TCONS_00000463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000463
Unique NameTCONS_00000463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000463 ID=TCONS_00000463|Name=TCONS_00000463|organism=Clytia hemisphaerica|type=transcript|length=904bp
AAAATCAGGTGCAATAAGCGTCATGCCAACCCCCTAACTTTCTCAAACGA
CCAGCATACTTAAGCTCAAAAGTACCATGTATTTGTTCGAAAAACACTAG
CTCTTTTTGGAGAAGCACCAAAACATTAGCAAGATGATGAATCTTAAGTT
TTTGATTTCTATCCTAGTTGTTACAACTGCTACAGGCGCACAGCAAACAC
AGCGATTGAACTGTGGTACGAAAACAACAATATCAGAAATCGCATTGGTC
GTTGATTCCTCTGGAAGTATCGATGCTGAAGAATATAGAAATCTAACAAG
tTTCGCTAAAACCATTGTCCAAAGAGTGACAATCAGCAGTAATGGAAGTC
ATATGTCATATACCAGTTTCTCAACAAACGCATATATCGAAATCTCCTGC
GATCAATTTACCACAACTGCTGGATTCGTTGGTGAAATCGATCAGATAGA
CCGTGGCAGACATGATGATTTTACCAACATCCAAGATGGTTTGATCAAAG
GTGACCAATCACTGCAACAGAACGGATGTGGAGACAGGAAAGACGCCAAA
CAATTCGTGATTCTGATGACTGATGGAAAAGCTAACCGTGGTGATAGTGA
GACCGCCCATATAGAGAAGGGCGAGGCAATTCGAAAACGTGGCGTTGAGA
TATTCGCCCTTGGAATTGGAAATTCAGTTGATATGAAGAATTTGGAATTG
ATTGCTGGTGATTCAGCGCATACACACAAAGTGGATGATTTCAAGAGTTT
GTTAGATGATGGAGTTCTACAGAAAGTGATTTCTATTGCCTGTCCACCTG
AGACTGATGGAAGAACGACcccaacaacaacgaccacccctacaacgaca
acgaccactcctacaacgacaacgaccacccctacgACGACAACAACAAC
TACC
Run BLAST on NCBI

protein sequence of TCONS_00000463-protein

>TCONS_00000463-protein ID=TCONS_00000463-protein|Name=TCONS_00000463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MMNLKFLISILVVTTATGAQQTQRLNCGTKTTISEIALVVDSSGSIDAEE
YRNLTSFAKTIVQRVTISSNGSHMSYTSFSTNAYIEISCDQFTTTAGFVG
EIDQIDRGRHDDFTNIQDGLIKGDQSLQQNGCGDRKDAKQFVILMTDGKA
NRGDSETAHIEKGEAIRKRGVEIFALGIGNSVDMKNLELIAGDSAHTHKV
DDFKSLLDDGVLQKVISIACPPETDGRTTPTTTTTPTTTTTTPTTTTTTP
TTTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000002:1093282..1095366+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000463 ID=TCONS_00000463|Name=TCONS_00000463|organism=Clytia hemisphaerica|type=transcript|length=2085bp|location=Sequence derived from alignment at sc0000002:1093282..1095366+ (Clytia hemisphaerica)
AAAATCAGGTGCAATAAGCGTCATGCCAACCCCCTAACTTTCTCAAACGA CCAGCATACTTAAGCTCAAAAGTACCATGTATTTGTTCGAAAAACACTAG CTCTTTTTGGAGAAGCACCAAAACATTAGCAAGATGATGAATCTTAAGTT TTTGATTTCTATCCTAGTTGTTACAACTGCTACAGGCGCACAGCAAACAC AGCGATGTAAGTTACTTTAATACATTCGAAATGTCTGCTTTATCTGTTCA CTTTCGTTTTAAAACGGACACTGCCGATTACTAGTATAAACGTAGCAGAG GTGTCAAAATACCGGCAATGCTTTCAAAGGGCCATTACTTTTGATACAGC CCTTGGgagggggggtccgaataagcagggggtaggaaatttttaaattc taataagcggggggatggaataagagggggtaatttgaagacagaatttt tttgcTAGCTATTAtttccatttatactgagagggaaaaatcgtctgaga cgAGAAGTTCgtaaaatgtgatctgtggaggagatcctatttattgaaac atgaatggaaagtacactcctccataatgctcattttctaaattgctcgt ctcagataaattaatcgtctcagtataaatagaactatttttgaaatcta cgtAAAATACTGTGTCGATTGACATATAATTTGAAGTCATTTGAAGCAAA AGTTAGACCACAGGAGcctctgaaagtcaaacttGCGATAAAGTCCCGAG AGGTTAAAttttcgatttcagaaaaaaggggcTCGGCAGTGAACGTGTTA TAAAGTCGTTCGTGCTTTTCATACGGCTGATTTTTACACAAATAGAAATA AATGTCAAACTGCAAATAAAATCTACTAGCTTTTAAAATATAATACCGAT TGAAATCAAAGTAGTGGTTGTTATAGAATTACCTCTGGGACTAAATTCGA CCTTtgtttcataattatatttgtaGTGAACTGTGGTACGAAAACAACAA TATCAGAAATCGCATTGGTCGTTGATTCCTCTGGAAGTATCGATGCTGAA GAATATAGAAATCTAACAAGGTATGAATTTTTAAGCTtttgagaaaaatc tttttgctaaAAAGAATTTGATCTTAACTGAACACCGGGTCTGAATAAAA AATTGCCACAGTCAAgacaaaatcaagttttgtaGCATAATCGACAATTT GATGCTAAAATCCCATACGAATTCTCGGAATTCGCAAATAGAGTGTCTTT AAAGAATTAATGTCTTTCGTtgtaaatttcaagattttgactATCCACAA AGTTCTGATTCGCCAAGTTTGTACTTgaaagtatttaaaaaatattccaa tACTGTAATTATAGTAGCTGTTCTTAGTAAAAAGCAACATGAAAAAATAA GTAGATAATGAATGATCAAATGAAGATATTTACTCGAGGCACTGAAATCC TctcatcaaaacatttttttttaattcttagtTTCGCTAAAACCATTGTC CAAAGAGTGACAATCAGCAGTAATGGAAGTCATATGTCATATACCAGTTT CTCAACAAACGCATATATCGAAATCTCCTGCGATCAATTTACCACAACTG CTGGATTCGTTGGTGAAATCGATCAGATAGACCGTGGCAGACATGATGAT TTTACCAACATCCAAGATGGTTTGATCAAAGGTGACCAATCACTGCAACA GAACGGATGTGGAGACAGGAAAGACGCCAAACAATTCGTGATTCTGATGA CTGATGGAAAAGCTAACCGTGGTGATAGTGAGACCGCCCATATAGAGAAG GGCGAGGCAATTCGAAAACGTGGCGTTGAGATATTCGCCCTTGGAATTGG AAATTCAGTTGATATGAAGAATTTGGAATTGATTGCTGGTGATTCAGCGC ATACACACAAAGTGGATGATTTCAAGAGTTTGTTAGATGATGGAGTTCTA CAGAAAGTGATTTCTATTGCCTGTCCACCTGAGACTGATGGAAGAACGAC cccaacaacaacgaccacccctacaacgacaacgaccactcctacaacga caacgaccacccctacgACGACAACAACAACTACC

Coding sequence (CDS) from alignment at sc0000002:1093282..1095366+

>TCONS_00000463 ID=TCONS_00000463|Name=TCONS_00000463|organism=Clytia hemisphaerica|type=CDS|length=2313bp|location=Sequence derived from alignment at sc0000002:1093282..1095366+ (Clytia hemisphaerica)
ATGATGAATCTTAAGTTTTTGATTTCTATCCTAGTTGTTACAACTGCTAC
AGGCGCACAGCAAACACAGCGATTGAACTGTGGTACGAAAACAACAATAT
CAGAAATCGCATTGGTCGTTGATTCCTCTGGAAGTATCGATGCTGAAGAA
TATAGAAATCTAACAAGtTTCGCTAAAACCATTGTCCAAAGAGTGACAAT
CAGCAGTAATGGAAGTCATATGTCATATACCAGTTTCTCAACAAACGCAT
ATATCGAAATCTCCTGCGATCAATTTACCACAACTGCTGGATTCGTTGGT
GAAATCGATCAGATAGACCGTGGCAGACATGATGATTTTACCAACATCCA
AGATGGTTTGATCAAAGGTGACCAATCACTGCAACAGAACGGATGTGGAG
ACAGGAAAGACGCCAAACAATTCGTGATTCTGATGACTGATGGAAAAGCT
AACCGTGGTGATAGTGAGACCGCCCATATAGAGAAGGGCGAGGCAATTCG
AAAACGTGGCGTTGAGATATTCGCCCTTGGAATTGGAAATTCAGTTGATA
TGAAGAATTTGGAATTGATTGCTGGTGATTCAGCGCATACACACAAAGTG
GATGATTTCAAGAGTTTGTTAGATGATGGAGTTCTACAGAAAGTGATTTC
TATTGCCTGTCCACCTGAGACTGATGGAAGAACGACcccaacaacaacga
ccacccctacaacgacaacgaccactcctacaacgacaacgaccacccct
acgACGACAACAACAACTACCATGATGAATCTTAAGTTTTTGATTTCTAT
CCTAGTTGTTACAACTGCTACAGGCGCACAGCAAACACAGCGATTGAACT
GTGGTACGAAAACAACAATATCAGAAATCGCATTGGTCGTTGATTCCTCT
GGAAGTATCGATGCTGAAGAATATAGAAATCTAACAAGtTTCGCTAAAAC
CATTGTCCAAAGAGTGACAATCAGCAGTAATGGAAGTCATATGTCATATA
CCAGTTTCTCAACAAACGCATATATCGAAATCTCCTGCGATCAATTTACC
ACAACTGCTGGATTCGTTGGTGAAATCGATCAGATAGACCGTGGCAGACA
TGATGATTTTACCAACATCCAAGATGGTTTGATCAAAGGTGACCAATCAC
TGCAACAGAACGGATGTGGAGACAGGAAAGACGCCAAACAATTCGTGATT
CTGATGACTGATGGAAAAGCTAACCGTGGTGATAGTGAGACCGCCCATAT
AGAGAAGGGCGAGGCAATTCGAAAACGTGGCGTTGAGATATTCGCCCTTG
GAATTGGAAATTCAGTTGATATGAAGAATTTGGAATTGATTGCTGGTGAT
TCAGCGCATACACACAAAGTGGATGATTTCAAGAGTTTGTTAGATGATGG
AGTTCTACAGAAAGTGATTTCTATTGCCTGTCCACCTGAGACTGATGGAA
GAACGACcccaacaacaacgaccacccctacaacgacaacgaccactcct
acaacgacaacgaccacccctacgACGACAACAACAACTACCATGATGAA
TCTTAAGTTTTTGATTTCTATCCTAGTTGTTACAACTGCTACAGGCGCAC
AGCAAACACAGCGATTGAACTGTGGTACGAAAACAACAATATCAGAAATC
GCATTGGTCGTTGATTCCTCTGGAAGTATCGATGCTGAAGAATATAGAAA
TCTAACAAGtTTCGCTAAAACCATTGTCCAAAGAGTGACAATCAGCAGTA
ATGGAAGTCATATGTCATATACCAGTTTCTCAACAAACGCATATATCGAA
ATCTCCTGCGATCAATTTACCACAACTGCTGGATTCGTTGGTGAAATCGA
TCAGATAGACCGTGGCAGACATGATGATTTTACCAACATCCAAGATGGTT
TGATCAAAGGTGACCAATCACTGCAACAGAACGGATGTGGAGACAGGAAA
GACGCCAAACAATTCGTGATTCTGATGACTGATGGAAAAGCTAACCGTGG
TGATAGTGAGACCGCCCATATAGAGAAGGGCGAGGCAATTCGAAAACGTG
GCGTTGAGATATTCGCCCTTGGAATTGGAAATTCAGTTGATATGAAGAAT
TTGGAATTGATTGCTGGTGATTCAGCGCATACACACAAAGTGGATGATTT
CAAGAGTTTGTTAGATGATGGAGTTCTACAGAAAGTGATTTCTATTGCCT
GTCCACCTGAGACTGATGGAAGAACGACcccaacaacaacgaccacccct
acaacgacaacgaccactcctacaacgacaacgaccacccctacgACGAC
AACAACAACTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000292XLOC_000292Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000463-proteinTCONS_00000463-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000463-exon-sc0000002-1491911889:1093282..1093487TCONS_00000463-exon-sc0000002-1491911889:1093282..1093487Clytia hemisphaericaexon
TCONS_00000463-exon-sc0000002-1510915933:1093282..1093487TCONS_00000463-exon-sc0000002-1510915933:1093282..1093487Clytia hemisphaericaexon
TCONS_00000463-exon-sc0000002-1575043694:1093282..1093487TCONS_00000463-exon-sc0000002-1575043694:1093282..1093487Clytia hemisphaericaexon
TCONS_00000463-exon-sc0000002-1491911889:1094258..1094351TCONS_00000463-exon-sc0000002-1491911889:1094258..1094351Clytia hemisphaericaexon
TCONS_00000463-exon-sc0000002-1510915933:1094258..1094351TCONS_00000463-exon-sc0000002-1510915933:1094258..1094351Clytia hemisphaericaexon
TCONS_00000463-exon-sc0000002-1575043694:1094258..1094351TCONS_00000463-exon-sc0000002-1575043694:1094258..1094351Clytia hemisphaericaexon
TCONS_00000463-exon-sc0000002-1491911889:1094763..1095366TCONS_00000463-exon-sc0000002-1491911889:1094763..1095366Clytia hemisphaericaexon
TCONS_00000463-exon-sc0000002-1510915933:1094763..1095366TCONS_00000463-exon-sc0000002-1510915933:1094763..1095366Clytia hemisphaericaexon
TCONS_00000463-exon-sc0000002-1575043694:1094763..1095366TCONS_00000463-exon-sc0000002-1575043694:1094763..1095366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1093282..1095366 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.688399 0.380808 1.50947 0.983059 0.430164 0.532828 0.517176 0.305974 0.0706196 0.105772 0.144931 0.0311067 479.701 403.814 0.271321 0.0567836 0 0 0 0.0532119 0.164421 0.0978279 90.3645 0.0747013 0.396608 0.115452
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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