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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000468 ID=TCONS_00000468|Name=TCONS_00000468|organism=Clytia hemisphaerica|type=transcript|length=459bp AAGTTATATGCATAAATGGGCATCCATTTTTTACAATTCTCATCATTTTT GGTTTGAAAAACGACGAAATAAGAAACAATGGAAGGCTTGACTATCTTCG CTTTGGTCCTTGCACTGACCACTACTACCTTGGCAAATCCAATGGGCTGG GGTGACGAAATGGGCTGGGGTGATACAGTCTACAATGCGGCGCCCTGTTT CATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAAGATGAAAAATCAA ACGATGAAGACACACCTGAAGCCATCTGAAGCCTTGTCGTAGtgactatt tgaaaaatttactttaaCTTTAACTTTATTGTAGTAATTTCAATTTCACT TAGATCATTTAATAGAAAAATTTGGAAGGGATTAAATGAAAACTTCAATG TACGATTTTCTGACACCTCCCTGACCAtttgtgttttttataaaatagaa tCCCACAAC Run BLAST on NCBI transcript from alignment at sc0000002:1141790..1144079+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000468 ID=TCONS_00000468|Name=TCONS_00000468|organism=Clytia hemisphaerica|type=transcript|length=2290bp|location=Sequence derived from alignment at sc0000002:1141790..1144079+ (Clytia hemisphaerica) AAGTTATATGCATAAATGGGCATCCATTTTTTACAATTCTCATCATTTTT
GGTTTGAAAAACGACGAAATAAGGTAAGAGTCTTCTTTTGTAAATTCTCT
TTCAAAAGGAAGACTAGATGAATTGGGCAAAATTATGTATGGGAAATTTC
ATTGTCGGTTTCTGAGGCCCTGTTTTCTCTTGTCCGAAATAGATAGGTAG
CGTCCAGGTTCACTAGTCAATGGCCACCAGGCTAGGCAAAACAACgtttt
ctttgaaagaaaaaaacatcaaagtATTAGGTTTCTTTCTTGTTCGAAGA
TTCTTAGCCCGAAAATTCCCAGTTCAGGGCAACACATTTCACAGTCTCAC
TACTTTAAGATATTAATATTATATAGTCTTGTGATTTTTTAGAAACAATG
GAAGGCTTGACTATCTTCGCTTTGGTCCTTGCACTGACCACTACTACCTT
GGCAAATCCAATGGGCTGGGGTGACGAAATGGGCTGGGGTGATACAGTCT
ACAATGCGGCGCCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAA
ATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTG
TTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGT
CCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGC
CCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGT
CTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACG
AAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCC
TGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAA
GTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACT
GCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACA
GTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGA
CGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACAC
CCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCT
AAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAA
CTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATA
CAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGA
GACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGAC
ACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCAT
CTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGA
AACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGA
TACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTG
GAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATG
ACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACC
ATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCC
GAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCA
GATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGG
TGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATA
TGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAA
CCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCAT
CCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTTGT
CAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAA
GGTGGAGACGAAATGGAAGATGAAAAATCAAACGATGAAGACACACCTGA
AGCCATCTGAAGCCTTGTCGTAGtgactatttgaaaaatttactttaaCT
TTAACTTTATTGTAGTAATTTCAATTTCACTTAGATCATTTAATAGAAAA
ATTTGGAAGGGATTAAATGAAAACTTCAATGTACGATTTTCTGACACCTC
CCTGACCAtttgtgttttttataaaatagaatCCCACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000468-exon-sc0000002-1491911889:1141790..1141862 | TCONS_00000468-exon-sc0000002-1491911889:1141790..1141862 | Clytia hemisphaerica | exon |
TCONS_00000468-exon-sc0000002-1510915933:1141790..1141862 | TCONS_00000468-exon-sc0000002-1510915933:1141790..1141862 | Clytia hemisphaerica | exon |
TCONS_00000468-exon-sc0000002-1575043694:1141790..1141862 | TCONS_00000468-exon-sc0000002-1575043694:1141790..1141862 | Clytia hemisphaerica | exon |
TCONS_00000468-exon-sc0000002-1491911889:1142182..1142328 | TCONS_00000468-exon-sc0000002-1491911889:1142182..1142328 | Clytia hemisphaerica | exon |
TCONS_00000468-exon-sc0000002-1510915933:1142182..1142328 | TCONS_00000468-exon-sc0000002-1510915933:1142182..1142328 | Clytia hemisphaerica | exon |
TCONS_00000468-exon-sc0000002-1575043694:1142182..1142328 | TCONS_00000468-exon-sc0000002-1575043694:1142182..1142328 | Clytia hemisphaerica | exon |
TCONS_00000468-exon-sc0000002-1491911889:1143841..1144079 | TCONS_00000468-exon-sc0000002-1491911889:1143841..1144079 | Clytia hemisphaerica | exon |
TCONS_00000468-exon-sc0000002-1510915933:1143841..1144079 | TCONS_00000468-exon-sc0000002-1510915933:1143841..1144079 | Clytia hemisphaerica | exon |
TCONS_00000468-exon-sc0000002-1575043694:1143841..1144079 | TCONS_00000468-exon-sc0000002-1575043694:1143841..1144079 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000002 | supercontig | sc0000002:1141790..1144079 + |
Blast
The following BLAST results are available for this feature:
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