XLOC_000294 (gene) - C. hemisphaerica

Overview
NameXLOC_000294
Unique NameXLOC_000294
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000002:1108002..1114219+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000294 ID=XLOC_000294|Name=XLOC_000294|organism=Clytia hemisphaerica|type=gene|length=6218bp|location=Sequence derived from alignment at sc0000002:1108002..1114219+ (Clytia hemisphaerica)
ATCGAGATAAAGCTGTTATTCAAACGATCGACTcgatttatattttcttt
ttattagtGAACCGAAAAATAGATTGAAATCATTTATTGAAATGTGGCAA
ATTCAAATCTTGGCAATCTTAGCGATGGGTAAGTCAATAATAATTGTAAT
TTCTCAGAAATTTATACATATGAGACTTCAATTTTTACCAGAACCTTATA
TCAGATACTTGCTTTGGAGTGACACAACATTTAATGCTTTAAAGTTTAAC
TAGCTTGGCGTCCTGAGTCGCCATGTTGAATAACTTCctaatttcaaaaa
ctttttaatagTGAAGGCTTGTTTattaaaaatatggaaaatatCCTCCT
ACTCTCAGGTTCCAAATATACGACCCCCCCCAGCTGTCAaagaccttatt
tttgggttttcagaagtacaatttcaaaccccccggcaattaggtccccc
cccccccgtttatttaaatctcgaaaaattttcaacccccgtttatttgg
aatctAAGAGTACATGAGTTAGAACAACATATTAGAATAATTAAATTAAA
GTACAGTGGTGTTTCTTttactcgaacacgcacggggataACACATATTT
GTtagagttaaggaaatttcgggTTTTATAATCGGGattataaggtattg
ttaatTGAAGggacaaaaaaactaaaaacttgttcgagttaaggagaaat
TTCacttatagaggttcgagttaaagagacaaaACTTGCGTTTTTCAATA
GCCATCAATCCATCATTTGGAGTGAAACCAGGAGAATTCAACAAAATCAT
CGAGCGATACGATGAATGTAGACCAGAAAATTATAACGAATTCAACGAAA
CATGGCGATTTCATGAAAGAGAGACttttagatttgtaaaggaaGATGAT
ACCAAGATTACTGCGGGATGGTACCGGTTTACGATTGGCTCTTTCCGTAT
GTTGGAACAAACGGAACTATTCCAAGATGTCTTAAGAAACAGGGTAAGTA
AATACGTATAACATTGAGTCTCAATtttcgggacaagctggagtttttac
aagctctcgtttgatttggttggtcgttaacctgtaataaaacaattttg
ttactttttctaaagaacgNTTCAAACttcttaaatttgccactactggc
gaAAACCCGAatgtttccgtagaaaacattacatcaATAATATCCGAAAA
CCCTTCACCAACTTTAGTTAAATTTTCTCATTAATGGAATCGAGATAAAG
CTGTTATTCAAACGATCGACTcgatttatattttcttttttttagtgAAC
CGAAAAATAGATTGAGATCATTTATTGAAATGTGGCAAATTCAAATCTTG
GCAATCTTCGCGATGGGTAAGTCAATACTAATTTTAATTTCTCAGAAATT
TATACATACGAGACTTCAATTTTTACCAGAATCTTGTATCAGATACTTGC
TTTGGAGTGACACAACATTTAATACTTTAAAGTTTAACTAGCTTGGCGTC
CTGAGTCGCCATGTTGAATAACTTCctaatttcaaaaactttttaatagT
GAAGGCTTGTTTATTTNccaaatgaccaattagtgaagtatcttataaat
actccagctcatccccaattttcagccaaaatatAACAACAAATGAAGAA
CAAACGAGGCTCATTATGCTAAAATGACCAAAGAACATAAGAAATTAAAG
CTATTTAATGATGATTTAATGATAATGATGATTACACTATGAGCATCATT
TTTAGGAACGGCTTAAGAACATCAGCTAAGCCAAGGTTTATTAGTTAAAA
AAATCCTTAACGCTTGGAGAGAAAAGTGATCATTGAGTCTAGATAGACTT
GATTATAATGTAATTAGAACAAATAAAATTCCCGTTTTAGTTTGAATTAG
CGAGGTTCAACTtagcctatctctatcccaacacgcgattgcggtgtcga
ggaaaaagccgtgaTCGTCTGGTACAGACAAGGTTCAACTATTTGTACTG
AAGATTGATTTCTTTCTTCGTAGGAGACCTTCAAACCGAGCGGTGCACGT
CAATTCCAATCTTTTGAATTTTCACCCTTTCCACCGAGGTTATTTCAAGG
AACAACACCTTTGTATGTGTTGGATACTAAACATCCTGACATCCCTGGAG
GTAAGTTGACGGTAACCTTGTTTATTCAAACTTCCAACAtggaaattaaa
tgaaattttaagaaagaagtcaatgaggctcaaaaatgcctaaaaataag
aataatttaagaCCAACCATCAGCCTGAAATGGCTGAATTTTTGGCAAAT
TAAGGGTCAAAACGGTAAAAATAACTTGAAGTTAGAACAGgaaaagaaca
atttgaggctaaaagtatcaaaaaataagaacagccttCACAAATATTTG
CtgactcttataaaaaaataagttcCACATCAGAGACATGCATGTCAACA
AAACACAACTGATAAGCTTTAATATCAATATTctcatttaacttttttta
tgcAGAGTCTATAGAAAGCACCTCATCAGAGTGTTATTATCGTACTGTTC
TGAACGTCTTTGGACCAAGTCAAGGTATCACCAGACAATGCAAGAGAGAT
GAGCCTGAAAGACGATTTTgtacattttatcatttttgtgttGAAGAAAA
AGTCAACATCACTGTTCGACATTGTGGATCACATTATGTCTACAAGCTGA
AACCTGTCCGTATTTTACAAAGGAATAGGTTTTTTGAGATTCCCAAAAGT
GGATTATATTGTGGAACAAAGAACGAAACAATCCCTGAGCCTAGAGGTAA
ATCAATCGTGAATTTtctcttaaaatttttttacaattttccgTAACACA
CTaaacagttgacgctctctaatccgATGTTCTATATCTGACGTTCTatc
attcgataatattgagAGCTACTGCCAACAAGAAACACTTATAAACGATG
CTCTACCTtttgataagctcccttattcggtgaaaatccaattcccctta
accctttgagtgccagggtccttttttctaagtttttttttaaaaattgc
tagttcaaactttaagggcttatatcttctGATCTAGAATGAATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNaggacaatctaattcctacgagttcgaccaaaaataacgatttctaaa
tcaaactgggcattacaggagggcttcgccctcctatatagcccatgtcg
tatatatatacgacatcggcacttaaagggttaaaaatcaaattagagag
cgttaaCTGTTAGGATTATAACTTAAGTTTAACTCAAATCTCTCAGTAAT
TTCAGTTAAAGTATCGGTCCCTCAATTAAAAGGTCTTGCTTTAGCGACTA
TCCAAAATttgaattcttcatttttgccgATTCTTTGGCATCCCCCTTGA
AGATTAAAACACAGAGAGAAATCTCACAAATTTTCGCCTGGGTTTTGAGT
TGGAGCCAGCCCAAAAAGAAAAGAGCAGATTCAATTTAACACAGTACTAT
TCTTTATAGCGCCTTGTATTTGCCAAGTCAAGAAGGACGTCCAAGAAATC
CTTGATCAAACCAAGTGCCAAGTTGATTACGAAGGTATTTACTGACATta
tctactttaatgggataaattttcatGGTATTaagtttcgcgaatttggg
tgtcatccgtgaaattaagtcccgatggaaatttggaaaggtttaatccg
caaaattttttaaacaaaactcaaaaaatgtcaaattaacTACTGGCAGC
AAAGAAGCACTAATAAAGCgcatttcaacaaccaatatgtAAAATCTGGC
AGTAAAAAGAcataaaatcatgaaaatattgtctcccgATAATGCCTtcc
acgaaattaaatccccgcgaaaatttatcccattaaagtaagtAAAACCT
ATTTCTCGATATTTTAAGGAAAGTTTTCTCAGAAAGTGTCTTCGCACAAG
CAAACCTCTTATTaggtaaaaaatattaaattcaagaaaaactgcTATTA
CCATAGTaggggggaaatttgttcgtttttttgaggtcgctcgattattt
tggtcaaagcacttgttatacatttttggaaaggtaaggggtaggggaat
caaaatttcaatgtttccaattttttttcggacactttggtgtgattttc
ggacaaatatgacggtctcaggcaaaaatcatagggtcaaaaattaatga
aaaTTTTAGCTTGAGAAAACGGAGACCTGTTGTATATTTgtggaaagctc
tcaaaaaattaagattagagatatattgcaagtataggtgatttctgtac
ctaactcgagatattaacccttgaaaaccgtgtttttcagccagaaacag
cttttttgtccagtttttgcgctttttgaagctcatatctcgagttaggt
actgaaatcacctatacttgcaatatatctctaatcttaattttttgaga
gctttccaaaaatgtacaacaggtctccgttttctcaagctaaaagtttc
attaaattttgaccctatgatttttgcctgagaccgtcatatttgtccaa
aaatcacaccaaagtgtccgaaaaaaaattggaaacattgaaATTCGGAC
TCCTCTATAGTtgtactttccaaaaatgtataacaagtgctttgactaaa
aaaatcgagcgattttacaaatttccccctactatatgaCATTTATCTGG
AGAGACAGGGGCGGGAATTTTTCACCGGGGAGCTCCACTGGTAAAATGAA
ACAGGGATGTGGCAAGTTGGCTtccaatagaaaaaataatgatatgAACA
TATGTTTTGTTTACGATTTTAGGTAACGAtcgaaaagttttaaaatccat
tacaaaatgcttaaaaaaagagcgcaaaatgattttaaaagaattgaaaG
TATCATCTAAATGTCATATAAAGCTCAACAAAGCATTATGgaggaaaaaa
gcaaagaaatttacaaaagaGAATCTCAAGTCACAAATCAGTGGATGTGA
AAGCGTCAAGAAAACCTTGATTAAAGGAGTTTATAACAGGTTGGCATTGA
CACGCAAATTCACCACCTCTAAACTACattaaaacctctaattaacggac
actctaaaaggcggacacctctgattagcggacaatttcattttccccgg
ccgtttcctagtcaaatc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000466TCONS_00000466Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000466-proteinTCONS_00000466-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1108002..1114219 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54	0.79	0.98	0.83	0.7	0.86	0.79	1.34	1.29	3.18	2.12	0.83	0.57	1.51	0.43	0.24	0.51	0.41	0.72	0.48	0.52	0.67	0.37	0.79	1.3	0.85	0.73	1.05	1.31	1.5