TCONS_00000460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000460
Unique NameTCONS_00000460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000460 ID=TCONS_00000460|Name=TCONS_00000460|organism=Clytia hemisphaerica|type=transcript|length=1651bp
AACGATTTGTCATTAATTGAAGTTAACTACTCGAATTGATAAGAGGTCTT
CCATtctgcagattttttttctaaaaattgTGCTATCACAGCAAGTTCCG
AACATGAGTTCATTTTTACCGCCCAGTAAAGCACCGGAGGCGTACCGCCC
TTTAAACTACACGCCAACGTCATTCGTAACCAACTTCAAAGAAATGTCAC
AACAAATCGActctaacaacaacaacaacaacaacaataaccCTCATGAA
AGCGAAGGAAAATTCTCACCTCGACCAGCGACGCAATTTTCACCAATGGG
CGATTTACGATCACACCCTTCGACGCAAGATACACATCCATTCAAAACCT
TCGACGACTCGAAATCCTTTTTGAATAATAATACGCCAAATGGTTCAATG
CCCGAACAAGATTCAATTTCATCGTCACTACAGTCTTTCCACTCTAGTGG
ACTTCCAACATCATATACTTCGTCTTACAATAACAACTCTATGCAAACGA
CCCTCTCTTCGCCGTCAAGTATCACGTCAAATATGTCGAGAAGCTTTTCA
TCCTCATCTTACGTTAAGCAGGAATCagatgaagaagatgaaggAGATCT
TACGCAATCGAAGAACGGTAAAGGTGGAAAATTACCTCGAAAACCACGAA
CAATCTTCACTAGTCAACAGTTACGCGAACTCAACCGTGCTTTCGAACGC
ACGCATTACCTCTCGTTACCTGAACGCGCAGAATTAGCACACGCACTCGG
TTTAACTCAAACCCAAATCAAAATCTGGTTCCAAAACAAGAGATCTAAAT
TCAAGAAAATCATCAAAGCTAATGGAGGACAAATGCCACCGCCATCAAGC
CTCGTTTCTGGTGGCAATCCTGGTTTATGGCCGTCTGGTTATGGTGAGAA
AAGCTTTGGCGGACCACCAATGCCACACTTGAGTCCATTCTCACCACCAC
CATCATCGCATAGTTCGGTACCCGGTGATTCTTGGTACTACCGGATGCAA
TCGGCCGGTGGATACGGAAGTCACGAAACCATGTTTCCATACGGTGGCAC
AAGCGGAACTGATGTTCGAACAACTCGGCCTAATTTCTCTTATCATATGT
AGTGTTTAAACTAATCACCTTTCTTAACCCTTAGTAACTGTCTGTTTCTG
TCCtgagtatatatttttttcactaaaaattcacaaattttagttttatc
tttttttttaacttgtgTTCtacgaaaattgtaaaaaaaaaagtaacTTC
AATATTATATTTTGGAAACACTTTTAATCATTGTATAGATGGACAAGTGA
AAATATCGAATAGTTTATTTTGTTCgctattttaagttttttttgaagag
caaatatttttTAGCCATGGAAATAGTTTAAAAATGGTATCGAATTAGTT
TTTTTGTATATATGTACATAAATTATCTTACTACAACACACAGTATCAAT
ATTttacaatgaaataaaaatccGAAAGAACGAAATAGCTAAACCTCTCA
TACAACTATGTTCCAGCTTCTAGTGTTTCGATCGAATTTTTCCCCTCGTT
AACTctattcaaactaggcttttaggaGTGGTTCCTGTAACAACCCTTAA
CTTTATCTATTGGGTCTTTTTGGACGAAATTTGGTACATAAGATCTTTGT
C
Run BLAST on NCBI

transcript from alignment at sc0000002:1022926..1025647+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000460 ID=TCONS_00000460|Name=TCONS_00000460|organism=Clytia hemisphaerica|type=transcript|length=2722bp|location=Sequence derived from alignment at sc0000002:1022926..1025647+ (Clytia hemisphaerica)
AACGATTTGTCATTAATTGAAGTTAACTACTCGAATTGATAAGAGGTCTT CCATtctgcagattttttttctaaaaattggtatgaaattttcataaatt tgtttataattattttgttAAACGGTACTATATATCACAGGTAGATCATT AGTAATTGATTATTTTCATTCTTAAGAATTACTTCGGTAATTATATATGA GGAGGGGCAGCATAATGCTCCGTCAACCATCCAAAAATGAGAAATCTCTT AGTCCAActaataaacaaaaattaatgtttaatTAATATTCTTTCTTCTA TTTCACAGTGCTATCACAGCAAGTTCCGAACATGAGTTCATTTTTACCGC CCAGTAAAGCACCGGAGGCGTACCGCCCTTTAAACTACACGCCAACGTCA TTCGTAACCAACTTCAAAGAAATGTCACAACAAATCGActctaacaacaa caacaacaacaacaataaccCTCATGAAAGCGAAGGAAAATTCTCACCTC GACCAGCGACGCAATTTTCACCAATGGGCGATTTACGATCACACCCTTCG ACGCAAGATACACATCCATTCAAAACCTTCGACGACTCGAAATCCTTTTT GAATAATAATACGCCAAATGGTTCAATGCCCGAACAAGATTCAATTTCAT CGTCACTACAGTCTTTCCACTCTAGTGGACTTCCAACATCATATACTTCG TCTTACAATAACAACTCTATGCAAACGACCCTCTCTTCGCCGTCAAGTAT CACGTCAAATATGTCGAGAAGCTTTTCATCCTCATCTTACGTTAAGCAGG AATCagatgaagaagatgaaggAGGTAAAATGTTTATTTATATTAAGGAG ATAATATTGACTTGTTGGAACTAAAATTATCTTCTTTGAATTTTAATTGA CACTGATATCTTTCATAACGATAATTTTTAGCAGGTTTTTAGCAGAGAAA AACGTCTTAGCTACATTGAACATTTTGCAGCAAAAATGTAGGAGGTTTTC CTTTAATTTTCAATGAATGTCATTAACATGATTAGGAATAATTAGATGGG TTGGTAGCTCCTAATTTAATTGCATTTAACATTTGACGTTGGTCATGTTT TTTTCCCAAAGCTTAAAAATTGTGATAAGTCAAAATGATGCATTCAAACA ATTCGCGATAAAGATCACCATTAAAGTTTTTAATCACCTCCTTGCCATAA ATTATCACAAAGATAATCAAAACATAAGAATTTCGTAAACAATCAACCAT TTCTATTTCCAGCGTTAATATCAGATAATTTCAATGATAAAATTATGAAA CCTTGCATGTgaaaaaaacacgaaaacaTGTCCTAACTTTTTCCTTAATG TTGTATTTGTGGTAGAATGGGCGCCTTAATAAAACAGTTAATTGTCGACT TTGCATTTGAGTAATGTTTTTCCGTTTTACGAAGAGAAAAAGTCTTAACG ACCTGTGACCAATTTAAGACTTTTGAATAGCTATTAAAAAATACAGGACG TTAAAATTAATGACCTCTTTTCATTACCTATTTgaaattgattattttta ttgaaactttcctaatttggaAAAAAGACTTTCTCAAGTGGGTATATTGT TTTTAATATCCGATAATTGTTGGAAAAATTAATgagtaattcttttcaat tttttcatatcTTATAGATCTTACGCAATCGAAGAACGGTAAAGGTGGAA AATTACCTCGAAAACCACGAACAATCTTCACTAGTCAACAGTTACGCGAA CTCAACCGTGCTTTCGAACGCACGCATTACCTCTCGTTACCTGAACGCGC AGAATTAGCACACGCACTCGGTTTAACTCAAACCCAAATCAAAATCTGGT TCCAAAACAAGAGATCTAAATTCAAGAAAATCATCAAAGCTAATGGAGGA CAAATGCCACCGCCATCAAGCCTCGTTTCTGGTGGCAATCCTGGTTTATG GCCGTCTGGTTATGGTGAGAAAAGCTTTGGCGGACCACCAATGCCACACT TGAGTCCATTCTCACCACCACCATCATCGCATAGTTCGGTACCCGGTGAT TCTTGGTACTACCGGATGCAATCGGCCGGTGGATACGGAAGTCACGAAAC CATGTTTCCATACGGTGGCACAAGCGGAACTGATGTTCGAACAACTCGGC CTAATTTCTCTTATCATATGTAGTGTTTAAACTAATCACCTTTCTTAACC CTTAGTAACTGTCTGTTTCTGTCCtgagtatatatttttttcactaaaaa ttcacaaattttagttttatctttttttttaacttgtgTTCtacgaaaat tgtaaaaaaaaaagtaacTTCAATATTATATTTTGGAAACACTTTTAATC ATTGTATAGATGGACAAGTGAAAATATCGAATAGTTTATTTTGTTCgcta ttttaagttttttttgaagagcaaatatttttTAGCCATGGAAATAGTTT AAAAATGGTATCGAATTAGTTTTTTTGTATATATGTACATAAATTATCTT ACTACAACACACAGTATCAATATTttacaatgaaataaaaatccGAAAGA ACGAAATAGCTAAACCTCTCATACAACTATGTTCCAGCTTCTAGTGTTTC GATCGAATTTTTCCCCTCGTTAACTctattcaaactaggcttttaggaGT GGTTCCTGTAACAACCCTTAACTTTATCTATTGGGTCTTTTTGGACGAAA TTTGGTACATAAGATCTTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000289XLOC_000289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000460-exon-sc0000002-1491911889:1022926..1023005TCONS_00000460-exon-sc0000002-1491911889:1022926..1023005Clytia hemisphaericaexon
TCONS_00000460-exon-sc0000002-1510915933:1022926..1023005TCONS_00000460-exon-sc0000002-1510915933:1022926..1023005Clytia hemisphaericaexon
TCONS_00000460-exon-sc0000002-1575043694:1022926..1023005TCONS_00000460-exon-sc0000002-1575043694:1022926..1023005Clytia hemisphaericaexon
TCONS_00000460-exon-sc0000002-1491911889:1023234..1023749TCONS_00000460-exon-sc0000002-1491911889:1023234..1023749Clytia hemisphaericaexon
TCONS_00000460-exon-sc0000002-1510915933:1023234..1023749TCONS_00000460-exon-sc0000002-1510915933:1023234..1023749Clytia hemisphaericaexon
TCONS_00000460-exon-sc0000002-1575043694:1023234..1023749TCONS_00000460-exon-sc0000002-1575043694:1023234..1023749Clytia hemisphaericaexon
TCONS_00000460-exon-sc0000002-1491911889:1024593..1025647TCONS_00000460-exon-sc0000002-1491911889:1024593..1025647Clytia hemisphaericaexon
TCONS_00000460-exon-sc0000002-1510915933:1024593..1025647TCONS_00000460-exon-sc0000002-1510915933:1024593..1025647Clytia hemisphaericaexon
TCONS_00000460-exon-sc0000002-1575043694:1024593..1025647TCONS_00000460-exon-sc0000002-1575043694:1024593..1025647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1022926..1025647 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47786 1.63182 1.36744 2.31209 84.1781 61.1589 50.6165 48.243 16.8622 17.1753 9.27017 6.30776 6.23499 5.90294 8.26008 7.4698 0.903976 0.627729 0.925622 0.177849 0.0475754 0.0348085 3.97339 2.38957 0 0.0589376 0.186748 0.280952 4.16035 2.47802
Blast
BLAST of TCONS_00000460 vs. Swiss-Prot (Human)
Match: DLX1 (Homeobox protein DLX-1 OS=Homo sapiens GN=DLX1 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.058e-26
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 2
Query:  614 NGKGGKLPRKPRTIFTSQQLRELNRAFERTHYLSLPERAELAHALGLTQTQIKIWFQNKRSKFKKIIKANGGQM 835
            NGKG K+ RKPRTI++S QL+ LNR F++T YL+LPERAELA +LGLTQTQ+KIWFQNKRSKFKK++K  G  +
Sbjct:  122 NGKGKKI-RKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQGGAAL 194          
The following BLAST results are available for this feature:
BLAST of TCONS_00000460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DLX11.058e-2668.92Homeobox protein DLX-1 OS=Homo sapiens GN=DLX1 PE=... [more]
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