TCONS_00000466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000466
Unique NameTCONS_00000466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000466 ID=TCONS_00000466|Name=TCONS_00000466|organism=Clytia hemisphaerica|type=transcript|length=1209bp
ATCGAGATAAAGCTGTTATTCAAACGATCGACTcgatttatattttcttt
ttattagtGAACCGAAAAATAGATTGAAATCATTTATTGAAATGTGGCAA
ATTCAAATCTTGGCAATCTTAGCGATGGCCATCAATCCATCATTTGGAGT
GAAACCAGGAGAATTCAACAAAATCATCGAGCGATACGATGAATGTAGAC
CAGAAAATTATAACGAATTCAACGAAACATGGCGATTTCATGAAAGAGAG
ACttttagatttgtaaaggaaGATGATACCAAGATTACTGCGGGATGGTA
CCGGTTTACGATTGGCTCTTTCCGTATGTTGGAACAAACGGAACTATTCC
AAGATGTCTTAAGAAACAGGGAGACCTTCAAACCGAGCGGTGCACGTCAA
TTCCAATCTTTTGAATTTTCACCCTTTCCACCGAGGTTATTTCAAGGAAC
AACACCTTTGTATGTGTTGGATACTAAACATCCTGACATCCCTGGAGAGT
CTATAGAAAGCACCTCATCAGAGTGTTATTATCGTACTGTTCTGAACGTC
TTTGGACCAAGTCAAGGTATCACCAGACAATGCAAGAGAGATGAGCCTGA
AAGACGATTTTgtacattttatcatttttgtgttGAAGAAAAAGTCAACA
TCACTGTTCGACATTGTGGATCACATTATGTCTACAAGCTGAAACCTGTC
CGTATTTTACAAAGGAATAGGTTTTTTGAGATTCCCAAAAGTGGATTATA
TTGTGGAACAAAGAACGAAACAATCCCTGAGCCTAGAGCGCCTTGTATTT
GCCAAGTCAAGAAGGACGTCCAAGAAATCCTTGATCAAACCAAGTGCCAA
GTTGATTACGAAGGTAACGAtcgaaaagttttaaaatccattacaaaatg
cttaaaaaaagagcgcaaaatgattttaaaagaattgaaaGTATCATCTA
AATGTCATATAAAGCTCAACAAAGCATTATGgaggaaaaaagcaaagaaa
tttacaaaagaGAATCTCAAGTCACAAATCAGTGGATGTGAAAGCGTCAA
GAAAACCTTGATTAAAGGAGTTTATAACAGGTTGGCATTGACACGCAAAT
TCACCACCTCTAAACTACattaaaacctctaattaacggacactctaaaa
ggcggacacctctgattagcggacaatttcattttccccggccgtttcct
agtcaaatc
Run BLAST on NCBI

protein sequence of TCONS_00000466-protein

>TCONS_00000466-protein ID=TCONS_00000466-protein|Name=TCONS_00000466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MWQIQILAILAMAINPSFGVKPGEFNKIIERYDECRPENYNEFNETWRFH
ERETFRFVKEDDTKITAGWYRFTIGSFRMLEQTELFQDVLRNRETFKPSG
ARQFQSFEFSPFPPRLFQGTTPLYVLDTKHPDIPGESIESTSSECYYRTV
LNVFGPSQGITRQCKRDEPERRFCTFYHFCVEEKVNITVRHCGSHYVYKL
KPVRILQRNRFFEIPKSGLYCGTKNETIPEPRAPCICQVKKDVQEILDQT
KCQVDYEGNDRKVLKSITKCLKKERKMILKELKVSSKCHIKLNKALWRKK
AKKFTKENLKSQISGCESVKKTLIKGVYNRLALTRKFTTSKLH
Run BLAST on NCBI

transcript from alignment at sc0000002:1108002..1114219+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000466 ID=TCONS_00000466|Name=TCONS_00000466|organism=Clytia hemisphaerica|type=transcript|length=6218bp|location=Sequence derived from alignment at sc0000002:1108002..1114219+ (Clytia hemisphaerica)
ATCGAGATAAAGCTGTTATTCAAACGATCGACTcgatttatattttcttt ttattagtGAACCGAAAAATAGATTGAAATCATTTATTGAAATGTGGCAA ATTCAAATCTTGGCAATCTTAGCGATGGGTAAGTCAATAATAATTGTAAT TTCTCAGAAATTTATACATATGAGACTTCAATTTTTACCAGAACCTTATA TCAGATACTTGCTTTGGAGTGACACAACATTTAATGCTTTAAAGTTTAAC TAGCTTGGCGTCCTGAGTCGCCATGTTGAATAACTTCctaatttcaaaaa ctttttaatagTGAAGGCTTGTTTattaaaaatatggaaaatatCCTCCT ACTCTCAGGTTCCAAATATACGACCCCCCCCAGCTGTCAaagaccttatt tttgggttttcagaagtacaatttcaaaccccccggcaattaggtccccc cccccccgtttatttaaatctcgaaaaattttcaacccccgtttatttgg aatctAAGAGTACATGAGTTAGAACAACATATTAGAATAATTAAATTAAA GTACAGTGGTGTTTCTTttactcgaacacgcacggggataACACATATTT GTtagagttaaggaaatttcgggTTTTATAATCGGGattataaggtattg ttaatTGAAGggacaaaaaaactaaaaacttgttcgagttaaggagaaat TTCacttatagaggttcgagttaaagagacaaaACTTGCGTTTTTCAATA GCCATCAATCCATCATTTGGAGTGAAACCAGGAGAATTCAACAAAATCAT CGAGCGATACGATGAATGTAGACCAGAAAATTATAACGAATTCAACGAAA CATGGCGATTTCATGAAAGAGAGACttttagatttgtaaaggaaGATGAT ACCAAGATTACTGCGGGATGGTACCGGTTTACGATTGGCTCTTTCCGTAT GTTGGAACAAACGGAACTATTCCAAGATGTCTTAAGAAACAGGGTAAGTA AATACGTATAACATTGAGTCTCAATtttcgggacaagctggagtttttac aagctctcgtttgatttggttggtcgttaacctgtaataaaacaattttg ttactttttctaaagaacgNTTCAAACttcttaaatttgccactactggc gaAAACCCGAatgtttccgtagaaaacattacatcaATAATATCCGAAAA CCCTTCACCAACTTTAGTTAAATTTTCTCATTAATGGAATCGAGATAAAG CTGTTATTCAAACGATCGACTcgatttatattttcttttttttagtgAAC CGAAAAATAGATTGAGATCATTTATTGAAATGTGGCAAATTCAAATCTTG GCAATCTTCGCGATGGGTAAGTCAATACTAATTTTAATTTCTCAGAAATT TATACATACGAGACTTCAATTTTTACCAGAATCTTGTATCAGATACTTGC TTTGGAGTGACACAACATTTAATACTTTAAAGTTTAACTAGCTTGGCGTC CTGAGTCGCCATGTTGAATAACTTCctaatttcaaaaactttttaatagT GAAGGCTTGTTTATTTNccaaatgaccaattagtgaagtatcttataaat actccagctcatccccaattttcagccaaaatatAACAACAAATGAAGAA CAAACGAGGCTCATTATGCTAAAATGACCAAAGAACATAAGAAATTAAAG CTATTTAATGATGATTTAATGATAATGATGATTACACTATGAGCATCATT TTTAGGAACGGCTTAAGAACATCAGCTAAGCCAAGGTTTATTAGTTAAAA AAATCCTTAACGCTTGGAGAGAAAAGTGATCATTGAGTCTAGATAGACTT GATTATAATGTAATTAGAACAAATAAAATTCCCGTTTTAGTTTGAATTAG CGAGGTTCAACTtagcctatctctatcccaacacgcgattgcggtgtcga ggaaaaagccgtgaTCGTCTGGTACAGACAAGGTTCAACTATTTGTACTG AAGATTGATTTCTTTCTTCGTAGGAGACCTTCAAACCGAGCGGTGCACGT CAATTCCAATCTTTTGAATTTTCACCCTTTCCACCGAGGTTATTTCAAGG AACAACACCTTTGTATGTGTTGGATACTAAACATCCTGACATCCCTGGAG GTAAGTTGACGGTAACCTTGTTTATTCAAACTTCCAACAtggaaattaaa tgaaattttaagaaagaagtcaatgaggctcaaaaatgcctaaaaataag aataatttaagaCCAACCATCAGCCTGAAATGGCTGAATTTTTGGCAAAT TAAGGGTCAAAACGGTAAAAATAACTTGAAGTTAGAACAGgaaaagaaca atttgaggctaaaagtatcaaaaaataagaacagccttCACAAATATTTG CtgactcttataaaaaaataagttcCACATCAGAGACATGCATGTCAACA AAACACAACTGATAAGCTTTAATATCAATATTctcatttaacttttttta tgcAGAGTCTATAGAAAGCACCTCATCAGAGTGTTATTATCGTACTGTTC TGAACGTCTTTGGACCAAGTCAAGGTATCACCAGACAATGCAAGAGAGAT GAGCCTGAAAGACGATTTTgtacattttatcatttttgtgttGAAGAAAA AGTCAACATCACTGTTCGACATTGTGGATCACATTATGTCTACAAGCTGA AACCTGTCCGTATTTTACAAAGGAATAGGTTTTTTGAGATTCCCAAAAGT GGATTATATTGTGGAACAAAGAACGAAACAATCCCTGAGCCTAGAGGTAA ATCAATCGTGAATTTtctcttaaaatttttttacaattttccgTAACACA CTaaacagttgacgctctctaatccgATGTTCTATATCTGACGTTCTatc attcgataatattgagAGCTACTGCCAACAAGAAACACTTATAAACGATG CTCTACCTtttgataagctcccttattcggtgaaaatccaattcccctta accctttgagtgccagggtccttttttctaagtttttttttaaaaattgc tagttcaaactttaagggcttatatcttctGATCTAGAATGAATNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNaggacaatctaattcctacgagttcgaccaaaaataacgatttctaaa tcaaactgggcattacaggagggcttcgccctcctatatagcccatgtcg tatatatatacgacatcggcacttaaagggttaaaaatcaaattagagag cgttaaCTGTTAGGATTATAACTTAAGTTTAACTCAAATCTCTCAGTAAT TTCAGTTAAAGTATCGGTCCCTCAATTAAAAGGTCTTGCTTTAGCGACTA TCCAAAATttgaattcttcatttttgccgATTCTTTGGCATCCCCCTTGA AGATTAAAACACAGAGAGAAATCTCACAAATTTTCGCCTGGGTTTTGAGT TGGAGCCAGCCCAAAAAGAAAAGAGCAGATTCAATTTAACACAGTACTAT TCTTTATAGCGCCTTGTATTTGCCAAGTCAAGAAGGACGTCCAAGAAATC CTTGATCAAACCAAGTGCCAAGTTGATTACGAAGGTATTTACTGACATta tctactttaatgggataaattttcatGGTATTaagtttcgcgaatttggg tgtcatccgtgaaattaagtcccgatggaaatttggaaaggtttaatccg caaaattttttaaacaaaactcaaaaaatgtcaaattaacTACTGGCAGC AAAGAAGCACTAATAAAGCgcatttcaacaaccaatatgtAAAATCTGGC AGTAAAAAGAcataaaatcatgaaaatattgtctcccgATAATGCCTtcc acgaaattaaatccccgcgaaaatttatcccattaaagtaagtAAAACCT ATTTCTCGATATTTTAAGGAAAGTTTTCTCAGAAAGTGTCTTCGCACAAG CAAACCTCTTATTaggtaaaaaatattaaattcaagaaaaactgcTATTA CCATAGTaggggggaaatttgttcgtttttttgaggtcgctcgattattt tggtcaaagcacttgttatacatttttggaaaggtaaggggtaggggaat caaaatttcaatgtttccaattttttttcggacactttggtgtgattttc ggacaaatatgacggtctcaggcaaaaatcatagggtcaaaaattaatga aaaTTTTAGCTTGAGAAAACGGAGACCTGTTGTATATTTgtggaaagctc tcaaaaaattaagattagagatatattgcaagtataggtgatttctgtac ctaactcgagatattaacccttgaaaaccgtgtttttcagccagaaacag cttttttgtccagtttttgcgctttttgaagctcatatctcgagttaggt actgaaatcacctatacttgcaatatatctctaatcttaattttttgaga gctttccaaaaatgtacaacaggtctccgttttctcaagctaaaagtttc attaaattttgaccctatgatttttgcctgagaccgtcatatttgtccaa aaatcacaccaaagtgtccgaaaaaaaattggaaacattgaaATTCGGAC TCCTCTATAGTtgtactttccaaaaatgtataacaagtgctttgactaaa aaaatcgagcgattttacaaatttccccctactatatgaCATTTATCTGG AGAGACAGGGGCGGGAATTTTTCACCGGGGAGCTCCACTGGTAAAATGAA ACAGGGATGTGGCAAGTTGGCTtccaatagaaaaaataatgatatgAACA TATGTTTTGTTTACGATTTTAGGTAACGAtcgaaaagttttaaaatccat tacaaaatgcttaaaaaaagagcgcaaaatgattttaaaagaattgaaaG TATCATCTAAATGTCATATAAAGCTCAACAAAGCATTATGgaggaaaaaa gcaaagaaatttacaaaagaGAATCTCAAGTCACAAATCAGTGGATGTGA AAGCGTCAAGAAAACCTTGATTAAAGGAGTTTATAACAGGTTGGCATTGA CACGCAAATTCACCACCTCTAAACTACattaaaacctctaattaacggac actctaaaaggcggacacctctgattagcggacaatttcattttccccgg ccgtttcctagtcaaatc

Coding sequence (CDS) from alignment at sc0000002:1108002..1114219+

>TCONS_00000466 ID=TCONS_00000466|Name=TCONS_00000466|organism=Clytia hemisphaerica|type=CDS|length=6192bp|location=Sequence derived from alignment at sc0000002:1108002..1114219+ (Clytia hemisphaerica)
ATGTGGCAAATTCAAATCTTGGCAATCTTAGCGATGGCCATCAATCCATC
ATTTGGAGTGAAACCAGGAGAATTCAACAAAATCATCGAGCGATACGATG
AATGTAGACCAGAAAATTATAACGAATTCAACGAAACATGGCGATTTCAT
GAAAGAGAGACttttagatttgtaaaggaaGATGATACCAAGATTACTGC
GGGATGGTACCGGTTTACGATTGGCTCTTTCCGTATGTTGGAACAAACGG
AACTATTCCAAGATGTCTTAAGAAACAGGGAGACCTTCAAACCGAGCGGT
GCACGTCAATTCCAATCTTTTGAATTTTCACCCTTTCCACCGAGGTTATT
TCAAGGAACAACACCTTTGTATGTGTTGGATACTAAACATCCTGACATCC
CTGGAGAGTCTATAGAAAGCACCTCATCAGAGTGTTATTATCGTACTGTT
CTGAACGTCTTTGGACCAAGTCAAGGTATCACCAGACAATGCAAGAGAGA
TGAGCCTGAAAGACGATTTTgtacattttatcatttttgtgttGAAGAAA
AAGTCAACATCACTGTTCGACATTGTGGATCACATTATGTCTACAAGCTG
AAACCTGTCCGTATTTTACAAAGGAATAGGTTTTTTGAGATTCCCAAAAG
TGGATTATATTGTGGAACAAAGAACGAAACAATCCCTGAGCCTAGAGCGC
CTTGTATTTGCCAAGTCAAGAAGGACGTCCAAGAAATCCTTGATCAAACC
AAGTGCCAAGTTGATTACGAAGGTAACGAtcgaaaagttttaaaatccat
tacaaaatgcttaaaaaaagagcgcaaaatgattttaaaagaattgaaaG
TATCATCTAAATGTCATATAAAGCTCAACAAAGCATTATGgaggaaaaaa
gcaaagaaatttacaaaagaGAATCTCAAGTCACAAATCAGTGGATGTGA
AAGCGTCAAGAAAACCTTGATTAAAGGAGTTTATAACAGGTTGGCATTGA
CACGCAAATTCACCACCTCTAAACTACattaaATGTGGCAAATTCAAATC
TTGGCAATCTTAGCGATGGCCATCAATCCATCATTTGGAGTGAAACCAGG
AGAATTCAACAAAATCATCGAGCGATACGATGAATGTAGACCAGAAAATT
ATAACGAATTCAACGAAACATGGCGATTTCATGAAAGAGAGACttttaga
tttgtaaaggaaGATGATACCAAGATTACTGCGGGATGGTACCGGTTTAC
GATTGGCTCTTTCCGTATGTTGGAACAAACGGAACTATTCCAAGATGTCT
TAAGAAACAGGGAGACCTTCAAACCGAGCGGTGCACGTCAATTCCAATCT
TTTGAATTTTCACCCTTTCCACCGAGGTTATTTCAAGGAACAACACCTTT
GTATGTGTTGGATACTAAACATCCTGACATCCCTGGAGAGTCTATAGAAA
GCACCTCATCAGAGTGTTATTATCGTACTGTTCTGAACGTCTTTGGACCA
AGTCAAGGTATCACCAGACAATGCAAGAGAGATGAGCCTGAAAGACGATT
TTgtacattttatcatttttgtgttGAAGAAAAAGTCAACATCACTGTTC
GACATTGTGGATCACATTATGTCTACAAGCTGAAACCTGTCCGTATTTTA
CAAAGGAATAGGTTTTTTGAGATTCCCAAAAGTGGATTATATTGTGGAAC
AAAGAACGAAACAATCCCTGAGCCTAGAGCGCCTTGTATTTGCCAAGTCA
AGAAGGACGTCCAAGAAATCCTTGATCAAACCAAGTGCCAAGTTGATTAC
GAAGGTAACGAtcgaaaagttttaaaatccattacaaaatgcttaaaaaa
agagcgcaaaatgattttaaaagaattgaaaGTATCATCTAAATGTCATA
TAAAGCTCAACAAAGCATTATGgaggaaaaaagcaaagaaatttacaaaa
gaGAATCTCAAGTCACAAATCAGTGGATGTGAAAGCGTCAAGAAAACCTT
GATTAAAGGAGTTTATAACAGGTTGGCATTGACACGCAAATTCACCACCT
CTAAACTACattaaATGTGGCAAATTCAAATCTTGGCAATCTTAGCGATG
GCCATCAATCCATCATTTGGAGTGAAACCAGGAGAATTCAACAAAATCAT
CGAGCGATACGATGAATGTAGACCAGAAAATTATAACGAATTCAACGAAA
CATGGCGATTTCATGAAAGAGAGACttttagatttgtaaaggaaGATGAT
ACCAAGATTACTGCGGGATGGTACCGGTTTACGATTGGCTCTTTCCGTAT
GTTGGAACAAACGGAACTATTCCAAGATGTCTTAAGAAACAGGGAGACCT
TCAAACCGAGCGGTGCACGTCAATTCCAATCTTTTGAATTTTCACCCTTT
CCACCGAGGTTATTTCAAGGAACAACACCTTTGTATGTGTTGGATACTAA
ACATCCTGACATCCCTGGAGAGTCTATAGAAAGCACCTCATCAGAGTGTT
ATTATCGTACTGTTCTGAACGTCTTTGGACCAAGTCAAGGTATCACCAGA
CAATGCAAGAGAGATGAGCCTGAAAGACGATTTTgtacattttatcattt
ttgtgttGAAGAAAAAGTCAACATCACTGTTCGACATTGTGGATCACATT
ATGTCTACAAGCTGAAACCTGTCCGTATTTTACAAAGGAATAGGTTTTTT
GAGATTCCCAAAAGTGGATTATATTGTGGAACAAAGAACGAAACAATCCC
TGAGCCTAGAGCGCCTTGTATTTGCCAAGTCAAGAAGGACGTCCAAGAAA
TCCTTGATCAAACCAAGTGCCAAGTTGATTACGAAGGTAACGAtcgaaaa
gttttaaaatccattacaaaatgcttaaaaaaagagcgcaaaatgatttt
aaaagaattgaaaGTATCATCTAAATGTCATATAAAGCTCAACAAAGCAT
TATGgaggaaaaaagcaaagaaatttacaaaagaGAATCTCAAGTCACAA
ATCAGTGGATGTGAAAGCGTCAAGAAAACCTTGATTAAAGGAGTTTATAA
CAGGTTGGCATTGACACGCAAATTCACCACCTCTAAACTACattaaATGT
GGCAAATTCAAATCTTGGCAATCTTAGCGATGGCCATCAATCCATCATTT
GGAGTGAAACCAGGAGAATTCAACAAAATCATCGAGCGATACGATGAATG
TAGACCAGAAAATTATAACGAATTCAACGAAACATGGCGATTTCATGAAA
GAGAGACttttagatttgtaaaggaaGATGATACCAAGATTACTGCGGGA
TGGTACCGGTTTACGATTGGCTCTTTCCGTATGTTGGAACAAACGGAACT
ATTCCAAGATGTCTTAAGAAACAGGGAGACCTTCAAACCGAGCGGTGCAC
GTCAATTCCAATCTTTTGAATTTTCACCCTTTCCACCGAGGTTATTTCAA
GGAACAACACCTTTGTATGTGTTGGATACTAAACATCCTGACATCCCTGG
AGAGTCTATAGAAAGCACCTCATCAGAGTGTTATTATCGTACTGTTCTGA
ACGTCTTTGGACCAAGTCAAGGTATCACCAGACAATGCAAGAGAGATGAG
CCTGAAAGACGATTTTgtacattttatcatttttgtgttGAAGAAAAAGT
CAACATCACTGTTCGACATTGTGGATCACATTATGTCTACAAGCTGAAAC
CTGTCCGTATTTTACAAAGGAATAGGTTTTTTGAGATTCCCAAAAGTGGA
TTATATTGTGGAACAAAGAACGAAACAATCCCTGAGCCTAGAGCGCCTTG
TATTTGCCAAGTCAAGAAGGACGTCCAAGAAATCCTTGATCAAACCAAGT
GCCAAGTTGATTACGAAGGTAACGAtcgaaaagttttaaaatccattaca
aaatgcttaaaaaaagagcgcaaaatgattttaaaagaattgaaaGTATC
ATCTAAATGTCATATAAAGCTCAACAAAGCATTATGgaggaaaaaagcaa
agaaatttacaaaagaGAATCTCAAGTCACAAATCAGTGGATGTGAAAGC
GTCAAGAAAACCTTGATTAAAGGAGTTTATAACAGGTTGGCATTGACACG
CAAATTCACCACCTCTAAACTACattaaATGTGGCAAATTCAAATCTTGG
CAATCTTAGCGATGGCCATCAATCCATCATTTGGAGTGAAACCAGGAGAA
TTCAACAAAATCATCGAGCGATACGATGAATGTAGACCAGAAAATTATAA
CGAATTCAACGAAACATGGCGATTTCATGAAAGAGAGACttttagatttg
taaaggaaGATGATACCAAGATTACTGCGGGATGGTACCGGTTTACGATT
GGCTCTTTCCGTATGTTGGAACAAACGGAACTATTCCAAGATGTCTTAAG
AAACAGGGAGACCTTCAAACCGAGCGGTGCACGTCAATTCCAATCTTTTG
AATTTTCACCCTTTCCACCGAGGTTATTTCAAGGAACAACACCTTTGTAT
GTGTTGGATACTAAACATCCTGACATCCCTGGAGAGTCTATAGAAAGCAC
CTCATCAGAGTGTTATTATCGTACTGTTCTGAACGTCTTTGGACCAAGTC
AAGGTATCACCAGACAATGCAAGAGAGATGAGCCTGAAAGACGATTTTgt
acattttatcatttttgtgttGAAGAAAAAGTCAACATCACTGTTCGACA
TTGTGGATCACATTATGTCTACAAGCTGAAACCTGTCCGTATTTTACAAA
GGAATAGGTTTTTTGAGATTCCCAAAAGTGGATTATATTGTGGAACAAAG
AACGAAACAATCCCTGAGCCTAGAGCGCCTTGTATTTGCCAAGTCAAGAA
GGACGTCCAAGAAATCCTTGATCAAACCAAGTGCCAAGTTGATTACGAAG
GTAACGAtcgaaaagttttaaaatccattacaaaatgcttaaaaaaagag
cgcaaaatgattttaaaagaattgaaaGTATCATCTAAATGTCATATAAA
GCTCAACAAAGCATTATGgaggaaaaaagcaaagaaatttacaaaagaGA
ATCTCAAGTCACAAATCAGTGGATGTGAAAGCGTCAAGAAAACCTTGATT
AAAGGAGTTTATAACAGGTTGGCATTGACACGCAAATTCACCACCTCTAA
ACTACattaaATGTGGCAAATTCAAATCTTGGCAATCTTAGCGATGGCCA
TCAATCCATCATTTGGAGTGAAACCAGGAGAATTCAACAAAATCATCGAG
CGATACGATGAATGTAGACCAGAAAATTATAACGAATTCAACGAAACATG
GCGATTTCATGAAAGAGAGACttttagatttgtaaaggaaGATGATACCA
AGATTACTGCGGGATGGTACCGGTTTACGATTGGCTCTTTCCGTATGTTG
GAACAAACGGAACTATTCCAAGATGTCTTAAGAAACAGGGAGACCTTCAA
ACCGAGCGGTGCACGTCAATTCCAATCTTTTGAATTTTCACCCTTTCCAC
CGAGGTTATTTCAAGGAACAACACCTTTGTATGTGTTGGATACTAAACAT
CCTGACATCCCTGGAGAGTCTATAGAAAGCACCTCATCAGAGTGTTATTA
TCGTACTGTTCTGAACGTCTTTGGACCAAGTCAAGGTATCACCAGACAAT
GCAAGAGAGATGAGCCTGAAAGACGATTTTgtacattttatcatttttgt
gttGAAGAAAAAGTCAACATCACTGTTCGACATTGTGGATCACATTATGT
CTACAAGCTGAAACCTGTCCGTATTTTACAAAGGAATAGGTTTTTTGAGA
TTCCCAAAAGTGGATTATATTGTGGAACAAAGAACGAAACAATCCCTGAG
CCTAGAGCGCCTTGTATTTGCCAAGTCAAGAAGGACGTCCAAGAAATCCT
TGATCAAACCAAGTGCCAAGTTGATTACGAAGGTAACGAtcgaaaagttt
taaaatccattacaaaatgcttaaaaaaagagcgcaaaatgattttaaaa
gaattgaaaGTATCATCTAAATGTCATATAAAGCTCAACAAAGCATTATG
gaggaaaaaagcaaagaaatttacaaaagaGAATCTCAAGTCACAAATCA
GTGGATGTGAAAGCGTCAAGAAAACCTTGATTAAAGGAGTTTATAACAGG
TTGGCATTGACACGCAAATTCACCACCTCTAAACTACattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000294XLOC_000294Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000466-proteinTCONS_00000466-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000466-exon-sc0000002-1491911889:1108002..1108129TCONS_00000466-exon-sc0000002-1491911889:1108002..1108129Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1510915933:1108002..1108129TCONS_00000466-exon-sc0000002-1510915933:1108002..1108129Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1575043694:1108002..1108129TCONS_00000466-exon-sc0000002-1575043694:1108002..1108129Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1491911889:1108753..1108994TCONS_00000466-exon-sc0000002-1491911889:1108753..1108994Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1510915933:1108753..1108994TCONS_00000466-exon-sc0000002-1510915933:1108753..1108994Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1575043694:1108753..1108994TCONS_00000466-exon-sc0000002-1575043694:1108753..1108994Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1491911889:1110025..1110151TCONS_00000466-exon-sc0000002-1491911889:1110025..1110151Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1510915933:1110025..1110151TCONS_00000466-exon-sc0000002-1510915933:1110025..1110151Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1575043694:1110025..1110151TCONS_00000466-exon-sc0000002-1575043694:1110025..1110151Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1491911889:1110507..1110797TCONS_00000466-exon-sc0000002-1491911889:1110507..1110797Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1510915933:1110507..1110797TCONS_00000466-exon-sc0000002-1510915933:1110507..1110797Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1575043694:1110507..1110797TCONS_00000466-exon-sc0000002-1575043694:1110507..1110797Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1491911889:1112561..1112635TCONS_00000466-exon-sc0000002-1491911889:1112561..1112635Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1510915933:1112561..1112635TCONS_00000466-exon-sc0000002-1510915933:1112561..1112635Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1575043694:1112561..1112635TCONS_00000466-exon-sc0000002-1575043694:1112561..1112635Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1491911889:1113874..1114219TCONS_00000466-exon-sc0000002-1491911889:1113874..1114219Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1510915933:1113874..1114219TCONS_00000466-exon-sc0000002-1510915933:1113874..1114219Clytia hemisphaericaexon
TCONS_00000466-exon-sc0000002-1575043694:1113874..1114219TCONS_00000466-exon-sc0000002-1575043694:1113874..1114219Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1108002..1114219 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54432 0.79248 0.977014 0.827752 0.699465 0.860334 0.792918 1.34443 1.28798 3.1754 2.12068 0.832285 0.568753 1.51259 0.425146 0.239865 0.509574 0.412389 0.720179 0.475452 0.518015 0.667306 0.370708 0.785624 1.29742 0.850583 0.733373 1.04528 1.31045 1.49819
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top