TCONS_00000469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000469
Unique NameTCONS_00000469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2118

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000469 ID=TCONS_00000469|Name=TCONS_00000469|organism=Clytia hemisphaerica|type=transcript|length=2118bp
TTCTGAGGCCCTGTTTTCTCTTGTCCGAAATAGATAGGTAGCGTCCAGGT
TCACTAGTCAATGGCCACCAGGCTAGGCAAAACAACgttttctttgaaag
aaaaaaacatcaaagtATTAGGTTTCTTTCTTGTTCGAAGATTCTTAGCC
CGAAAATTCCCAGTTCAGGGCAACACATTTCACAGTCTCACTACTTTAAG
ATATTAATATTATATAGTCTTGTGATTTTTTAGAAACAATGGAAGGCTTG
ACTATCTTCGCTTTGGTCCTTGCACTGACCACTACTACCTTGGCAAATCC
AATGGGCTGGGGTGACGAAATGGGCTGGGGTGATACAGTCTACAATGCGG
CGCCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCA
TCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCG
AAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAG
ATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGT
GGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATAT
GACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAAC
CATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATC
CGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTC
AGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAG
GTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGAT
ATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGA
ACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCA
TCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGG
TCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAA
AGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACG
ATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATG
GAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTT
CATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCT
GGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCC
AAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTA
CGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAA
TGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGT
TTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTC
CTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCC
CCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTC
TACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGA
AATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCT
GTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAG
TCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTG
CCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTTGTCAGATACAG
TCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGAC
GAAATGGAAGATGAAAAATCAAACGATGAAGACACACCTGAAGCCATCTG
AAGCCTTGTCGTAGtgactatttgaaaaatttactttaaCTTTAACTTTA
TTGTAGTAATTTCAATTTCACTTAGATCATTTAATAGAAAAATTTGGAAG
GGATTAAATGAAAACTTCAATGTACGATTTTCTGACACCTCCCTGACCAt
ttgtgttttttataaaat
Run BLAST on NCBI

transcript from alignment at sc0000002:1141949..1144066+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000469 ID=TCONS_00000469|Name=TCONS_00000469|organism=Clytia hemisphaerica|type=transcript|length=2118bp|location=Sequence derived from alignment at sc0000002:1141949..1144066+ (Clytia hemisphaerica)
TTCTGAGGCCCTGTTTTCTCTTGTCCGAAATAGATAGGTAGCGTCCAGGT TCACTAGTCAATGGCCACCAGGCTAGGCAAAACAACgttttctttgaaag aaaaaaacatcaaagtATTAGGTTTCTTTCTTGTTCGAAGATTCTTAGCC CGAAAATTCCCAGTTCAGGGCAACACATTTCACAGTCTCACTACTTTAAG ATATTAATATTATATAGTCTTGTGATTTTTTAGAAACAATGGAAGGCTTG ACTATCTTCGCTTTGGTCCTTGCACTGACCACTACTACCTTGGCAAATCC AATGGGCTGGGGTGACGAAATGGGCTGGGGTGATACAGTCTACAATGCGG CGCCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCA TCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCG AAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAG ATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGT GGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATAT GACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAAC CATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATC CGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTC AGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAG GTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGAT ATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGA ACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCA TCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGG TCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAA AGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACG ATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATG GAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTT CATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCT GGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCC AAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTA CGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAA TGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGT TTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTC CTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCC CCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTC TACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGA AATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCT GTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAG TCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTG CCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTTGTCAGATACAG TCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGAC GAAATGGAAGATGAAAAATCAAACGATGAAGACACACCTGAAGCCATCTG AAGCCTTGTCGTAGtgactatttgaaaaatttactttaaCTTTAACTTTA TTGTAGTAATTTCAATTTCACTTAGATCATTTAATAGAAAAATTTGGAAG GGATTAAATGAAAACTTCAATGTACGATTTTCTGACACCTCCCTGACCAt ttgtgttttttataaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000295XLOC_000295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000469-exon-sc0000002-1491911889:1141949..1144066TCONS_00000469-exon-sc0000002-1491911889:1141949..1144066Clytia hemisphaericaexon
TCONS_00000469-exon-sc0000002-1510915933:1141949..1144066TCONS_00000469-exon-sc0000002-1510915933:1141949..1144066Clytia hemisphaericaexon
TCONS_00000469-exon-sc0000002-1575043694:1141949..1144066TCONS_00000469-exon-sc0000002-1575043694:1141949..1144066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1141949..1144066 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0607974 0.0789193 0.314772 0.189511 0 0.0455778 1.86172 4.6478 7.51561 2.70968 9.34522 13.7436 1.40238 1.12118 13.1169 9.85693 0.177022 0.366487 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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