAGTATTACTTTATATCCCCATTCACatgtt ttatttcatttcttaCTTATAGTACTGCTGATCTGGATACGTGCATGCAT CAATGTCGATCTACTGAAAATTGTAACGCTATTCAGATGAGAATAGATAA TTATCCCCTCAAATGTGAACTATTCTCTAGAACACATTACGAAGAAGGCG CGGGTCACCTCATAGCCAATCCTGATTATGATTTTTATGTCAGATGGGTG AGTCAAGTTAATACACAACCTTTCAATGTAATGACGTGACCTCAGATTTA GGGAAAATGTTgtcaaaatttcgtccctggtgggaaaaataccctacaat ttcagccccactgggaaattgactttgatttcgttcccattcgaaattca atgtaaaaattgtATTCTAAAACCATTCCCAATGGATTTTTTTTGAACAG CTTAGAACAAAagtatttttatccccactgtgggaaaaaaaTTAACCGGG CAGTGAGACAGGTGTGTAAAGATTAAAGATTAAGATAAAGATTAATTGTG TATTCTTATAGTAAACATAATTTTTCGATGAGTCAAATTAGAGTGTTTGT TTGTATCTCCATATTAAAATACTGAAATACTATTGCTTAGAATATAAATC AAATTTATATCGGTCAGTATCATCtctcttttgaaatatttgaaatttcc tATCAGCAGATTCAAGTAAAATAGCCACGAAAAATGTCGAGTTAtgctct gattggctgagacaTGTAAAGATTACCTCACTTGAGTGAGTTACGGTACG TCCAACTTTTCAAAGATCCAATGCAACCCAATTGCACTCATGATGGAGat acaacctcgtccccgtgtatcccaggctttatttacgttaatgattgacg ccagagaatattatctagcgctatcagtaagcatcaaaaagctgataata cgcagggaacaaGTTTGGATGGAGATACTCATTCATACATCAAAAGAAGT CCAAAGCAGCGTATATACCGATGTACATTAACAAAATTGCTgtgttgaaa ttattttttttgcactCAGAAAAAGTCATTACCCAAAAACCATGGTTTTT GACGTCATAATGCGCAATGAtgacaaaatttttgatgacatcaaaaatta ggatttctgatgacgtcatcaaaaatgttataaatttttctatttgaatc aatattttggtgaaaatttgaagtgattttgatattcaatttttaatttc tatgATGTCATCGAATGACGTCAAAAATCATGTTTTTGGGTAATAACTTT ATTGagtgcaaaaaaattcaatttcaacaCAGCAATTTTATTAATGTACA TTGGAATACGcttgttttgatgtataaatgagtactcgggtaacttaatg catttcccaaattattcaaaatctactttttCTTTTCGCCCCAACTCCAG CCcttaaaccataacaaattatacatttttggaagcgtatttggatagAG AATATTGGATTTGGTGTGACTTTTTTCTCAGCACAATTAGAGTTTTTTTA ACAAAacctaattatgacgtcattattcatgacatcataatttaaaaaag ttgaatatctcaagaactaatgcTCGAAACGTTATGAAATTtagaccaat gatagaactcatcaagaggaggagaaaagttttcaaaaaaatgaaaatta gctgatgtcagcattttattgcaaaaattcgaatttctgcaatttctgct gacgtcatcaattttgggaaatactttAAACCTTTTTTGAATCATCTTAA TGTGCtctatcactggtccaaatttcataaagttttgatttatatttctt gagatattgaactttttgtatttatgacgtcatagcaggttttcttaaaa tatctctaattatactgagaaaaaATTTGAGTAACACCGAATCCGATATT CTACATCCAATTACGATCccaactagccataactttcattaaacaaatta agaaaaatctgcgcctcagatttcagaaattactgagaagtacaggtgac cattttcattattaatattgacatttaagcctgaaaaactcatataaaat taagagcagcccagccagaatcatatgacttcatggtttttcctataaaa cgcgtatatctgaagatactgctcttcgtGTGTTATTGTACTAATGttct aatgtacacgtttagcaacataactgttcgaatactttgagtagagtaat gaagagcgcttaataactacttgtggtatgaaaagggaatttccaagaaa agggaatttccttagattcattaactctccagggataagaaaaagacaaa ctgagatttcaaaatgagtaatcagatcaaaaagaTTCCggtaaagtctt tttgatgatgataaaacaatagagagaccgtaagataagaatgctaccgt taagcggaactaaaatactgaaaaacgcgcaaaCGCAAACGCAAAATTAT GAGATGTTTGCCCAGCTTCCTTATGCGTGAAGCTATGAATGCCATCCTCG GTCGCTTTAGGCTCCCTGCAGTGGCAAAAATATATAATTTGTTATGGTTT ATGAACTGGAACTGGGGGCGGAAAAATTAATGCAATTTTGGGACATGCAT TAAGTTACCTGAGTATCTCTATCATGAGTGGATTGCATTGGAGTTGGAGT CACCCCAGCATACTTTAGTCATTTAGAAGAAGAAAAAATGTTTATGTGTG CAATTTTCCGCCAATCAGAGCTTTACTCGACGTTTTTCGTGACTTTTTTA CATGAATCTAATGATAGGAAATTCGTGTACTTTTTTTTAGAACCGCTGCA TTTATCCAAACTACTGCTTAAACACTACAAAGTACGAATGTGTTCCTGAT TATCGTACTGACTCAGCAGAATGTAGATGTAAAGGGACAACAAATGCTGA TGGCTTTTGTGTTGTCTAGATACACGGTTTTTTTAAATAAGAACATGCAA AATTTTTGACGTCTTACGATGTTTTTAAGCCTAAAAATGTTTTTAAATTG TTCTCAATTTGTGGAAACTCATAAACTTGAATACACGCTTTTTTATATAA GAATACACTTTATAAGAATGTCCATGACGAAAATGGCCAAAAAATAAGAA TATGCTAAGAATATCACCATCATAGAATTTTGCTAAtcaagctaagaatg ccatttttagaccattttaaattataaattgtcaattaggatctcaacct aagaatgttgtaagaatatcttaggatgattttcccaaaagaGTTAAGCA tatcatgatgaaatggattaacaacattcttgtaaaaaaaagcgtgtact tccctaactcgaacaagttttagtGTCCCTTCAGTTAATAGTTGCCTTAT TAATCTTACTtcataaattgaaattttaatctTTTGTGTTGTTCCCCGTG AAGAGTATGATATGCAATCTCCtgagaaaaaaaactaactaaAAATGTTC GTTATGTTTTGACCATTGATGCCTAGAGTTTGTAATAACAAGTTAGAACA TTTTGAGGAATTGTGGACTCTAAGATACCCGTTTTCTTAGGCAAACCGTG AAAAGAAGAAACAtattataaacattttttagcttaaaactcaaaaagtt aagaacatccaaatgattcaaaagattttagatgttcttataaagaaaac gtgtatacaAGCTATGTGGCGGCACGAAAAGGTTTTCTGGTTGATGGGAT GAAGCATTTTTCACCAACTTCAAGAACTTTTCTCTTGTCCTCATTTCTAG CCTGAATATTCAGGTtgtaaacttttttcatatttgtgATGTTTTTGGTT TATCAGAAGAAAGTGAAAGCGTACTTTGTTAATTCTAATATCTCGCGAAG TTGAAAATTTGCCGACCTTGGGTTTACAACACTCTAAACGGAACAGCCTG TAATTAgcagaaatatcaaaataagaaaatcattTAGAGCTTGGTTATCC CATGAACATAtgaacgactggacatctatcttttattgtctctttgaagc gagtttcgttgccgcctgtatttcaaaattggtatgaaaaatccgacaat attccgtcataattttatttctttaaattatttaggtaaaaggattgata gagcttgaacattactcctaatgcacaaaaaattattctaaatttttttc acaagtttgcaatatattttatcagcatttttcaactctgaaatgcagaa tttcaactgcgtgtatacttttgaatcccttttgtcactccaataaattt tttgatgacttgaaaaaaatagcttgctaaagttgagagcctgtgtcata agaataccaaaattagaatgtgacactctctaaaattattcgacactttt atatcaaaatttagaaatattagtcgcagttttgacaagctgacgattat tatgcctctgttatctttgctatgatatagataaaagacttgagaagagt agaacaacagagacttttgtcgaagttttgacgttgttagcaaggtattc ccgagtggtatatcatcaaaatttattgtttcattttatgcttttaacga ggcggcaacgaagctagcagccctttctacaaaaagacaaaggagatgga tgtccagtcgtttatatttTCATGGTTATCCAGGCTACCTCATTTCTTTA CAGTAAAACTTTTGACCACTTATGTAACATTTAGTGAAGTAATATAATTT CTTTCCATGAAAtatttgaggggaaaattATTGGTCGGCAAAGAAGAAAC AGTCCTAGCGGTTTATTCAAACCCGTTTTATTTGCgtcttttgttgttgt tttatcaAATGTActatttcttgatttttcagTATTTCTAATTTTTGCAC TGTTTTTATTACGATTTTAGGGGACATAAATTTTGCCAGAGCCGCAAAAG TCACATTCAAAAATTAGTTTCAGCGAGCCAAAAttagaagatttttttaa acgttttattaaaactttttttaggcAATTTTGAATTTGTAAGGTATTCT TTTTGTGACATACATCTATCAAATGTTATCGTTTCTTTGATTCCTGTATC ATTAGACCTGGATTGCCATGTCGCATTTCACCCTGTTTTACCACCCctat aatcaaaattttaactattattaaaattattgtaaaatataTACTATtta taatcatttttcacttgTTATTTGACGAACAATAAATAAATTCGCACTTT ATTACACGTATTTCTCAAATCTctgcatgtttttttataagaacataagg cttcgatggccaaaatgataggaacaagttaagaacattctaaggatttg cagactctagaacatcgaatttcataggaaaatatacaaaatca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000304XLOC_000304Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000484-exon-sc0000002-1491911889:1473564..1473591TCONS_00000484-exon-sc0000002-1491911889:1473564..1473591Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1510915933:1473564..1473591TCONS_00000484-exon-sc0000002-1510915933:1473564..1473591Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1575043694:1473564..1473591TCONS_00000484-exon-sc0000002-1575043694:1473564..1473591Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1491911889:1473832..1474086TCONS_00000484-exon-sc0000002-1491911889:1473832..1474086Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1510915933:1473832..1474086TCONS_00000484-exon-sc0000002-1510915933:1473832..1474086Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1575043694:1473832..1474086TCONS_00000484-exon-sc0000002-1575043694:1473832..1474086Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1491911889:1474486..1474660TCONS_00000484-exon-sc0000002-1491911889:1474486..1474660Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1510915933:1474486..1474660TCONS_00000484-exon-sc0000002-1510915933:1474486..1474660Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1575043694:1474486..1474660TCONS_00000484-exon-sc0000002-1575043694:1474486..1474660Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1491911889:1477254..1479807TCONS_00000484-exon-sc0000002-1491911889:1477254..1479807Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1510915933:1477254..1479807TCONS_00000484-exon-sc0000002-1510915933:1477254..1479807Clytia hemisphaericaexon
TCONS_00000484-exon-sc0000002-1575043694:1477254..1479807TCONS_00000484-exon-sc0000002-1575043694:1477254..1479807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1473564..1479807 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.609407 0.126648 0 0 0 0 3.0826 2.34047 0.483171 4.2323e-09 0 0.0962264 7.84203 7.35221 1.66051 0.92101 0.190181 1.42255 0 0 0.615042 0.581548 0.695757 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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