TCONS_00000462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000462
Unique NameTCONS_00000462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000462 ID=TCONS_00000462|Name=TCONS_00000462|organism=Clytia hemisphaerica|type=transcript|length=1404bp
CACCACTTGAAGCTGTTTCTTGTTGAACTGTTGGTGATAATGGTAACGGT
TTGTTTGCAAAGCATTCTGGGATCGCATCATAAGCACCACCGTTATTATT
CACGACATTGTATCCAGCCGGGAGGGTTGTACCTTTTTCGCGACATCGGT
TAAAAGCTGCTTGTGGTTCATAATTTTGGTTGATGTTATTGACTGGTTGG
TAGCTCTCGTAAATTTCTTCCTGTTGTTGAAGGCTATTGACAGATGGTGG
AATATCATAAACATCGTCTTCTAGGTGATCCATTCCTGGCTCTAATGGTA
ACGATTTAAGTTGAATGGACTCTGAGTTCGTCCTTGGTAAAGGTTTCATT
TGAATAGTTTCTGAGAGAGTTCTTTGAGGAGGTGCATCGTATATATCATC
TTGTGTGAGACATTGTTGTTGACTTCTGTTCGGCACACAATCATAAATTT
CGTCTTGGTTAAGCTCTTCATTTAAAGAGGTCATTGTTGTATAAGTTGAC
GAGTTCATTGTTGTGTAAGAAGTAGTAGGAGGGCTGTCATAGATTTCATC
TACGGTCGAAGCCTTTGATAATTGATCGGGAGGGGAGTTGTAAACTTCAT
CTTGTGCAGGGTATTGTGAGCATCTAGGATCTGGCCTTGATGGTAAGCAA
TCATACATTTCTTCCGAGTCGACAGATTCTTTTTGATTAGTGGTAGGAGG
GCAATCATAAATTTCTTCTGTAAACTGCATGTTCTCATTAATTATATTCT
CAGATAGTTCTGGTTGTTTTCGTAGTCCAGCATTAGAAGGAGGAGAATCG
TAAATGTCATCTTGTTGGGAATCTATTTTTTGAGTTGTTTGTCTTGACGG
AGGTGCATCATAAATATCATCAGTGTTTTCATCAAAAGAGTCGGGTATAT
GTTTAGGTGAGTATCTGCTGATCCTTGAGTTTGTCGGTGGACAGTCGTAA
ATATCATCCGACGAAAACGTTTCTGTCGGTTTATATTGTCGAGTATTTGA
CGGTGGACAGTCATATATATCATCCGTTTCTGGTTCTGCAAATGGTATTG
GTGAACTTTGAGGTTTCATTGCATTTGTTGATGAAGGGGGACAACCATAA
ATCACATCTTCTTCGAGCTGTTGTTGATTCAGATTCTGTTTCTGGCAAAC
AGGAGGGGAATCGTAAAGATCTTCTTCAATAAGTGAATTCTGTTGAaatc
cattttgaatttttggtgaTTCTGTTGTAAGATTGCCGTATATTGCATCC
TCGCCTTCATCGAGTTCATCAGGTTGACCTGCATATGATTGGTGAGGTAC
TGGCACCATCTGATCGGTGACACCTGATTGTGGACGTGGTGGTAGAGGAT
CGTATCCTTTTATTCCGTTATTTGAAATCATGGAGGAATTCAATTCGTCA
CCTG
Run BLAST on NCBI

transcript from alignment at sc0000002:1042821..1044338+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000462 ID=TCONS_00000462|Name=TCONS_00000462|organism=Clytia hemisphaerica|type=transcript|length=1518bp|location=Sequence derived from alignment at sc0000002:1042821..1044338+ (Clytia hemisphaerica)
CACCACTTGAAGCTGTTTCTTGTTGAACTGTTGGTGATAATGGTAACGGT
TTGTTTGCAAAGCATTCTGGGATCGCATCATAAGCACCACCGTTATTATT
CACGACATTGTATCCAGCCGGGAGGGTTGTACCTTTTTCGCGACATCGGT
TAAAAGCTGCTTGTGGTTCATAATTTTGGTTGATGTTATTGACTGGTTGG
TAGCTCTCGTAAATTTCTTCCTGTTGTTGAAGGCTATTGACAGATGGTGG
AATATCATAAACATCGTCTTCTAGGTGATCCATTCCTGGCTCTAATGGTA
ACGATTTAAGTTGAATGGACTCTGAGTTCGTCCTTGGTAAAGGTTTCATT
TGAATAGTTTCTGAGAGAGTTCTTTGAGGAGGTGCATCGTATATATCATC
TTGTGTGAGACATTGTTGTTGACTTCTGTTCGGCACACAATCATAAATTT
CGTCTTGGTTAAGCTCTTCATTTAAAGAGGTCATTGTTGTATAAGTTGAC
GGCGGTGGACAGTCGTAGATATCATCACGAGTTAAAGCTTGTTTTGACTG
TAAAGTTTGTCTGGTCGGTGGCGAATCATAAACTTCATCAGATTGTGCTA
ATTGTGATTTTAAAGAGTTCATTGTTGTGTAAGAAGTAGTAGGAGGGCTG
TCATAGATTTCATCTACGGTCGAAGCCTTTGATAATTGATCGGGAGGGGA
GTTGTAAACTTCATCTTGTGCAGGGTATTGTGAGCATCTAGGATCTGGCC
TTGATGGTAAGCAATCATACATTTCTTCCGAGTCGACAGATTCTTTTTGA
TTAGTGGTAGGAGGGCAATCATAAATTTCTTCTGTAAACTGCATGTTCTC
ATTAATTATATTCTCAGATAGTTCTGGTTGTTTTCGTAGTCCAGCATTAG
AAGGAGGAGAATCGTAAATGTCATCTTGTTGGGAATCTATTTTTTGAGTT
GTTTGTCTTGACGGAGGTGCATCATAAATATCATCAGTGTTTTCATCAAA
AGAGTCGGGTATATGTTTAGGTGAGTATCTGCTGATCCTTGAGTTTGTCG
GTGGACAGTCGTAAATATCATCCGACGAAAACGTTTCTGTCGGTTTATAT
TGTCGAGTATTTGACGGTGGACAGTCATATATATCATCCGTTTCTGGTTC
TGCAAATGGTATTGGTGAACTTTGAGGTTTCATTGCATTTGTTGATGAAG
GGGGACAACCATAAATCACATCTTCTTCGAGCTGTTGTTGATTCAGATTC
TGTTTCTGGCAAACAGGAGGGGAATCGTAAAGATCTTCTTCAATAAGTGA
ATTCTGTTGAaatccattttgaatttttggtgaTTCTGTTGTAAGATTGC
CGTATATTGCATCCTCGCCTTCATCGAGTTCATCAGGTTGACCTGCATAT
GATTGGTGAGGTACTGGCACCATCTGATCGGTGACACCTGATTGTGGACG
TGGTGGTAGAGGATCGTATCCTTTTATTCCGTTATTTGAAATCATGGAGG
AATTCAATTCGTCACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000291XLOC_000291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000462-exon-sc0000002-1491911889:1042821..1043321TCONS_00000462-exon-sc0000002-1491911889:1042821..1043321Clytia hemisphaericaexon
TCONS_00000462-exon-sc0000002-1510915933:1042821..1043321TCONS_00000462-exon-sc0000002-1510915933:1042821..1043321Clytia hemisphaericaexon
TCONS_00000462-exon-sc0000002-1575043694:1042821..1043321TCONS_00000462-exon-sc0000002-1575043694:1042821..1043321Clytia hemisphaericaexon
TCONS_00000462-exon-sc0000002-1491911889:1043436..1044338TCONS_00000462-exon-sc0000002-1491911889:1043436..1044338Clytia hemisphaericaexon
TCONS_00000462-exon-sc0000002-1510915933:1043436..1044338TCONS_00000462-exon-sc0000002-1510915933:1043436..1044338Clytia hemisphaericaexon
TCONS_00000462-exon-sc0000002-1575043694:1043436..1044338TCONS_00000462-exon-sc0000002-1575043694:1043436..1044338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1042821..1044338 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	9.52853	10.7916	11.6805	12.5284	7.01366	10.6989	5.25213	3.62422	4.41849	3.47932	1.60314	1.906	2.68129	2.33659	0.831432	4.63511	1.18464	0.843087	0.9552	1.67306	3.07917	7.08957	3.99391	4.53837	0.50043	0.300494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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