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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000469 ID=TCONS_00000469|Name=TCONS_00000469|organism=Clytia hemisphaerica|type=transcript|length=2118bp
TTCTGAGGCCCTGTTTTCTCTTGTCCGAAATAGATAGGTAGCGTCCAGGT
TCACTAGTCAATGGCCACCAGGCTAGGCAAAACAACgttttctttgaaag
aaaaaaacatcaaagtATTAGGTTTCTTTCTTGTTCGAAGATTCTTAGCC
CGAAAATTCCCAGTTCAGGGCAACACATTTCACAGTCTCACTACTTTAAG
ATATTAATATTATATAGTCTTGTGATTTTTTAGAAACAATGGAAGGCTTG
ACTATCTTCGCTTTGGTCCTTGCACTGACCACTACTACCTTGGCAAATCC
AATGGGCTGGGGTGACGAAATGGGCTGGGGTGATACAGTCTACAATGCGG
CGCCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCA
TCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCG
AAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAG
ATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGT
GGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATAT
GACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAAC
CATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATC
CGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTC
AGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAG
GTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGAT
ATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGA
ACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCA
TCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGG
TCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAA
AGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACG
ATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATG
GAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTT
CATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCT
GGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCC
AAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTA
CGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAA
TGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGT
TTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTC
CTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCC
CCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTC
TACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGA
AATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCT
GTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAG
TCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTG
CCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTTGTCAGATACAG
TCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGAC
GAAATGGAAGATGAAAAATCAAACGATGAAGACACACCTGAAGCCATCTG
AAGCCTTGTCGTAGtgactatttgaaaaatttactttaaCTTTAACTTTA
TTGTAGTAATTTCAATTTCACTTAGATCATTTAATAGAAAAATTTGGAAG
GGATTAAATGAAAACTTCAATGTACGATTTTCTGACACCTCCCTGACCAt
ttgtgttttttataaaat Run BLAST on NCBI transcript from alignment at sc0000002:1141949..1144066+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000469 ID=TCONS_00000469|Name=TCONS_00000469|organism=Clytia hemisphaerica|type=transcript|length=2118bp|location=Sequence derived from alignment at sc0000002:1141949..1144066+ (Clytia hemisphaerica)
TTCTGAGGCCCTGTTTTCTCTTGTCCGAAATAGATAGGTAGCGTCCAGGT
TCACTAGTCAATGGCCACCAGGCTAGGCAAAACAACgttttctttgaaag
aaaaaaacatcaaagtATTAGGTTTCTTTCTTGTTCGAAGATTCTTAGCC
CGAAAATTCCCAGTTCAGGGCAACACATTTCACAGTCTCACTACTTTAAG
ATATTAATATTATATAGTCTTGTGATTTTTTAGAAACAATGGAAGGCTTG
ACTATCTTCGCTTTGGTCCTTGCACTGACCACTACTACCTTGGCAAATCC
AATGGGCTGGGGTGACGAAATGGGCTGGGGTGATACAGTCTACAATGCGG
CGCCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCA
TCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCG
AAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAG
ATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGT
GGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATAT
GACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAAC
CATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATC
CGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTC
AGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAG
GTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGAT
ATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGA
ACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCA
TCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGG
TCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAA
AGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACG
ATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATG
GAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTT
CATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCT
GGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCC
AAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTA
CGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAA
TGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGT
TTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTC
CTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCC
CCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTC
TACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGA
AATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCT
GTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAG
TCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTG
CCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTTGTCAGATACAG
TCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGAC
GAAATGGAAGATGAAAAATCAAACGATGAAGACACACCTGAAGCCATCTG
AAGCCTTGTCGTAGtgactatttgaaaaatttactttaaCTTTAACTTTA
TTGTAGTAATTTCAATTTCACTTAGATCATTTAATAGAAAAATTTGGAAG
GGATTAAATGAAAACTTCAATGTACGATTTTCTGACACCTCCCTGACCAt
ttgtgttttttataaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000469-exon-sc0000002-1491911889:1141949..1144066 | TCONS_00000469-exon-sc0000002-1491911889:1141949..1144066 | Clytia hemisphaerica | exon |
| TCONS_00000469-exon-sc0000002-1510915933:1141949..1144066 | TCONS_00000469-exon-sc0000002-1510915933:1141949..1144066 | Clytia hemisphaerica | exon |
| TCONS_00000469-exon-sc0000002-1575043694:1141949..1144066 | TCONS_00000469-exon-sc0000002-1575043694:1141949..1144066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1141949..1144066 + |
Blast
The following BLAST results are available for this feature:
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