TCONS_00000468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000468
Unique NameTCONS_00000468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000468 ID=TCONS_00000468|Name=TCONS_00000468|organism=Clytia hemisphaerica|type=transcript|length=459bp
AAGTTATATGCATAAATGGGCATCCATTTTTTACAATTCTCATCATTTTT
GGTTTGAAAAACGACGAAATAAGAAACAATGGAAGGCTTGACTATCTTCG
CTTTGGTCCTTGCACTGACCACTACTACCTTGGCAAATCCAATGGGCTGG
GGTGACGAAATGGGCTGGGGTGATACAGTCTACAATGCGGCGCCCTGTTT
CATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAAGATGAAAAATCAA
ACGATGAAGACACACCTGAAGCCATCTGAAGCCTTGTCGTAGtgactatt
tgaaaaatttactttaaCTTTAACTTTATTGTAGTAATTTCAATTTCACT
TAGATCATTTAATAGAAAAATTTGGAAGGGATTAAATGAAAACTTCAATG
TACGATTTTCTGACACCTCCCTGACCAtttgtgttttttataaaatagaa
tCCCACAAC
Run BLAST on NCBI

transcript from alignment at sc0000002:1141790..1144079+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000468 ID=TCONS_00000468|Name=TCONS_00000468|organism=Clytia hemisphaerica|type=transcript|length=2290bp|location=Sequence derived from alignment at sc0000002:1141790..1144079+ (Clytia hemisphaerica)
AAGTTATATGCATAAATGGGCATCCATTTTTTACAATTCTCATCATTTTT
GGTTTGAAAAACGACGAAATAAGGTAAGAGTCTTCTTTTGTAAATTCTCT
TTCAAAAGGAAGACTAGATGAATTGGGCAAAATTATGTATGGGAAATTTC
ATTGTCGGTTTCTGAGGCCCTGTTTTCTCTTGTCCGAAATAGATAGGTAG
CGTCCAGGTTCACTAGTCAATGGCCACCAGGCTAGGCAAAACAACgtttt
ctttgaaagaaaaaaacatcaaagtATTAGGTTTCTTTCTTGTTCGAAGA
TTCTTAGCCCGAAAATTCCCAGTTCAGGGCAACACATTTCACAGTCTCAC
TACTTTAAGATATTAATATTATATAGTCTTGTGATTTTTTAGAAACAATG
GAAGGCTTGACTATCTTCGCTTTGGTCCTTGCACTGACCACTACTACCTT
GGCAAATCCAATGGGCTGGGGTGACGAAATGGGCTGGGGTGATACAGTCT
ACAATGCGGCGCCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAA
ATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTG
TTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGT
CCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGC
CCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGT
CTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACG
AAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCC
TGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAA
GTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACT
GCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACA
GTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGA
CGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACAC
CCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCT
AAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAA
CTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATA
CAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGA
GACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGAC
ACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCAT
CTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGA
AACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGA
TACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTG
GAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATG
ACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACC
ATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCC
GAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCA
GATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGG
TGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATA
TGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAA
CCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCAT
CCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTTGT
CAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAA
GGTGGAGACGAAATGGAAGATGAAAAATCAAACGATGAAGACACACCTGA
AGCCATCTGAAGCCTTGTCGTAGtgactatttgaaaaatttactttaaCT
TTAACTTTATTGTAGTAATTTCAATTTCACTTAGATCATTTAATAGAAAA
ATTTGGAAGGGATTAAATGAAAACTTCAATGTACGATTTTCTGACACCTC
CCTGACCAtttgtgttttttataaaatagaatCCCACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000295XLOC_000295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000468-exon-sc0000002-1491911889:1141790..1141862TCONS_00000468-exon-sc0000002-1491911889:1141790..1141862Clytia hemisphaericaexon
TCONS_00000468-exon-sc0000002-1510915933:1141790..1141862TCONS_00000468-exon-sc0000002-1510915933:1141790..1141862Clytia hemisphaericaexon
TCONS_00000468-exon-sc0000002-1575043694:1141790..1141862TCONS_00000468-exon-sc0000002-1575043694:1141790..1141862Clytia hemisphaericaexon
TCONS_00000468-exon-sc0000002-1491911889:1142182..1142328TCONS_00000468-exon-sc0000002-1491911889:1142182..1142328Clytia hemisphaericaexon
TCONS_00000468-exon-sc0000002-1510915933:1142182..1142328TCONS_00000468-exon-sc0000002-1510915933:1142182..1142328Clytia hemisphaericaexon
TCONS_00000468-exon-sc0000002-1575043694:1142182..1142328TCONS_00000468-exon-sc0000002-1575043694:1142182..1142328Clytia hemisphaericaexon
TCONS_00000468-exon-sc0000002-1491911889:1143841..1144079TCONS_00000468-exon-sc0000002-1491911889:1143841..1144079Clytia hemisphaericaexon
TCONS_00000468-exon-sc0000002-1510915933:1143841..1144079TCONS_00000468-exon-sc0000002-1510915933:1143841..1144079Clytia hemisphaericaexon
TCONS_00000468-exon-sc0000002-1575043694:1143841..1144079TCONS_00000468-exon-sc0000002-1575043694:1143841..1144079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1141790..1144079 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.387217	0.366071	0.488623	0.753684	0	0.105649	54.0985	60.9958	429.881	132.569	302.983	419.146	39.4921	40.4709	717.63	544.705	18.6475	22.324	21.0095	21.8717	0	0	0	0.271399	0	0.113497	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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